data_YGT
# 
_chem_comp.id                                    YGT 
_chem_comp.name                                  "(R)-(cyclohexylamino){3-[(3R,4R)-3-{4-[(1R,3R,4R,6R)-6-{[(R)-(cyclohexylamino)(hydroxy)methoxy]methyl}-1-azabicyclo[2.2.2]octan-3-yl]butyl}piperidin-4-yl]propoxy}methanol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H50 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-14 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        578.785 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YGT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G56 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YGT C02  C1   C 0 1 N N N N N N -15.139 7.356  46.467 6.617   1.223  0.209  C02  YGT 1  
YGT C04  C2   C 0 1 N N R N N N -13.413 10.304 47.235 4.026   -1.378 0.558  C04  YGT 2  
YGT C05  C3   C 0 1 N N N N N N -13.645 12.606 47.690 4.138   -3.713 -0.074 C05  YGT 3  
YGT C06  C4   C 0 1 N N S N N N -12.768 12.861 46.427 3.066   -4.080 0.956  C06  YGT 4  
YGT C07  C5   C 0 1 N N S N N N -11.700 11.740 46.232 3.156   -3.102 2.135  C07  YGT 5  
YGT C11  C6   C 0 1 N N N N N N -11.673 11.452 48.719 5.592   -2.856 1.663  C11  YGT 6  
YGT O12  O1   O 0 1 N N N N N N -13.991 8.058  46.616 5.802   0.179  -0.034 O12  YGT 7  
YGT C15  C7   C 0 1 N N N N N N -10.814 11.825 47.493 4.561   -3.198 2.743  C15  YGT 8  
YGT C16  C8   C 0 1 N N N N N N -13.681 5.887  45.084 8.395   2.749  -0.461 C16  YGT 9  
YGT C17  C9   C 0 1 N N N N N N -13.561 4.386  44.729 9.664   2.616  -1.305 C17  YGT 10 
YGT C18  C10  C 0 1 N N N N N N -13.432 6.803  43.870 7.673   4.048  -0.827 C18  YGT 11 
YGT C19  C11  C 0 1 N N N N N N -12.179 6.459  43.021 8.595   5.238  -0.554 C19  YGT 12 
YGT C20  C12  C 0 1 N N N N N N -12.200 4.139  44.059 10.586  3.806  -1.032 C20  YGT 13 
YGT C21  C13  C 0 1 N N N N N N -12.044 4.945  42.760 9.864   5.104  -1.398 C21  YGT 14 
YGT N01  N1   N 0 1 N N S N N N -13.154 11.326 48.339 4.897   -2.551 0.405  N01  YGT 15 
YGT C03  C14  C 0 1 N N N N N N -13.604 13.227 45.264 1.734   -3.987 0.336  C03  YGT 16 
YGT C08  C15  C 0 1 N N N N N N -14.346 13.437 44.332 0.672   -3.912 -0.159 C08  YGT 17 
YGT C09  C16  C 0 1 N N N N N N -12.293 10.298 46.180 2.950   -1.677 1.605  C09  YGT 18 
YGT N10  N2   N 0 1 N N N N N N -14.988 6.192  45.712 7.512   1.610  -0.722 N10  YGT 19 
YGT O13  O2   O 0 1 N N N N N N -16.202 7.742  46.997 6.543   1.820  1.265  O13  YGT 20 
YGT C14  C17  C 0 1 N N N N N N -13.928 8.961  47.718 4.859   -0.178 1.011  C14  YGT 21 
YGT N51  N3   N 0 1 N N R N N N -16.503 12.496 39.369 -4.378  -1.663 -1.676 N51  YGT 22 
YGT C52  C18  C 0 1 N N N N N N -14.515 12.275 35.953 -6.552  1.136  0.486  C52  YGT 23 
YGT C53  C19  C 0 1 N N N N N N -16.081 13.801 42.367 -1.636  -3.750 -1.233 C53  YGT 24 
