data_13U
#

_chem_comp.id                                   13U
_chem_comp.name                                 "N-cyclooctylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H35 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[2-(cyclooctylamino)ethanoyl]pyrrolidine-2-carboxamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-02-06
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       413.556
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    13U
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2ZHE
_chem_comp.pdbx_subcomponent_list               "CNG PRO 00S"
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
13U  C14   C14   C  0  1  N  N  N  18.243  -13.928  22.166  -1.667   0.699  -0.185  C14   CNG   1  
13U  O32   O32   O  0  1  N  N  N  17.188  -13.420  22.538  -1.004  -0.287   0.057  O32   CNG   2  
13U  C5    C5    C  0  1  N  N  N  18.954  -15.244  22.511  -3.169   0.599  -0.255  C5    CNG   3  
13U  N21   N21   N  0  1  N  N  N  18.694  -15.931  23.746  -3.580  -0.787   0.004  N21   CNG   4  
13U  C49   C49   C  0  1  N  N  N  19.328  -15.780  25.040  -5.041  -0.923  -0.057  C49   CNG   5  
13U  C48   C48   C  0  1  N  N  N  18.965  -14.465  25.718  -5.477  -2.123   0.786  C48   CNG   6  
13U  C47   C47   C  0  1  N  N  N  19.990  -13.666  26.518  -6.554  -1.684   1.780  C47   CNG   7  
13U  C46   C46   C  0  1  N  N  N  21.085  -12.678  26.131  -7.885  -1.512   1.046  C46   CNG   8  
13U  C45   C45   C  0  1  N  N  N  22.025  -13.028  24.981  -7.862  -0.207   0.248  C45   CNG   9  
13U  C44   C44   C  0  1  N  N  N  22.646  -14.413  25.084  -7.882  -0.523  -1.249  C44   CNG  10  
13U  C43   C43   C  0  1  N  N  N  22.010  -15.644  24.454  -6.908  -1.666  -1.541  C43   CNG  11  
13U  C42   C42   C  0  1  N  N  N  20.744  -16.325  24.945  -5.474  -1.135  -1.509  C42   CNG  12  
13U  N1    N1    N  0  1  N  N  N  18.888  -13.128  21.294  -1.060   1.885  -0.391  N     PRO  13  
13U  C1    C1    C  0  1  N  N  S  18.395  -11.869  20.860   0.397   2.107  -0.445  CA    PRO  14  
13U  C7    C7    C  0  1  N  N  N  17.016  -11.788  20.278   1.099   1.228   0.557  C     PRO  15  
13U  O22   O22   O  0  1  N  N  N  16.540  -12.774  19.728   0.530   0.896   1.576  O     PRO  16  
13U  C2    C2    C  0  1  N  N  N  19.396  -11.421  19.814   0.584   3.600  -0.078  CB    PRO  17  
13U  C3    C3    C  0  1  N  N  N  20.542  -12.396  19.701  -0.647   4.247  -0.766  CG    PRO  18  
13U  C4    C4    C  0  1  N  N  N  20.108  -13.572  20.546  -1.741   3.171  -0.600  CD    PRO  19  
13U  N23   N23   N  0  1  N  N  N  16.246  -10.742  20.324   2.357   0.807   0.320  N23   00S  20  
13U  C24   C24   C  0  1  N  N  N  14.912  -10.695  19.867   3.037  -0.052   1.292  C16   00S  21  
13U  C25   C25   C  0  1  Y  N  N  13.891  -10.637  20.943   4.421  -0.379   0.792  C17   00S  22  
13U  C30   C30   C  0  1  Y  N  N  13.290   -9.427  21.270   4.624  -1.503   0.011  C22   00S  23  
13U  C29   C29   C  0  1  Y  N  N  12.342   -9.373  22.271   5.888  -1.803  -0.455  C21   00S  24  
13U  C28   C28   C  0  1  Y  N  N  11.955  -10.499  22.978   6.963  -0.978  -0.127  C24   00S  25  
13U  C21   C21   C  0  1  N  N  N  10.916  -10.403  24.065   8.323  -1.299  -0.619  C27   00S  26  
13U  N46   N46   N  0  1  N  N  N  10.143  -11.442  24.330   9.325  -0.527  -0.311  N35   00S  27  
13U  N47   N47   N  0  1  N  N  N  10.771   -9.280  24.759   8.527  -2.414  -1.401  N34   00S  28  
13U  C27   C27   C  0  1  Y  N  N  12.557  -11.700  22.646   6.753   0.150   0.665  C19   00S  29  
13U  C26   C26   C  0  1  Y  N  N  13.506  -11.763  21.647   5.484   0.443   1.120  C18   00S  30  
13U  H5    H5    H  0  1  N  N  N  18.678  -15.950  21.714  -3.612   1.256   0.493  H5    CNG  31  
