data_3KU
#

_chem_comp.id                                   3KU
_chem_comp.name                                 "N-[(1R,3S)-3-{[(2E,4R)-4-(2-cyclohexylethyl)-2-imino-1-methyl-5-oxoimidazolidin-4-yl]methyl}cyclohexyl]pyridine-4-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H37 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-09-08
_chem_comp.pdbx_modified_date                   2020-06-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       439.594
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3KU
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4R92
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3KU  C1   C1   C  0  1  N  N  N  21.321  11.832  23.228  -2.056  -0.600   1.014  C1   3KU   1  
3KU  C2   C2   C  0  1  N  N  R  20.912  10.723  22.273  -2.098  -0.138  -0.427  C2   3KU   2  
3KU  N3   N3   N  0  1  N  N  N  21.496   9.548  22.903  -2.271  -1.376  -1.204  N3   3KU   3  
3KU  C4   C4   C  0  1  N  N  N  22.127   9.890  24.075  -2.319  -2.405  -0.296  C4   3KU   4  
3KU  N5   N5   N  0  1  N  N  N  22.040  11.254  24.248  -2.193  -1.939   0.991  N5   3KU   5  
3KU  O6   O6   O  0  1  N  N  N  20.991  12.999  23.130  -1.921   0.098   1.996  O6   3KU   6  
3KU  C7   C7   C  0  1  N  N  N  19.396  10.556  22.222  -3.282   0.804  -0.652  C7   3KU   7  
3KU  C8   C8   C  0  1  N  N  S  22.929  11.038  20.694   0.392  -0.346  -0.419  C8   3KU   8  
3KU  C9   C9   C  0  1  N  N  N  18.698  10.520  23.588  -4.576   0.108  -0.225  C9   3KU   9  
3KU  C10  C10  C  0  1  N  N  N  17.244  10.075  23.544  -5.760   1.051  -0.450  C10  3KU  10  
3KU  C11  C11  C  0  1  N  N  N  23.379  12.188  19.809   1.699   0.435  -0.568  C11  3KU  11  
3KU  C12  C12  C  0  1  N  N  R  24.899  12.133  19.643   2.876  -0.463  -0.182  C12  3KU  12  
3KU  C13  C13  C  0  1  N  N  N  25.386  10.785  19.124   2.907  -1.687  -1.099  C13  3KU  13  
3KU  C14  C14  C  0  1  N  N  N  24.936   9.689  20.066   1.600  -2.468  -0.950  C14  3KU  14  
3KU  C15  C15  C  0  1  N  N  N  23.412   9.706  20.131   0.422  -1.570  -1.336  C15  3KU  15  
3KU  C16  C16  C  0  1  N  N  N  16.807   9.749  24.969  -7.064   0.313  -0.140  C16  3KU  16  
3KU  C17  C17  C  0  1  N  N  N  15.340   9.344  25.086  -8.249   1.255  -0.366  C17  3KU  17  
3KU  C18  C18  C  0  1  N  N  N  14.424  10.367  24.423  -8.118   2.469   0.557  C18  3KU  18  
3KU  C19  C19  C  0  1  N  N  N  14.882  10.720  23.012  -6.813   3.206   0.248  C19  3KU  19  
3KU  C20  C20  C  0  1  N  N  N  16.346  11.152  22.948  -5.629   2.264   0.473  C20  3KU  20  
3KU  N21  N21  N  0  1  N  N  N  22.734   9.105  24.902  -2.466  -3.659  -0.612  N21  3KU  21  
3KU  N22  N22  N  0  1  N  N  N  25.389  13.207  18.818   4.128   0.285  -0.324  N22  3KU  22  
3KU  C23  C23  C  0  1  N  N  N  25.762  14.399  19.420   5.210  -0.068   0.398  C23  3KU  23  
