data_11U
#

_chem_comp.id                                   11U
_chem_comp.name                                 "(S)-N-(4-carbamimidoylbenzyl)-1-(2-(cyclohexylamino)ethanoyl)pyrrolidine-2-carboxamide"
_chem_comp.type                                 peptide-like
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H31 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2S)-1-[cyclohexylamino)acetyl-N-{4-[amino(imino)methyl]benzyl}pyrrolidine-2-carboxamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-12-04
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       385.503
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    11U
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3BIV
_chem_comp.pdbx_subcomponent_list               "M30 PRO 00S"
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
11U  C14   C14   C  0  1  N  N  N  -2.516   -6.373   3.685   2.422   0.407   0.336  C     M30   1  
11U  O32   O32   O  0  1  N  N  N  -1.627   -7.011   4.242   2.006  -0.642   0.780  O     M30   2  
11U  C15   C15   C  0  1  N  N  N  -2.941   -6.897   2.395   3.869   0.535  -0.063  CA    M30   3  
11U  N5    N5    N  0  1  N  N  N  -3.140   -8.369   2.351   4.559  -0.738   0.181  N     M30   4  
11U  C16   C16   C  0  1  N  N  N  -3.569   -8.915   1.027   5.976  -0.651  -0.197  C3    M30   5  
11U  C21   C21   C  0  1  N  N  N  -3.572  -10.471   1.098   6.779  -0.068   0.967  C4    M30   6  
11U  C20   C20   C  0  1  N  N  N  -4.094  -11.128  -0.210   8.255   0.024   0.573  C5    M30   7  
11U  C19   C19   C  0  1  N  N  N  -5.496  -10.596  -0.604   8.781  -1.374   0.240  C6    M30   8  
11U  C18   C18   C  0  1  N  N  N  -5.505   -9.052  -0.704   7.978  -1.957  -0.925  C7    M30   9  
11U  C17   C17   C  0  1  N  N  N  -4.974   -8.387   0.589   6.502  -2.048  -0.531  C8    M30  10  
11U  N1    N1    N  0  1  N  N  N  -2.999   -5.260   4.248   1.589   1.458   0.199  N     PRO  11  
11U  C2    C2    C  0  1  N  N  S  -3.727   -4.227   3.592   0.160   1.469   0.542  CA    PRO  12  
11U  C7    C7    C  0  1  N  N  N  -3.292   -3.821   2.240  -0.577   0.458  -0.298  C     PRO  13  
11U  O22   O22   O  0  1  N  N  N  -2.071   -3.444   2.231   0.027  -0.212  -1.108  O     PRO  14  
11U  C3    C3    C  0  1  N  N  N  -3.736   -3.026   4.581  -0.371   2.888   0.246  CB    PRO  15  
11U  C4    C4    C  0  1  N  N  N  -3.288   -3.602   5.931   0.914   3.756   0.278  CG    PRO  16  
11U  C5    C5    C  0  1  N  N  N  -2.980   -5.081   5.645   1.960   2.785  -0.325  CD    PRO  17  
11U  N23   N23   N  0  1  N  N  N  -4.288   -3.942   1.238  -1.907   0.299  -0.149  N23   00S  18  
11U  C24   C24   C  0  1  N  N  N  -4.108   -3.523  -0.081  -2.623  -0.685  -0.966  C16   00S  19  
11U  C25   C25   C  0  1  Y  N  N  -5.024   -4.170  -1.071  -4.086  -0.666  -0.607  C17   00S  20  
11U  C26   C26   C  0  1  Y  N  N  -4.525   -5.074  -2.035  -4.562  -1.498   0.391  C22   00S  21  
11U  C27   C27   C  0  1  Y  N  N  -5.350   -5.582  -3.056  -5.900  -1.481   0.727  C21   00S  22  
11U  C28   C28   C  0  1  Y  N  N  -6.716   -5.210  -3.169  -6.775  -0.630   0.052  C24   00S  23  
11U  C31   C31   C  0  1  N  N  N  -7.510   -5.652  -4.248  -8.213  -0.611   0.405  C27   00S  24  
11U  N49   N49   N  0  1  N  N  N  -7.062   -6.385  -5.198  -9.028   0.184  -0.227  N35   00S  25  
11U  N48   N48   N  0  1  N  N  N  -8.752   -5.346  -4.395  -8.689  -1.435   1.402  N34   00S  26  
11U  C29   C29   C  0  1  Y  N  N  -7.225   -4.355  -2.155  -6.291   0.203  -0.956  C19   00S  27  
