data_YOT
# 
_chem_comp.id                                    YOT 
_chem_comp.name                                  "(3S)-3-{5-[(1,2-benzoxazol-3-yl)amino]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}piperidine-2,6-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H16 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-15 
_chem_comp.pdbx_modified_date                    2023-12-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        376.365 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YOT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8G66 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YOT C10 C1  C 0 1 Y N N N N N 64.228 23.361 23.187 -3.908 -0.182 -0.082 C10 YOT 1  
YOT C13 C2  C 0 1 Y N N N N N 63.555 23.763 25.292 -5.622 1.352  -0.175 C13 YOT 2  
YOT C15 C3  C 0 1 Y N N N N N 65.679 22.654 25.302 -6.407 -0.867 0.402  C15 YOT 3  
YOT C17 C4  C 0 1 Y N N N N N 64.582 23.271 27.360 -7.949 0.952  0.225  C17 YOT 4  
YOT C20 C5  C 0 1 Y N N N N N 63.675 23.557 18.735 0.238  -2.499 -0.517 C20 YOT 5  
YOT C21 C6  C 0 1 Y N N N N N 64.740 23.048 17.996 0.959  -1.362 -0.139 C21 YOT 6  
YOT C22 C7  C 0 1 N N N N N N 64.947 22.926 16.532 2.402  -1.069 -0.106 C22 YOT 7  
YOT C24 C8  C 0 1 N N N N N N 68.097 22.768 14.845 4.765  0.008  1.498  C24 YOT 8  
YOT C02 C9  C 0 1 N N N N N N 66.853 20.558 14.942 4.636  0.854  -0.826 C02 YOT 9  
YOT C03 C10 C 0 1 N N S N N N 66.763 22.062 15.086 3.926  0.816  0.502  C03 YOT 10 
YOT C05 C11 C 0 1 N N N N N N 66.839 22.038 17.637 1.321  0.806  0.631  C05 YOT 11 
YOT C06 C12 C 0 1 Y N N N N N 65.843 22.523 18.641 0.272  -0.228 0.308  C06 YOT 12 
YOT C07 C13 C 0 1 Y N N N N N 65.901 22.497 20.027 -1.099 -0.229 0.379  C07 YOT 13 
YOT C08 C14 C 0 1 Y N N N N N 64.844 22.996 20.778 -1.812 -1.365 0.003  C08 YOT 14 
YOT C14 C15 C 0 1 Y N N N N N 64.610 23.200 24.596 -5.360 -0.004 0.077  C14 YOT 15 
YOT C16 C16 C 0 1 Y N N N N N 65.651 22.700 26.689 -7.685 -0.387 0.473  C16 YOT 16 
YOT C18 C17 C 0 1 Y N N N N N 63.513 23.814 26.664 -6.928 1.820  -0.097 C18 YOT 17 
YOT C19 C18 C 0 1 Y N N N N N 63.728 23.528 20.124 -1.136 -2.496 -0.446 C19 YOT 18 
YOT C25 C19 C 0 1 N N N N N N 68.813 22.224 13.625 6.167  0.624  1.568  C25 YOT 19 
YOT C27 C20 C 0 1 N N N N N N 68.986 20.739 13.730 6.755  0.673  0.183  C27 YOT 20 
YOT N04 N1  N 0 1 N N N N N N 66.179 22.360 16.374 2.616  0.181  0.338  N04 YOT 21 
YOT N09 N2  N 0 1 N N N N N N 65.018 22.911 22.180 -3.203 -1.368 0.073  N09 YOT 22 
YOT N11 N3  N 0 1 Y N N N N N 63.074 23.960 23.095 -3.409 0.979  -0.401 N11 YOT 23 
YOT N26 N4  N 0 1 N N N N N N 67.947 20.039 14.300 5.974  0.787  -0.902 N26 YOT 24 
YOT O01 O1  O 0 1 N N N N N N 65.973 19.835 15.408 3.987  0.946  -1.845 O01 YOT 25 
YOT O12 O2  O 0 1 Y N N N N N 62.616 24.230 24.430 -4.444 1.939  -0.468 O12 YOT 26 
YOT O23 O3  O 0 1 N N N N N N 64.210 23.275 15.630 3.276  -1.849 -0.435 O23 YOT 27 
YOT O28 O4  O 0 1 N N N N N N 70.004 20.150 13.348 7.958  0.608  0.045  O28 YOT 28 
YOT H1  H1  H 0 1 N N N N N N 66.512 22.205 24.782 -6.208 -1.910 0.596  H1  YOT 29 
YOT H2  H2  H 0 1 N N N N N N 64.581 23.293 28.440 -8.964 1.317  0.284  H2  YOT 30 
YOT H3  H3  H 0 1 N N N N N N 62.814 23.972 18.232 0.760  -3.377 -0.868 H3  YOT 31 
YOT H4  H4  H 0 1 N N N N N N 68.739 22.626 15.727 4.300  0.045  2.483  H4  YOT 32 
YOT H5  H5  H 0 1 N N N N N N 67.909 23.842 14.698 4.834  -1.027 1.164  H5  YOT 33 
YOT H6  H6  H 0 1 N N N N N N 66.069 22.419 14.311 3.796  1.832  0.874  H6  YOT 34 
YOT H7  H7  H 0 1 N N N N N N 67.010 20.956 17.734 1.181  1.689  0.008  H7  YOT 35 
YOT H8  H8  H 0 1 N N N N N N 67.797 22.570 17.735 1.267  1.080  1.685  H8  YOT 36 
YOT H9  H9  H 0 1 N N N N N N 66.769 22.088 20.523 -1.623 0.649  0.725  H9  YOT 37 