3KU  C24  C24  C  0  1  N  N  N  21.415  10.976  20.854  -0.785   0.552  -0.805  C24  3KU  24  
3KU  C25  C25  C  0  1  N  N  N  22.650  12.016  25.333  -2.206  -2.790   2.183  C25  3KU  25  
3KU  O26  O26  O  0  1  N  N  N  25.681  14.646  20.620   5.148  -1.007   1.167  O26  3KU  26  
3KU  C27  C27  C  0  1  Y  N  N  26.304  15.410  18.503   6.476   0.688   0.254  C27  3KU  27  
3KU  C28  C28  C  0  1  Y  N  N  26.483  16.705  18.955   7.610   0.339   0.993  C28  3KU  28  
3KU  C29  C29  C  0  1  Y  N  N  27.000  17.622  18.061   8.769   1.071   0.827  C29  3KU  29  
3KU  C30  C30  C  0  1  Y  N  N  26.636  15.076  17.207   6.571   1.768  -0.629  C30  3KU  30  
3KU  C31  C31  C  0  1  Y  N  N  27.157  16.068  16.402   7.772   2.442  -0.737  C31  3KU  31  
3KU  N32  N32  N  0  1  Y  N  N  27.349  17.336  16.797   8.815   2.086  -0.012  N32  3KU  32  
3KU  H1   H1   H  0  1  N  N  N  18.980  11.398  21.649  -3.144   1.709  -0.061  H1   3KU  33  
3KU  H2   H2   H  0  1  N  N  N  19.175   9.613  21.701  -3.342   1.066  -1.709  H2   3KU  34  
3KU  H3   H3   H  0  1  N  N  N  23.376  11.173  21.690   0.278  -0.670   0.615  H3   3KU  35  
3KU  H4   H4   H  0  1  N  N  N  19.250   9.825  24.237  -4.714  -0.797  -0.816  H4   3KU  36  
3KU  H5   H5   H  0  1  N  N  N  18.734  11.531  24.019  -4.515  -0.153   0.832  H5   3KU  37  
3KU  H6   H6   H  0  1  N  N  N  17.167   9.165  22.930  -5.768   1.383  -1.488  H6   3KU  38  
3KU  H7   H7   H  0  1  N  N  N  23.094  13.143  20.275   1.813   0.759  -1.602  H7   3KU  39  
3KU  H8   H8   H  0  1  N  N  N  22.898  12.103  18.823   1.678   1.307   0.086  H8   3KU  40  
3KU  H9   H9   H  0  1  N  N  N  25.330  12.259  20.647   2.763  -0.786   0.853  H9   3KU  41  
3KU  H10  H10  H  0  1  N  N  N  24.966  10.604  18.124   3.021  -1.363  -2.134  H10  3KU  42  
3KU  H11  H11  H  0  1  N  N  N  26.484  10.790  19.065   3.746  -2.326  -0.824  H11  3KU  43  
3KU  H12  H12  H  0  1  N  N  N  25.281   8.713  19.693   1.621  -3.340  -1.604  H12  3KU  44  
3KU  H13  H13  H  0  1  N  N  N  25.353   9.866  21.068   1.486  -2.792   0.084  H13  3KU  45  
3KU  H14  H14  H  0  1  N  N  N  23.003   9.568  19.119  -0.509  -2.127  -1.230  H14  3KU  46  
3KU  H15  H15  H  0  1  N  N  N  23.066   8.889  20.781   0.536  -1.247  -2.371  H15  3KU  47  
3KU  H16  H16  H  0  1  N  N  N  17.427   8.919  25.341  -7.158  -0.551  -0.798  H16  3KU  48  
3KU  H17  H17  H  0  1  N  N  N  16.972  10.639  25.594  -7.057  -0.019   0.898  H17  3KU  49  
3KU  H18  H18  H  0  1  N  N  N  15.075   9.264  26.151  -8.257   1.587  -1.404  H18  3KU  50  
3KU  H19  H19  H  0  1  N  N  N  15.198   8.368  24.598  -9.178   0.730  -0.145  H19  3KU  51  
3KU  H20  H20  H  0  1  N  N  N  14.416  11.283  25.032  -8.961   3.140   0.397  H20  3KU  52  