11U  C30   C30   C  0  1  Y  N  N  -6.399   -3.849  -1.127  -4.949   0.180  -1.280  C18   00S  28  
11U  H15   H15   H  0  1  N  N  N  -3.900   -6.422   2.141   3.933   0.786  -1.122  HA1   M30  29  
11U  H15A  H15A  H  0  0  N  N  N  -2.164   -6.643   1.659   4.340   1.322   0.526  HA2   M30  30  
11U  H20   H20   H  0  1  N  N  N  -2.269   -8.799   2.587   4.459  -1.025   1.143  H2    M30  31  
11U  H21   H21   H  0  1  N  N  N  -2.853   -8.569   0.267   6.080  -0.005  -1.069  H4    M30  32  
11U  H301  H301  H  0  0  N  N  N  -2.541  -10.813   1.272   6.404   0.928   1.205  H5    M30  33  
11U  H31   H31   H  0  1  N  N  N  -4.225  -10.780   1.927   6.675  -0.713   1.839  H6    M30  34  
11U  H28   H28   H  0  1  N  N  N  -4.160  -12.215  -0.056   8.827   0.439   1.403  H7    M30  35  
11U  H291  H291  H  0  0  N  N  N  -3.390  -10.901  -1.024   8.359   0.669  -0.299  H8    M30  36  
11U  H261  H261  H  0  0  N  N  N  -6.222  -10.907   0.162   8.677  -2.019   1.112  H9    M30  37  
11U  H271  H271  H  0  0  N  N  N  -5.774  -11.017  -1.581   9.832  -1.309  -0.041  H10   M30  38  
11U  H241  H241  H  0  0  N  N  N  -6.539   -8.716  -0.874   8.353  -2.952  -1.162  H11   M30  39  
11U  H25   H25   H  0  1  N  N  N  -4.863   -8.750  -1.545   8.082  -1.311  -1.797  H12   M30  40  
11U  H22   H22   H  0  1  N  N  N  -5.687   -8.596   1.400   6.398  -2.693   0.342  H13   M30  41  
11U  H23   H23   H  0  1  N  N  N  -4.893   -7.305   0.410   5.930  -2.463  -1.360  H14   M30  42  
11U  H2    H2    H  0  1  N  N  N  -4.726   -4.628   3.366   0.030   1.240   1.600  HA    PRO  43  
11U  H3    H3    H  0  1  N  N  N  -4.743   -2.590   4.657  -1.072   3.208   1.017  HB2   PRO  44  
11U  H3A   H3A   H  0  1  N  N  N  -3.047   -2.238   4.244  -0.836   2.924  -0.739  HB3   PRO  45  
11U  H4    H4    H  0  1  N  N  N  -4.082   -3.503   6.686   1.177   4.028   1.301  HG2   PRO  46  
11U  H4A   H4A   H  0  1  N  N  N  -2.397   -3.079   6.308   0.802   4.644  -0.344  HG3   PRO  47  
11U  H5    H5    H  0  1  N  N  N  -3.738   -5.723   6.118   2.963   3.056   0.004  HD2   PRO  48  
11U  H5A   H5A   H  0  1  N  N  N  -1.990   -5.345   6.046   1.902   2.793  -1.413  HD3   PRO  49  
11U  HN23  HN23  H  0  0  N  N  N  -5.166   -4.349   1.490  -2.390   0.835   0.499  HN23  00S  50  
11U  H24   H24   H  0  1  N  N  N  -4.287   -2.438  -0.116  -2.504  -0.437  -2.020  H16   00S  51  
11U  H24A  H24A  H  0  0  N  N  N  -3.075   -3.764  -0.372  -2.216  -1.678  -0.778  H16A  00S  52  
11U  H26   H26   H  0  1  N  N  N  -3.491   -5.381  -1.988  -3.884  -2.159   0.910  H22   00S  53  
11U  H27   H27   H  0  1  N  N  N  -4.933   -6.274  -3.773  -6.269  -2.127   1.509  H21   00S  54  
11U  HN49  HN49  H  0  0  N  N  N  -7.765   -6.584  -5.881  -9.970   0.196   0.004  HN35  00S  55  
11U  HN48  HN48  H  0  0  N  N  N  -9.258   -5.678  -5.191  -8.082  -2.027   1.872  HN34  00S  56  
11U  HN4A  HN4A  H  0  0  N  N  N  -9.211   -4.776  -3.713  -9.631  -1.422   1.633  HN3A  00S  57  
11U  H29   H29   H  0  1  N  N  N  -8.271   -4.085  -2.171  -6.963   0.864  -1.482  H19   00S  58  
11U  H30   H30   H  0  1  N  N  N  -6.825   -3.206  -0.371  -4.573   0.824  -2.061  H18   00S  59  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
11U  N1   C14   SING  N  N   1  
11U  N1   C5    SING  N  N   2  
11U  N1   C2    SING  N  N   3  
11U  C14  O32   DOUB  N  N   4  
11U  C14  C15   SING  N  N   5  
11U  C5   C4    SING  N  N   6  
11U  C4   C3    SING  N  N   7  
11U  C3   C2    SING  N  N   8  
