data_4IU
#

_chem_comp.id                                   4IU
_chem_comp.name                                 "2-[[(2R,3R,4R)-2-(hydroxymethyl)-3-oxidanyl-3,4-dihydro-2H-pyran-4-yl]oxymethyl]-3-methyl-benzimidazole-5-carboxylic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H18 N2 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-02
_chem_comp.pdbx_modified_date                   2021-12-10
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       334.324
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    4IU
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7P1M
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4IU  O4   O1   O  0  1  N  N  N   4.146  -0.623   6.525  -7.305  -0.608  -0.989  O4   4IU   1  
4IU  C15  C1   C  0  1  N  N  N   4.216  -1.576   5.766  -6.280   0.258  -0.865  C15  4IU   2  
4IU  O5   O2   O  0  1  N  N  N   3.368  -1.585   4.726  -6.417   1.415  -1.211  O5   4IU   3  
4IU  C12  C2   C  0  1  Y  N  N   5.228  -2.685   5.964  -4.993  -0.197  -0.308  C12  4IU   4  
4IU  C11  C3   C  0  1  Y  N  N   5.464  -3.573   4.884  -4.834  -1.534   0.085  C11  4IU   5  
4IU  C10  C4   C  0  1  Y  N  N   6.425  -4.569   4.995  -3.651  -1.967   0.601  C10  4IU   6  
4IU  C8   C5   C  0  1  Y  N  N   7.156  -4.765   6.166  -2.579  -1.077   0.742  C8   4IU   7  
4IU  N    N1   N  0  1  Y  N  N   8.144  -5.610   6.603  -1.313  -1.210   1.208  N    4IU   8  
4IU  C13  C6   C  0  1  Y  N  N   5.939  -2.818   7.126  -3.934   0.700  -0.179  C13  4IU   9  
4IU  C9   C7   C  0  1  Y  N  N   6.918  -3.817   7.264  -2.730   0.266   0.348  C9   4IU  10  
4IU  N1   N2   N  0  1  Y  N  N   7.736  -4.197   8.243  -1.519   0.877   0.608  N1   4IU  11  
4IU  C14  C8   C  0  1  N  N  N   7.853  -3.519   9.528  -1.186   2.283   0.364  C14  4IU  12  
4IU  C7   C9   C  0  1  Y  N  N   8.469  -5.255   7.860  -0.694  -0.067   1.130  C7   4IU  13  
4IU  C6   C10  C  0  1  N  N  N   9.491  -5.928   8.680   0.731   0.173   1.557  C6   4IU  14  
4IU  O3   O3   O  0  1  N  N  N  10.673  -5.153   8.698   1.606  -0.066   0.453  O3   4IU  15  
4IU  C1   C11  C  0  1  N  N  R  11.658  -5.818   9.464   2.989   0.135   0.753  C1   4IU  16  
4IU  C2   C12  C  0  1  N  N  N  11.559  -5.404  10.911   3.360   1.566   0.474  C2   4IU  17  
4IU  C3   C13  C  0  1  N  N  N  12.683  -5.309  11.611   4.475   1.898  -0.122  C3   4IU  18  
4IU  O    O4   O  0  1  N  N  N  13.994  -5.634  11.065   5.387   0.997  -0.548  O    4IU  19  
4IU  C4   C14  C  0  1  N  N  R  14.152  -6.109   9.753   5.302  -0.331  -0.024  C4   4IU  20  
4IU  C    C15  C  0  1  N  N  R  13.029  -5.543   8.916   3.841  -0.793  -0.120  C    4IU  21  
4IU  O2   O5   O  0  1  N  N  N  13.114  -4.095   8.870   3.400  -0.719  -1.477  O2   4IU  22  
4IU  C5   C16  C  0  1  N  N  N  15.497  -5.851   9.177   6.194  -1.267  -0.843  C5   4IU  23  
4IU  O1   O6   O  0  1  N  N  N  16.510  -6.481   9.929   7.561  -0.886  -0.679  O1   4IU  24  
4IU  H1   H1   H  0  1  N  N  N   3.468  -0.029   6.226  -8.129  -0.263  -1.360  H1   4IU  25  
4IU  H2   H2   H  0  1  N  N  N   4.894  -3.474   3.972  -5.657  -2.225  -0.021  H2   4IU  26  
4IU  H3   H3   H  0  1  N  N  N   6.612  -5.212   4.148  -3.539  -2.998   0.902  H3   4IU  27  
4IU  H4   H4   H  0  1  N  N  N   5.745  -2.146   7.949  -4.053   1.729  -0.486  H4   4IU  28  
4IU  H5   H5   H  0  1  N  N  N   8.598  -4.037  10.150  -1.427   2.872   1.249  H5   4IU  29  
4IU  H6   H6   H  0  1  N  N  N   8.171  -2.479   9.366  -0.121   2.372   0.147  H6   4IU  30  
4IU  H7   H7   H  0  1  N  N  N   6.878  -3.529  10.038  -1.761   2.651  -0.485  H7   4IU  31  