YGT C54  C20  C 0 1 N N R N N N -15.215 13.236 39.449 -4.166  -1.585 -0.225 C54  YGT 25 
YGT C55  C21  C 0 1 N N N N N N -17.220 12.469 40.688 -3.203  -2.228 -2.352 C55  YGT 26 
YGT C56  C22  C 0 1 N N R N N N -17.147 13.859 41.356 -2.968  -3.657 -1.853 C56  YGT 27 
YGT C57  C23  C 0 1 N N R N N N -16.930 14.891 40.239 -4.046  -4.003 -0.818 C57  YGT 28 
YGT C58  C24  C 0 1 N N N N N N -15.252 13.636 43.242 -0.574  -3.825 -0.739 C58  YGT 29 
YGT C59  C25  C 0 1 N N N N N N -15.495 14.741 39.702 -3.958  -2.995 0.335  C59  YGT 30 
YGT N60  N4   N 0 1 N N N N N N -15.088 12.495 34.691 -6.729  2.420  0.115  N60  YGT 31 
YGT C61  C26  C 0 1 N N N N N N -17.355 13.254 38.407 -5.589  -2.435 -1.990 C61  YGT 32 
YGT O62  O3   O 0 1 N N N N N N -15.213 12.750 37.040 -5.518  0.429  -0.007 O62  YGT 33 
YGT O63  O4   O 0 1 N N N N N N -13.419 11.696 36.114 -7.326  0.617  1.266  O63  YGT 34 
YGT C64  C27  C 0 1 N N N N N N -14.388 13.051 38.177 -5.390  -0.948 0.437  C64  YGT 35 
YGT C65  C28  C 0 1 N N N N N N -17.920 14.506 39.122 -5.421  -3.889 -1.486 C65  YGT 36 
YGT C66  C29  C 0 1 N N N N N N -14.293 12.834 33.473 -7.854  3.189  0.652  C66  YGT 37 
YGT C67  C30  C 0 1 N N N N N N -12.863 12.235 33.595 -7.516  4.681  0.613  C67  YGT 38 
YGT C68  C31  C 0 1 N N N N N N -15.069 12.508 32.164 -9.101  2.926  -0.195 C68  YGT 39 
YGT C69  C32  C 0 1 N N N N N N -14.177 12.345 30.910 -10.276 3.730  0.365  C69  YGT 40 
YGT C70  C33  C 0 1 N N N N N N -12.103 12.126 32.258 -8.692  5.484  1.173  C70  YGT 41 
YGT C71  C34  C 0 1 N N N N N N -12.975 11.429 31.202 -9.939  5.222  0.327  C71  YGT 42 
YGT H7   H5   H 0 1 N N N N N N -14.271 10.727 46.691 3.551   -1.151 -0.397 H7   YGT 43 
YGT H11  H9   H 0 1 N N N N N N -13.543 13.446 48.393 4.814   -4.557 -0.212 H11  YGT 44 
YGT H12  H10  H 0 1 N N N N N N -14.700 12.498 47.398 3.662   -3.470 -1.024 H12  YGT 45 
YGT H15  H13  H 0 1 N N N N N N -12.186 13.763 46.668 3.233   -5.097 1.311  H15  YGT 46 
YGT H19  H17  H 0 1 N N N N N N -11.103 11.938 45.330 2.405   -3.348 2.885  H19  YGT 47 
YGT H23  H21  H 0 1 N N N N N N -11.564 12.234 49.485 6.174   -1.989 1.977  H23  YGT 48 
YGT H25  H22  H 0 1 N N N N N N -11.323 10.491 49.124 6.258   -3.706 1.515  H25  YGT 49 
YGT H33  H27  H 0 1 N N N N N N -11.283 6.807  43.556 8.081   6.163  -0.814 H33  YGT 50 
YGT H3   H28  H 0 1 N N N N N N -12.253 6.979  42.055 8.862   5.256  0.503  H3   YGT 51 
YGT H34  H29  H 0 1 N N N N N N -11.402 4.432  44.757 10.853  3.824  0.025  H34  YGT 52 
YGT H28  H30  H 0 1 N N N N N N -12.108 3.068  43.826 11.490  3.711  -1.633 H28  YGT 53 
YGT H31  H32  H 0 1 N N N N N N -11.052 4.743  42.329 9.597   5.086  -2.455 H31  YGT 54 
YGT H35  H33  H 0 1 N N N N N N -12.823 4.633  42.049 10.521  5.952  -1.204 H35  YGT 55 
YGT H49  H48  H 0 1 N N N N N N -12.700 10.081 45.182 3.032   -0.966 2.427  H49  YGT 56 