11U  C2   C7    SING  N  N   9  
11U  C7   N23   SING  N  N  10  
11U  C7   O22   DOUB  N  N  11  
11U  N23  C24   SING  N  N  12  
11U  C24  C25   SING  N  N  13  
11U  C25  C30   DOUB  Y  N  14  
11U  C25  C26   SING  Y  N  15  
11U  C30  C29   SING  Y  N  16  
11U  C29  C28   DOUB  Y  N  17  
11U  C28  C31   SING  N  N  18  
11U  C28  C27   SING  Y  N  19  
11U  C31  N49   DOUB  N  N  20  
11U  C31  N48   SING  N  N  21  
11U  C27  C26   DOUB  Y  N  22  
11U  C15  N5    SING  N  N  23  
11U  N5   C16   SING  N  N  24  
11U  C16  C17   SING  N  N  25  
11U  C16  C21   SING  N  N  26  
11U  C17  C18   SING  N  N  27  
11U  C18  C19   SING  N  N  28  
11U  C19  C20   SING  N  N  29  
11U  C20  C21   SING  N  N  30  
11U  C15  H15   SING  N  N  31  
11U  C15  H15A  SING  N  N  32  
11U  C5   H5    SING  N  N  33  
11U  C5   H5A   SING  N  N  34  
11U  C4   H4    SING  N  N  35  
11U  C4   H4A   SING  N  N  36  
11U  C3   H3    SING  N  N  37  
11U  C3   H3A   SING  N  N  38  
11U  C2   H2    SING  N  N  39  
11U  N23  HN23  SING  N  N  40  
11U  C24  H24   SING  N  N  41  
11U  C24  H24A  SING  N  N  42  
11U  C30  H30   SING  N  N  43  
11U  C29  H29   SING  N  N  44  
11U  N49  HN49  SING  N  N  45  
11U  N48  HN48  SING  N  N  46  
11U  N48  HN4A  SING  N  N  47  
11U  C27  H27   SING  N  N  48  
11U  C26  H26   SING  N  N  49  
11U  N5   H20   SING  N  N  50  
11U  C16  H21   SING  N  N  51  
11U  C17  H22   SING  N  N  52  
11U  C17  H23   SING  N  N  53  
11U  C18  H241  SING  N  N  54  
11U  C18  H25   SING  N  N  55  
11U  C19  H261  SING  N  N  56  
11U  C19  H271  SING  N  N  57  
11U  C20  H28   SING  N  N  58  
11U  C20  H291  SING  N  N  59  
11U  C21  H301  SING  N  N  60  
11U  C21  H31   SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
11U  SMILES            ACDLabs               12.01  "O=C(NCc1ccc(C(=[N@H])N)cc1)C3N(C(=O)CNC2CCCCC2)CCC3"  
11U  InChI             InChI                 1.03   "InChI=1S/C21H31N5O2/c22-20(23)16-10-8-15(9-11-16)13-25-21(28)18-7-4-12-26(18)19(27)14-24-17-5-2-1-3-6-17/h8-11,17-18,24H,1-7,12-14H2,(H3,22,23)(H,25,28)/t18-/m0/s1"  
11U  InChIKey          InChI                 1.03   RYKFVFFOIYLADT-SFHVURJKSA-N  
11U  SMILES_CANONICAL  CACTVS                3.385  "NC(=N)c1ccc(CNC(=O)[C@@H]2CCCN2C(=O)CNC3CCCCC3)cc1"  
11U  SMILES            CACTVS                3.385  "NC(=N)c1ccc(CNC(=O)[CH]2CCCN2C(=O)CNC3CCCCC3)cc1"  
11U  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.5  "[H]/N=C(/c1ccc(cc1)CNC(=O)[C@@H]2CCCN2C(=O)CNC3CCCCC3)\N"  
11U  SMILES            "OpenEye OEToolkits"  1.7.5  "c1cc(ccc1CNC(=O)C2CCCN2C(=O)CNC3CCCCC3)C(=N)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
11U  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-cyclohexylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide"  
11U  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "(2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[2-(cyclohexylamino)ethanoyl]pyrrolidine-2-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
11U  "Create component"      2007-12-04  PDBJ  
11U  "Other modification"    2011-02-17  RCSB  
11U  "Modify aromatic_flag"  2011-06-04  RCSB  
11U  "Modify descriptor"     2011-06-04  RCSB  
11U  "Modify descriptor"     2012-01-05  RCSB  
11U  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     11U
_pdbx_chem_comp_synonyms.name        "(2S)-1-[cyclohexylamino)acetyl-N-{4-[amino(imino)methyl]benzyl}pyrrolidine-2-carboxamide"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