YOT H10 H10 H 0 1 N N N N N N 66.474 22.285 27.253 -8.495 -1.056 0.725  H10 YOT 38 
YOT H11 H11 H 0 1 N N N N N N 62.677 24.261 27.182 -7.143 2.861  -0.288 H11 YOT 39 
YOT H12 H12 H 0 1 N N N N N N 62.903 23.918 20.701 -1.692 -3.374 -0.742 H12 YOT 40 
YOT H13 H13 H 0 1 N N N N N N 69.802 22.698 13.546 6.100  1.635  1.971  H13 YOT 41 
YOT H14 H14 H 0 1 N N N N N N 68.222 22.456 12.726 6.801  0.015  2.212  H14 YOT 42 
YOT H15 H15 H 0 1 N N N N N N 65.853 22.447 22.474 -3.678 -2.199 0.231  H15 YOT 43 
YOT H16 H16 H 0 1 N N N N N N 67.996 19.042 14.239 6.393  0.823  -1.776 H16 YOT 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YOT O28 C27 DOUB N N 1  
YOT C25 C27 SING N N 2  
YOT C25 C24 SING N N 3  
YOT C27 N26 SING N N 4  
YOT N26 C02 SING N N 5  
YOT C24 C03 SING N N 6  
YOT C02 C03 SING N N 7  
YOT C02 O01 DOUB N N 8  
YOT C03 N04 SING N N 9  
YOT O23 C22 DOUB N N 10 
YOT N04 C22 SING N N 11 
YOT N04 C05 SING N N 12 
YOT C22 C21 SING N N 13 
YOT C05 C06 SING N N 14 
YOT C21 C06 DOUB Y N 15 
YOT C21 C20 SING Y N 16 
YOT C06 C07 SING Y N 17 
YOT C20 C19 DOUB Y N 18 
YOT C07 C08 DOUB Y N 19 
YOT C19 C08 SING Y N 20 
YOT C08 N09 SING N N 21 
YOT N09 C10 SING N N 22 
YOT N11 C10 DOUB Y N 23 
YOT N11 O12 SING Y N 24 
YOT C10 C14 SING Y N 25 
YOT O12 C13 SING Y N 26 
YOT C14 C13 DOUB Y N 27 
YOT C14 C15 SING Y N 28 
YOT C13 C18 SING Y N 29 
YOT C15 C16 DOUB Y N 30 
YOT C18 C17 DOUB Y N 31 
YOT C16 C17 SING Y N 32 
YOT C15 H1  SING N N 33 
YOT C17 H2  SING N N 34 
YOT C20 H3  SING N N 35 
YOT C24 H4  SING N N 36 
YOT C24 H5  SING N N 37 
YOT C03 H6  SING N N 38 
YOT C05 H7  SING N N 39 
YOT C05 H8  SING N N 40 
YOT C07 H9  SING N N 41 
YOT C16 H10 SING N N 42 
YOT C18 H11 SING N N 43 
YOT C19 H12 SING N N 44 
YOT C25 H13 SING N N 45 
YOT C25 H14 SING N N 46 
YOT N09 H15 SING N N 47 
YOT N26 H16 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YOT SMILES           ACDLabs              12.01 "O=C1NC(=O)CCC1N1Cc2cc(ccc2C1=O)Nc1noc2ccccc21"                                                                                                                       
YOT InChI            InChI                1.06  "InChI=1S/C20H16N4O4/c25-17-8-7-15(19(26)22-17)24-10-11-9-12(5-6-13(11)20(24)27)21-18-14-3-1-2-4-16(14)28-23-18/h1-6,9,15H,7-8,10H2,(H,21,23)(H,22,25,26)/t15-/m0/s1" 
YOT InChIKey         InChI                1.06  AJUZTJBGJWQZFW-HNNXBMFYSA-N                                                                                                                                           
YOT SMILES_CANONICAL CACTVS               3.385 "O=C1CC[C@H](N2Cc3cc(Nc4noc5ccccc45)ccc3C2=O)C(=O)N1"                                                                                                                 
YOT SMILES           CACTVS               3.385 "O=C1CC[CH](N2Cc3cc(Nc4noc5ccccc45)ccc3C2=O)C(=O)N1"                                                                                                                  
YOT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(no2)Nc3ccc4c(c3)CN(C4=O)[C@H]5CCC(=O)NC5=O"                                                                                                             
YOT SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(no2)Nc3ccc4c(c3)CN(C4=O)C5CCC(=O)NC5=O"                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YOT "SYSTEMATIC NAME" ACDLabs              12.01 "(3S)-3-{5-[(1,2-benzoxazol-3-yl)amino]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}piperidine-2,6-dione"   
YOT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[6-(1,2-benzoxazol-3-ylamino)-3-oxidanylidene-1~{H}-isoindol-2-yl]piperidine-2,6-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YOT "Create component" 2023-02-15 RCSB 
YOT "Initial release"  2023-12-13 RCSB 
# 