YGT H50  H49  H 0 1 N N N N N N -11.525 9.552  46.433 1.963   -1.597 1.148  H50  YGT 57 
YGT H53  H52  H 0 1 N N N N N N -15.759 5.566  45.595 7.572   1.133  -1.565 H53  YGT 58 
YGT H59  H58  H 0 1 N N N N N N -13.248 8.560  48.484 4.201   0.668  1.210  H59  YGT 59 
YGT H60  H59  H 0 1 N N N N N N -14.932 9.086  48.149 5.404   -0.436 1.919  H60  YGT 60 
YGT H73  H73  H 0 1 N N N N N N -14.634 12.849 40.299 -3.284  -0.978 -0.019 H73  YGT 61 
YGT H77  H77  H 0 1 N N N N N N -18.274 12.198 40.525 -3.374  -2.243 -3.429 H77  YGT 62 
YGT H78  H78  H 0 1 N N N N N N -16.747 11.724 41.345 -2.328  -1.617 -2.132 H78  YGT 63 
YGT H81  H81  H 0 1 N N N N N N -18.110 14.065 41.846 -3.030  -4.352 -2.691 H81  YGT 64 
YGT H85  H85  H 0 1 N N N N N N -17.115 15.914 40.599 -3.894  -5.015 -0.443 H85  YGT 65 
YGT H93  H93  H 0 1 N N N N N N -14.780 15.132 40.441 -2.976  -3.060 0.804  H93  YGT 66 
YGT H94  H94  H 0 1 N N N N N N -15.391 15.300 38.761 -4.730  -3.212 1.073  H94  YGT 67 
YGT H97  H97  H 0 1 N N N N N N -16.081 12.421 34.603 -6.110  2.834  -0.507 H97  YGT 68 
YGT H101 H101 H 0 0 N N N N N N -18.184 12.617 38.066 -6.450  -1.975 -1.504 H101 YGT 69 
YGT H102 H102 H 0 0 N N N N N N -16.750 13.563 37.542 -5.744  -2.447 -3.069 H102 YGT 70 
YGT H109 H109 H 0 0 N N N N N N -13.679 12.224 38.331 -6.284  -1.504 0.158  H109 YGT 71 
YGT H110 H110 H 0 0 N N N N N N -13.831 13.978 37.977 -5.271  -0.971 1.520  H110 YGT 72 
YGT H113 H113 H 0 0 N N N N N N -18.905 14.278 39.556 -5.483  -4.593 -2.317 H113 YGT 73 
YGT H114 H114 H 0 0 N N N N N N -18.018 15.335 38.406 -6.201  -4.114 -0.758 H114 YGT 74 
YGT H117 H117 H 0 0 N N N N N N -14.162 13.926 33.480 -8.043  2.886  1.681  H117 YGT 75 
YGT H121 H121 H 0 0 N N N N N N -12.278 12.875 34.272 -6.628  4.868  1.216  H121 YGT 76 
YGT H122 H122 H 0 0 N N N N N N -12.948 11.226 34.026 -7.327  4.984  -0.417 H122 YGT 77 
YGT H125 H125 H 0 0 N N N N N N -15.781 13.325 31.975 -8.912  3.230  -1.225 H125 YGT 78 
YGT H126 H126 H 0 0 N N N N N N -15.621 11.569 32.317 -9.342  1.864  -0.167 H126 YGT 79 
YGT H129 H129 H 0 0 N N N N N N -13.808 13.334 30.600 -11.165 3.543  -0.238 H129 YGT 80 
YGT H130 H130 H 0 0 N N N N N N -14.775 11.906 30.098 -10.466 3.427  1.395  H130 YGT 81 
YGT H133 H133 H 0 0 N N N N N N -11.183 11.543 32.411 -8.881  5.181  2.203  H133 YGT 82 
YGT H134 H134 H 0 0 N N N N N N -11.843 13.135 31.905 -8.451  6.547  1.146  H134 YGT 83 
YGT H137 H137 H 0 0 N N N N N N -12.394 11.269 30.282 -9.749  5.525  -0.703 H137 YGT 84 
YGT H138 H138 H 0 0 N N N N N N -13.327 10.460 31.587 -10.776 5.794  0.726  H138 YGT 85 
YGT H4   H4   H 0 1 N N N N N N -10.428 12.849 47.607 4.650   -2.493 3.569  H4   YGT 86 
YGT H5   H45  H 0 1 N N N N N N -9.971  11.124 47.403 4.733   -4.211 3.106  H5   YGT 87 