3KU  H21  H21  H  0  1  N  N  N  13.407   9.951  24.372  -8.110   2.136   1.595  H21  3KU  53  
3KU  H22  H22  H  0  1  N  N  N  14.257  11.544  22.637  -6.821   3.538  -0.790  H22  3KU  54  
3KU  H23  H23  H  0  1  N  N  N  14.749   9.837  22.370  -6.720   4.071   0.905  H23  3KU  55  
3KU  H24  H24  H  0  1  N  N  N  16.629  11.320  21.898  -5.621   1.932   1.511  H24  3KU  56  
3KU  H25  H25  H  0  1  N  N  N  16.474  12.085  23.516  -4.700   2.789   0.253  H25  3KU  57  
3KU  H26  H26  H  0  1  N  N  N  23.128   9.605  25.673  -2.491  -4.335   0.083  H26  3KU  58  
3KU  H28  H28  H  0  1  N  N  N  25.459  13.095  17.827   4.178   1.035  -0.938  H28  3KU  59  
3KU  H29  H29  H  0  1  N  N  N  20.999  11.936  20.513  -0.767   0.733  -1.880  H29  3KU  60  
3KU  H30  H30  H  0  1  N  N  N  21.040  10.165  20.212  -0.707   1.501  -0.275  H30  3KU  61  
3KU  H31  H31  H  0  1  N  N  N  23.167  11.329  26.019  -3.229  -2.898   2.542  H31  3KU  62  
3KU  H32  H32  H  0  1  N  N  N  23.374  12.732  24.916  -1.803  -3.772   1.933  H32  3KU  63  
3KU  H33  H33  H  0  1  N  N  N  21.869  12.562  25.882  -1.594  -2.334   2.961  H33  3KU  64  
3KU  H34  H34  H  0  1  N  N  N  26.229  16.988  19.966   7.580  -0.491   1.683  H34  3KU  65  
3KU  H35  H35  H  0  1  N  N  N  27.132  18.638  18.402   9.651   0.809   1.394  H35  3KU  66  
3KU  H36  H36  H  0  1  N  N  N  26.493  14.072  16.835   5.719   2.071  -1.219  H36  3KU  67  
3KU  H37  H37  H  0  1  N  N  N  27.428  15.807  15.389   7.854   3.280  -1.413  H37  3KU  68  
3KU  H38  H38  H  0  1  N  N  N  21.445   8.620  22.534  -2.338  -1.451  -2.169  H38  3KU  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3KU  C31  N32  DOUB  Y  N   1  
3KU  C31  C30  SING  Y  N   2  
3KU  N32  C29  SING  Y  N   3  
3KU  C30  C27  DOUB  Y  N   4  
3KU  C29  C28  DOUB  Y  N   5  
3KU  C27  C28  SING  Y  N   6  
3KU  C27  C23  SING  N  N   7  
3KU  N22  C23  SING  N  N   8  
3KU  N22  C12  SING  N  N   9  
3KU  C13  C12  SING  N  N  10  
3KU  C13  C14  SING  N  N  11  
3KU  C23  O26  DOUB  N  N  12  
3KU  C12  C11  SING  N  N  13  
3KU  C11  C8   SING  N  N  14  
3KU  C14  C15  SING  N  N  15  
3KU  C15  C8   SING  N  N  16  
3KU  C8   C24  SING  N  N  17  
3KU  C24  C2   SING  N  N  18  
3KU  C7   C2   SING  N  N  19  
3KU  C7   C9   SING  N  N  20  
3KU  C2   N3   SING  N  N  21  
3KU  C2   C1   SING  N  N  22  
3KU  N3   C4   SING  N  N  23  
3KU  C20  C19  SING  N  N  24  
3KU  C20  C10  SING  N  N  25  
3KU  C19  C18  SING  N  N  26  
3KU  O6   C1   DOUB  N  N  27  
3KU  C1   N5   SING  N  N  28  
3KU  C10  C9   SING  N  N  29  
3KU  C10  C16  SING  N  N  30  
3KU  C4   N5   SING  N  N  31  
3KU  C4   N21  DOUB  N  N  32  
3KU  N5   C25  SING  N  N  33  
3KU  C18  C17  SING  N  N  34  