4IU  H8   H8   H  0  1  N  N  N   9.116  -6.047   9.707   0.841   1.204   1.892  H8   4IU  32  
4IU  H9   H9   H  0  1  N  N  N   9.709  -6.918   8.253   0.984  -0.503   2.374  H9   4IU  33  
4IU  H10  H10  H  0  1  N  N  N  11.483  -6.903   9.411   3.169  -0.089   1.805  H10  4IU  34  
4IU  H11  H11  H  0  1  N  N  N  10.602  -5.191  11.364   2.680   2.348   0.777  H11  4IU  35  
4IU  H12  H12  H  0  1  N  N  N  12.623  -4.974  12.636   4.677   2.947  -0.282  H12  4IU  36  
4IU  H13  H13  H  0  1  N  N  N  14.014  -7.200   9.769   5.622  -0.337   1.018  H13  4IU  37  
4IU  H14  H14  H  0  1  N  N  N  13.099  -5.953   7.898   3.755  -1.818   0.240  H14  4IU  38  
4IU  H15  H15  H  0  1  N  N  N  13.963  -3.838   8.530   2.477  -0.978  -1.605  H15  4IU  39  
4IU  H16  H16  H  0  1  N  N  N  15.525  -6.236   8.147   6.059  -2.292  -0.498  H16  4IU  40  
4IU  H17  H17  H  0  1  N  N  N  15.680  -4.766   9.168   5.922  -1.199  -1.896  H17  4IU  41  
4IU  H18  H18  H  0  1  N  N  N  17.356  -6.298   9.537   8.185  -1.437  -1.171  H18  4IU  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4IU  O5   C15  DOUB  N  N   1  
4IU  C11  C10  DOUB  Y  N   2  
4IU  C11  C12  SING  Y  N   3  
4IU  C10  C8   SING  Y  N   4  
4IU  C15  C12  SING  N  N   5  
4IU  C15  O4   SING  N  N   6  
4IU  C12  C13  DOUB  Y  N   7  
4IU  C8   N    SING  Y  N   8  
4IU  C8   C9   DOUB  Y  N   9  
4IU  N    C7   DOUB  Y  N  10  
4IU  C13  C9   SING  Y  N  11  
4IU  C9   N1   SING  Y  N  12  
4IU  C7   N1   SING  Y  N  13  
4IU  C7   C6   SING  N  N  14  
4IU  N1   C14  SING  N  N  15  
4IU  C6   O3   SING  N  N  16  
4IU  O3   C1   SING  N  N  17  
4IU  O2   C    SING  N  N  18  
4IU  C    C1   SING  N  N  19  
4IU  C    C4   SING  N  N  20  
4IU  C5   C4   SING  N  N  21  
4IU  C5   O1   SING  N  N  22  
4IU  C1   C2   SING  N  N  23  
4IU  C4   O    SING  N  N  24  
4IU  C2   C3   DOUB  N  N  25  
4IU  O    C3   SING  N  N  26  
4IU  O4   H1   SING  N  N  27  
4IU  C11  H2   SING  N  N  28  
4IU  C10  H3   SING  N  N  29  
4IU  C13  H4   SING  N  N  30  
4IU  C14  H5   SING  N  N  31  
4IU  C14  H6   SING  N  N  32  
4IU  C14  H7   SING  N  N  33  
4IU  C6   H8   SING  N  N  34  
4IU  C6   H9   SING  N  N  35  
4IU  C1   H10  SING  N  N  36  
4IU  C2   H11  SING  N  N  37  
4IU  C3   H12  SING  N  N  38  
4IU  C4   H13  SING  N  N  39  
4IU  C    H14  SING  N  N  40  
4IU  O2   H15  SING  N  N  41  
4IU  C5   H16  SING  N  N  42  
4IU  C5   H17  SING  N  N  43  
4IU  O1   H18  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4IU  InChI             InChI                 1.03   "InChI=1S/C16H18N2O6/c1-18-11-6-9(16(21)22)2-3-10(11)17-14(18)8-24-12-4-5-23-13(7-19)15(12)20/h2-6,12-13,15,19-20H,7-8H2,1H3,(H,21,22)/t12-,13-,15-/m1/s1"  
4IU  InChIKey          InChI                 1.03   QQZYRRIGHJNGGY-UMVBOHGHSA-N  
4IU  SMILES_CANONICAL  CACTVS                3.385  "Cn1c(CO[C@@H]2C=CO[C@H](CO)[C@@H]2O)nc3ccc(cc13)C(O)=O"  
4IU  SMILES            CACTVS                3.385  "Cn1c(CO[CH]2C=CO[CH](CO)[CH]2O)nc3ccc(cc13)C(O)=O"  
4IU  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cn1c2cc(ccc2nc1CO[C@@H]3C=CO[C@@H]([C@@H]3O)CO)C(=O)O"  
4IU  SMILES            "OpenEye OEToolkits"  2.0.7  "Cn1c2cc(ccc2nc1COC3C=COC(C3O)CO)C(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          4IU
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2-[[(2~{R},3~{R},4~{R})-2-(hydroxymethyl)-3-oxidanyl-3,4-dihydro-2~{H}-pyran-4-yl]oxymethyl]-3-methyl-benzimidazole-5-carboxylic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4IU  "Create component"  2021-07-02  PDBE  
4IU  "Initial release"   2021-12-15  RCSB  
##