YGT H6   H60  H 0 1 N N N N N N -12.895 6.107  45.821 8.662   2.767  0.596  H6   YGT 88 
YGT H9   H61  H 0 1 N N N N N N -13.636 3.783  45.646 10.178  1.691  -1.044 H9   YGT 89 
YGT H10  H62  H 0 1 N N N N N N -14.369 4.104  44.038 9.397   2.598  -2.362 H10  YGT 90 
YGT H13  H63  H 0 1 N N N N N N -13.319 7.833  44.240 7.406   4.030  -1.883 H13  YGT 91 
YGT H14  H14  H 0 1 N N N N N N -14.313 6.744  43.214 6.769   4.143  -0.225 H14  YGT 92 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YGT C04 H7   SING N N 1  
YGT C05 H11  SING N N 2  
YGT C05 H12  SING N N 3  
YGT C06 H15  SING N N 4  
YGT C07 H19  SING N N 5  
YGT C11 H23  SING N N 6  
YGT C11 H25  SING N N 7  
YGT C19 H33  SING N N 8  
YGT C19 H3   SING N N 9  
YGT C20 H34  SING N N 10 
YGT C20 H28  SING N N 11 
YGT C21 H31  SING N N 12 
YGT C21 H35  SING N N 13 
YGT C09 H49  SING N N 14 
YGT C09 H50  SING N N 15 
YGT N10 H53  SING N N 16 
YGT C14 H59  SING N N 17 
YGT C14 H60  SING N N 18 
YGT C54 H73  SING N N 19 
YGT C55 H77  SING N N 20 
YGT C55 H78  SING N N 21 
YGT C56 H81  SING N N 22 
YGT C57 H85  SING N N 23 
YGT C59 H93  SING N N 24 
YGT C59 H94  SING N N 25 
YGT N60 H97  SING N N 26 
YGT C61 H101 SING N N 27 
YGT C61 H102 SING N N 28 
YGT C64 H109 SING N N 29 
YGT C64 H110 SING N N 30 
YGT C65 H113 SING N N 31 
YGT C65 H114 SING N N 32 
YGT C66 H117 SING N N 33 
YGT C67 H121 SING N N 34 
YGT C67 H122 SING N N 35 
YGT C68 H125 SING N N 36 
YGT C68 H126 SING N N 37 
YGT C69 H129 SING N N 38 
YGT C69 H130 SING N N 39 
YGT C70 H133 SING N N 40 
YGT C70 H134 SING N N 41 
YGT C71 H137 SING N N 42 
YGT C71 H138 SING N N 43 
YGT C70 C71  SING N N 44 
YGT C71 C69  SING N N 45 
YGT C69 C68  SING N N 46 
YGT C68 C66  SING N N 47 
YGT C66 C67  SING N N 48 
YGT C67 C70  SING N N 49 
YGT C66 N60  SING N N 50 
YGT N60 C52  SING N N 51 
YGT C52 O63  DOUB N N 52 
YGT C52 O62  SING N N 53 
YGT O62 C64  SING N N 54 
YGT C64 C54  SING N N 55 
YGT C54 C59  SING N N 56 
YGT C54 N51  SING N N 57 
YGT C59 C57  SING N N 58 
YGT C57 C65  SING N N 59 
YGT C65 C61  SING N N 60 
YGT C61 N51  SING N N 61 
YGT N51 C55  SING N N 62 
YGT C55 C56  SING N N 63 
YGT C56 C57  SING N N 64 
YGT C56 C53  SING N N 65 
YGT C53 C58  TRIP N N 66 
YGT C58 C08  SING N N 67 
YGT C08 C03  TRIP N N 68 
YGT C03 C06  SING N N 69 
YGT C06 C05  SING N N 70 
YGT C05 N01  SING N N 71 
YGT N01 C11  SING N N 72 
YGT C11 C15  SING N N 73 
YGT C15 C07  SING N N 74 
YGT C07 C06  SING N N 75 
YGT C07 C09  SING N N 76 
YGT C09 C04  SING N N 77 
YGT C04 C14  SING N N 78 
YGT C14 O12  SING N N 79 
YGT O12 C02  SING N N 80 
YGT C02 O13  DOUB N N 81 
YGT C02 N10  SING N N 82 
YGT N10 C16  SING N N 83 
YGT C16 C17  SING N N 84 
YGT C17 C20  SING N N 85 
YGT C20 C21  SING N N 86 
YGT C21 C19  SING N N 87 
YGT C19 C18  SING N N 88 