3KU  C16  C17  SING  N  N  35  
3KU  C7   H1   SING  N  N  36  
3KU  C7   H2   SING  N  N  37  
3KU  C8   H3   SING  N  N  38  
3KU  C9   H4   SING  N  N  39  
3KU  C9   H5   SING  N  N  40  
3KU  C10  H6   SING  N  N  41  
3KU  C11  H7   SING  N  N  42  
3KU  C11  H8   SING  N  N  43  
3KU  C12  H9   SING  N  N  44  
3KU  C13  H10  SING  N  N  45  
3KU  C13  H11  SING  N  N  46  
3KU  C14  H12  SING  N  N  47  
3KU  C14  H13  SING  N  N  48  
3KU  C15  H14  SING  N  N  49  
3KU  C15  H15  SING  N  N  50  
3KU  C16  H16  SING  N  N  51  
3KU  C16  H17  SING  N  N  52  
3KU  C17  H18  SING  N  N  53  
3KU  C17  H19  SING  N  N  54  
3KU  C18  H20  SING  N  N  55  
3KU  C18  H21  SING  N  N  56  
3KU  C19  H22  SING  N  N  57  
3KU  C19  H23  SING  N  N  58  
3KU  C20  H24  SING  N  N  59  
3KU  C20  H25  SING  N  N  60  
3KU  N21  H26  SING  N  N  61  
3KU  N22  H28  SING  N  N  62  
3KU  C24  H29  SING  N  N  63  
3KU  C24  H30  SING  N  N  64  
3KU  C25  H31  SING  N  N  65  
3KU  C25  H32  SING  N  N  66  
3KU  C25  H33  SING  N  N  67  
3KU  C28  H34  SING  N  N  68  
3KU  C29  H35  SING  N  N  69  
3KU  C30  H36  SING  N  N  70  
3KU  C31  H37  SING  N  N  71  
3KU  N3   H38  SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3KU  SMILES            ACDLabs               12.01  "O=C1N(C(=[N@H])NC1(CC3CCCC(NC(=O)c2ccncc2)C3)CCC4CCCCC4)C"  
3KU  InChI             InChI                 1.03   "InChI=1S/C25H37N5O2/c1-30-23(32)25(29-24(30)26,13-10-18-6-3-2-4-7-18)17-19-8-5-9-21(16-19)28-22(31)20-11-14-27-15-12-20/h11-12,14-15,18-19,21H,2-10,13,16-17H2,1H3,(H2,26,29)(H,28,31)/t19-,21+,25+/m0/s1"  
3KU  InChIKey          InChI                 1.03   NAGJGYNUXJYJOV-PIBDYAPNSA-N  
3KU  SMILES_CANONICAL  CACTVS                3.385  "CN1C(=N)N[C@](CCC2CCCCC2)(C[C@H]3CCC[C@H](C3)NC(=O)c4ccncc4)C1=O"  
3KU  SMILES            CACTVS                3.385  "CN1C(=N)N[C](CCC2CCCCC2)(C[CH]3CCC[CH](C3)NC(=O)c4ccncc4)C1=O"  
3KU  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "[H]/N=C/1\N[C@](C(=O)N1C)(CCC2CCCCC2)C[C@H]3CCC[C@H](C3)NC(=O)c4ccncc4"  
3KU  SMILES            "OpenEye OEToolkits"  1.7.6  "CN1C(=O)C(NC1=N)(CCC2CCCCC2)CC3CCCC(C3)NC(=O)c4ccncc4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3KU  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(1R,3S)-3-{[(2E,4R)-4-(2-cyclohexylethyl)-2-imino-1-methyl-5-oxoimidazolidin-4-yl]methyl}cyclohexyl]pyridine-4-carboxamide"  
3KU  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "N-[(1R,3S)-3-[[(4R)-2-azanylidene-4-(2-cyclohexylethyl)-1-methyl-5-oxidanylidene-imidazolidin-4-yl]methyl]cyclohexyl]pyridine-4-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3KU  "Create component"    2014-09-08  RCSB  
3KU  "Initial release"     2014-11-05  RCSB  
3KU  "Other modification"  2020-06-27  RCSB  
##