13U  H5A   H5A   H  0  1  N  N  N  20.005  -14.936  22.617  -3.507   0.899  -1.247  H5A   CNG  32  
13U  HN21  HN21  H  0  0  N  N  N  17.737  -15.710  23.933  -3.130  -1.423  -0.638  HN21  CNG  33  
13U  H49   H49   H  0  1  N  N  N  18.925  -16.412  25.845  -5.506  -0.018   0.332  H49   CNG  34  
13U  H48   H48   H  0  1  N  N  N  18.635  -13.797  24.909  -5.879  -2.898   0.134  H48   CNG  35  
13U  H48A  H48A  H  0  0  N  N  N  18.247  -14.780  26.490  -4.618  -2.516   1.330  H48A  CNG  36  
13U  H47   H47   H  0  1  N  N  N  19.349  -13.056  27.171  -6.662  -2.441   2.556  H47   CNG  37  
13U  H47A  H47A  H  0  0  N  N  N  20.657  -14.510  26.747  -6.264  -0.737   2.235  H47A  CNG  38  
13U  H46   H46   H  0  1  N  N  N  20.576  -11.747  25.843  -8.036  -2.351   0.366  H46   CNG  39  
13U  H46A  H46A  H  0  0  N  N  N  21.740  -12.643  27.014  -8.698  -1.480   1.771  H46A  CNG  40  
13U  H45   H45   H  0  1  N  N  N  21.447  -12.984  24.046  -8.736   0.391   0.504  H45   CNG  41  
13U  H45A  H45A  H  0  0  N  N  N  22.852  -12.304  25.013  -6.957   0.351   0.489  H45A  CNG  42  
13U  H44   H44   H  0  1  N  N  N  23.636  -14.324  24.613  -8.889  -0.819  -1.544  H44   CNG  43  
13U  H44A  H44A  H  0  0  N  N  N  22.559  -14.629  26.159  -7.584   0.362  -1.811  H44A  CNG  44  
13U  H43   H43   H  0  1  N  N  N  21.776  -15.337  23.424  -7.024  -2.444  -0.787  H43   CNG  45  
13U  H43A  H43A  H  0  0  N  N  N  22.762  -16.410  24.693  -7.120  -2.081  -2.527  H43A  CNG  46  
13U  H42   H42   H  0  1  N  N  N  20.985  -16.585  25.986  -5.425  -0.186  -2.044  H42   CNG  47  
13U  H42A  H42A  H  0  0  N  N  N  20.596  -17.022  24.107  -4.808  -1.855  -1.985  H42A  CNG  48  
13U  H1    H1    H  0  1  N  N  N  18.293  -11.244  21.759   0.774   1.913  -1.449  HA    PRO  49  
13U  H2    H2    H  0  1  N  N  N  18.888  -11.354  18.841   0.549   3.744   1.002  HB2   PRO  50  
13U  H2A   H2A   H  0  1  N  N  N  19.799  -10.442  20.113   1.513   3.991  -0.493  HB3   PRO  51  
13U  H3    H3    H  0  1  N  N  N  20.711  -12.695  18.656  -0.932   5.169  -0.259  HG2   PRO  52  
13U  H3A   H3A   H  0  1  N  N  N  21.496  -11.965  20.039  -0.446   4.433  -1.821  HG3   PRO  53  
13U  H4    H4    H  0  1  N  N  N  19.876  -14.439  19.910  -2.363   3.406   0.264  HD2   PRO  54  
13U  H4A   H4A   H  0  1  N  N  N  20.907  -13.882  21.236  -2.354   3.124  -1.499  HD3   PRO  55  
13U  HN23  HN23  H  0  0  N  N  N  16.629   -9.905  20.714   2.812   1.072  -0.495  HN23  00S  56  
13U  H24   H24   H  0  1  N  N  N  14.800   -9.792  19.249   3.109   0.466   2.248  H16   00S  57  
13U  H24A  H24A  H  0  0  N  N  N  14.735  -11.631  19.316   2.471  -0.975   1.421  H16A  00S  58  
13U  H30   H30   H  0  1  N  N  N  13.566   -8.528  20.740   3.791  -2.143  -0.239  H22   00S  59  
13U  H29   H29   H  0  1  N  N  N  11.888   -8.423  22.511   6.044  -2.678  -1.069  H21   00S  60  
13U  HN46  HN46  H  0  0  N  N  N   9.522  -11.194  25.073  10.216  -0.737  -0.633  HN35  00S  61  
13U  HN47  HN47  H  0  0  N  N  N  11.434   -8.611  24.422   7.780  -2.989  -1.631  HN34  00S  62  
13U  HN4A  HN4A  H  0  0  N  N  N  10.110   -9.129  25.494   9.418  -2.624  -1.723  HN3A  00S  63  
13U  H27   H27   H  0  1  N  N  N  12.280  -12.599  23.176   7.582   0.793   0.922  H19   00S  64  
13U  H26   H26   H  0  1  N  N  N  13.959  -12.714  21.409   5.320   1.316   1.734  H18   00S  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
13U  O22  C7    DOUB  N  N   1  
13U  C7   N23   SING  N  N   2  
13U  C7   C1    SING  N  N   3  
13U  N23  C24   SING  N  N   4  
13U  C24  C25   SING  N  N   5  
13U  C25  C26   DOUB  Y  N   6  
13U  C25  C30   SING  Y  N   7  
13U  C26  C27   SING  Y  N   8  