YGT C18 C16  SING N N 89 
YGT C15 H4   SING N N 90 
YGT C15 H5   SING N N 91 
YGT C16 H6   SING N N 92 
YGT C17 H9   SING N N 93 
YGT C17 H10  SING N N 94 
YGT C18 H13  SING N N 95 
YGT C18 H14  SING N N 96 
YGT C04 N01  SING N N 97 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YGT SMILES           ACDLabs              12.01 "O=C(NC1CCCCC1)OCC1CC2CCN1CC2C#CC#CC1CN2CCC1CC2COC(=O)NC1CCCCC1"                                                                                                                                                                    
YGT InChI            InChI                1.06  "InChI=1S/C34H50N4O4/c39-33(35-29-11-3-1-4-12-29)41-23-31-19-25-15-17-37(31)21-27(25)9-7-8-10-28-22-38-18-16-26(28)20-32(38)24-42-34(40)36-30-13-5-2-6-14-30/h25-32H,1-6,11-24H2,(H,35,39)(H,36,40)/t25-,26+,27-,28+,31-,32-/m1/s1" 
YGT InChIKey         InChI                1.06  AMBLGDNBWGSPMN-PWUUJYBQSA-N                                                                                                                                                                                                         
YGT SMILES_CANONICAL CACTVS               3.385 "O=C(NC1CCCCC1)OC[C@H]2C[C@@H]3CC[N@]2C[C@@H]3C#CC#C[C@@H]4C[N@]5CC[C@@H]4C[C@@H]5COC(=O)NC6CCCCC6"                                                                                                                                 
YGT SMILES           CACTVS               3.385 "O=C(NC1CCCCC1)OC[CH]2C[CH]3CC[N]2C[CH]3C#CC#C[CH]4C[N]5CC[CH]4C[CH]5COC(=O)NC6CCCCC6"                                                                                                                                              
YGT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)NC(=O)OC[C@H]2C[C@H]3CC[N@@]2C[C@H]3C#CC#C[C@H]4CN5CC[C@H]4CC5COC(=O)NC6CCCCC6"                                                                                                                                          
YGT SMILES           "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)NC(=O)OCC2CC3CCN2CC3C#CC#CC4CN5CCC4CC5COC(=O)NC6CCCCC6"                                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YGT "SYSTEMATIC NAME" ACDLabs              12.01 "[(1S,2R,4S,5S)-5-{4-[(1R,3R,4R,6R)-6-{[(cyclohexylcarbamoyl)oxy]methyl}-1-azabicyclo[2.2.2]octan-3-yl]buta-1,3-diyn-1-yl}-1-azabicyclo[2.2.2]octan-2-yl]methyl cyclohexylcarbamate"           
YGT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(4~{S},5~{S})-5-[4-[(1~{R},3~{R},4~{R},6~{R})-6-(cyclohexylcarbamoyloxymethyl)-1-azabicyclo[2.2.2]octan-3-yl]buta-1,3-diynyl]-1-azabicyclo[2.2.2]octan-2-yl]methyl ~{N}-cyclohexylcarbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YGT "Create component" 2023-06-14 RCSB 
YGT "Initial release"  2024-12-18 RCSB 
# 