13U  C27  C28   DOUB  Y  N   9  
13U  C28  C21   SING  N  N  10  
13U  C28  C29   SING  Y  N  11  
13U  C21  N46   DOUB  N  N  12  
13U  C21  N47   SING  N  N  13  
13U  C29  C30   DOUB  Y  N  14  
13U  C1   C2    SING  N  N  15  
13U  C1   N1    SING  N  N  16  
13U  C2   C3    SING  N  N  17  
13U  C3   C4    SING  N  N  18  
13U  C4   N1    SING  N  N  19  
13U  N1   C14   SING  N  N  20  
13U  C14  O32   DOUB  N  N  21  
13U  C14  C5    SING  N  N  22  
13U  C5   N21   SING  N  N  23  
13U  N21  C49   SING  N  N  24  
13U  C49  C48   SING  N  N  25  
13U  C49  C42   SING  N  N  26  
13U  C48  C47   SING  N  N  27  
13U  C47  C46   SING  N  N  28  
13U  C46  C45   SING  N  N  29  
13U  C45  C44   SING  N  N  30  
13U  C44  C43   SING  N  N  31  
13U  C43  C42   SING  N  N  32  
13U  N23  HN23  SING  N  N  33  
13U  C24  H24   SING  N  N  34  
13U  C24  H24A  SING  N  N  35  
13U  C26  H26   SING  N  N  36  
13U  C27  H27   SING  N  N  37  
13U  N46  HN46  SING  N  N  38  
13U  N47  HN47  SING  N  N  39  
13U  N47  HN4A  SING  N  N  40  
13U  C29  H29   SING  N  N  41  
13U  C30  H30   SING  N  N  42  
13U  C1   H1    SING  N  N  43  
13U  C2   H2    SING  N  N  44  
13U  C2   H2A   SING  N  N  45  
13U  C3   H3    SING  N  N  46  
13U  C3   H3A   SING  N  N  47  
13U  C4   H4    SING  N  N  48  
13U  C4   H4A   SING  N  N  49  
13U  C5   H5    SING  N  N  50  
13U  C5   H5A   SING  N  N  51  
13U  N21  HN21  SING  N  N  52  
13U  C49  H49   SING  N  N  53  
13U  C48  H48   SING  N  N  54  
13U  C48  H48A  SING  N  N  55  
13U  C47  H47   SING  N  N  56  
13U  C47  H47A  SING  N  N  57  
13U  C46  H46   SING  N  N  58  
13U  C46  H46A  SING  N  N  59  
13U  C45  H45   SING  N  N  60  
13U  C45  H45A  SING  N  N  61  
13U  C44  H44   SING  N  N  62  
13U  C44  H44A  SING  N  N  63  
13U  C43  H43   SING  N  N  64  
13U  C43  H43A  SING  N  N  65  
13U  C42  H42   SING  N  N  66  
13U  C42  H42A  SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
13U  SMILES            ACDLabs               10.04  "O=C(NCc1ccc(C(=[N@H])N)cc1)C3N(C(=O)CNC2CCCCCCC2)CCC3"  
13U  InChI             InChI                 1.03   "InChI=1S/C23H35N5O2/c24-22(25)18-12-10-17(11-13-18)15-27-23(30)20-9-6-14-28(20)21(29)16-26-19-7-4-2-1-3-5-8-19/h10-13,19-20,26H,1-9,14-16H2,(H3,24,25)(H,27,30)/t20-/m0/s1"  
13U  InChIKey          InChI                 1.03   MMLOIDMSBRJZAE-FQEVSTJZSA-N  
13U  SMILES_CANONICAL  CACTVS                3.385  "NC(=N)c1ccc(CNC(=O)[C@@H]2CCCN2C(=O)CNC3CCCCCCC3)cc1"  
13U  SMILES            CACTVS                3.385  "NC(=N)c1ccc(CNC(=O)[CH]2CCCN2C(=O)CNC3CCCCCCC3)cc1"  
13U  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.5  "[H]/N=C(/c1ccc(cc1)CNC(=O)[C@@H]2CCCN2C(=O)CNC3CCCCCCC3)\N"  
13U  SMILES            "OpenEye OEToolkits"  1.7.5  "c1cc(ccc1CNC(=O)C2CCCN2C(=O)CNC3CCCCCCC3)C(=N)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
13U  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-cyclooctylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide"  
13U  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[2-(cyclooctylamino)ethanoyl]pyrrolidine-2-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
13U  "Create component"          2008-02-06  PDBJ  
13U  "Modify subcomponent list"  2010-11-15  RCSB  
13U  "Modify aromatic_flag"      2011-06-04  RCSB  
13U  "Modify descriptor"         2011-06-04  RCSB  
13U  "Modify descriptor"         2012-01-05  RCSB  
13U  "Modify synonyms"           2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     13U
_pdbx_chem_comp_synonyms.name        "(2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[2-(cyclooctylamino)ethanoyl]pyrrolidine-2-carboxamide"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
