data_XYT
#

_chem_comp.id                                   XYT
_chem_comp.name                                 Cellobiose-6-phosphate
_chem_comp.type                                 saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H23 O14 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-07-25
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       422.276
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XYT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5OKG
_chem_comp.pdbx_subcomponent_list               "BGC BG6"
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_component_id
_chem_comp_atom.pdbx_ordinal
XYT  C3   C9   C  0  1  N  N  R  -13.625  16.563  -67.143  -2.104   2.330  -0.253  BGC  1  C2    polymer  1   1  
XYT  C4   C8   C  0  1  N  N  R  -14.569  15.566  -67.814  -1.545   1.005  -0.780  BGC  1  C3    polymer  1   2  
XYT  C5   C7   C  0  1  N  N  S  -14.056  15.140  -69.200  -2.112  -0.145   0.058  BGC  1  C4    polymer  1   3  
XYT  C1   C11  C  0  1  N  N  R  -12.590  14.765  -69.156  -3.642  -0.098   0.005  BGC  1  C5    polymer  1   4  
XYT  C    C12  C  0  1  N  N  N  -11.711  14.865  -70.353  -4.217  -1.208   0.888  BGC  1  C6    polymer  1   5  
XYT  C2   C10  C  0  1  N  N  R  -12.284  15.831  -67.108  -3.634   2.281  -0.294  BGC  1  C1    polymer  1   6  
XYT  O2   O12  O  0  1  N  N  N  -11.136  16.364  -66.402  -4.164   3.493   0.248  BGC  1  O1    polymer  1   7  
XYT  O3   O11  O  0  1  N  N  N  -14.158  17.040  -65.906  -1.638   3.404  -1.073  BGC  1  O2    polymer  1   8  
XYT  O4   O10  O  0  1  N  N  N  -15.900  16.086  -67.887  -0.119   1.014  -0.678  BGC  1  O3    polymer  1   9  
XYT  O5   O9   O  0  1  N  N  N  -14.690  13.925  -69.529  -1.654  -1.392  -0.469  BGC  1  O4    polymer  1  10  
XYT  O1   O13  O  0  1  N  N  N  -11.972  15.834  -68.497  -4.095   1.171   0.479  BGC  1  O5    polymer  1  11  
XYT  O    O14  O  0  1  N  N  N  -12.004  13.859  -71.226  -5.639  -1.239   0.748  BGC  1  O6    polymer  1  12  
XYT  C6   C6   C  0  1  N  N  S  -15.801  14.110  -70.387  -0.427  -1.849   0.102  BG6  2  C1    polymer  1  13  
XYT  C11  C5   C  0  1  N  N  R  -16.525  12.802  -70.438  -0.097  -3.241  -0.442  BG6  2  C2    polymer  1  14  
XYT  O6   O8   O  0  1  N  N  N  -16.663  15.095  -69.898   0.625  -0.944  -0.240  BG6  2  O5    polymer  1  15  
XYT  C10  C4   C  0  1  N  N  S  -17.957  12.710  -70.975   1.249  -3.699   0.128  BG6  2  C3    polymer  1  16  
XYT  O13  O7   O  0  1  N  N  N  -15.818  12.098  -71.328  -1.120  -4.161  -0.053  BG6  2  O2    polymer  1  17  
XYT  C9   C3   C  0  1  N  N  S  -18.745  14.029  -70.606   2.321  -2.665  -0.231  BG6  2  C4    polymer  1  18  
XYT  O12  O6   O  0  1  N  N  N  -18.384  11.337  -70.583   1.600  -4.965  -0.432  BG6  2  O3    polymer  1  19  
XYT  C7   C2   C  0  1  N  N  R  -17.777  15.207  -70.749   1.898  -1.295   0.306  BG6  2  C5    polymer  1  20  
XYT  O11  O5   O  0  1  N  N  N  -19.857  14.384  -71.478   3.567  -3.046   0.357  BG6  2  O4    polymer  1  21  
XYT  C8   C1   C  0  1  N  N  N  -18.420  16.550  -70.486   2.934  -0.246  -0.100  BG6  2  C6    polymer  1  22  
XYT  O7   O4   O  0  1  N  N  N  -18.999  16.570  -69.172   2.601   1.009   0.497  BG6  2  O6    polymer  1  23  
XYT  P    P1   P  0  1  N  N  N  -19.650  17.927  -68.482   3.479   2.342   0.284  BG6  2  P     polymer  1  24  
XYT  O9   O2   O  0  1  N  N  N  -19.744  17.583  -67.063   3.417   2.783  -1.263  BG6  2  O1P   polymer  1  25  
XYT  O10  O3   O  0  1  N  N  N  -20.920  18.236  -68.943   2.889   3.525   1.203  BG6  2  O2P   polymer  1  26  
XYT  O8   O1   O  0  1  N  N  N  -18.815  19.043  -69.157   4.883   2.075   0.666  BG6  2  O3P   polymer  1  27  
XYT  H16  H16  H  0  1  N  N  N  -13.513  17.417  -67.827  -1.772   2.484   0.773  BGC  1  H2    polymer  1  28  
XYT  H14  H14  H  0  1  N  N  N  -14.585  14.663  -67.186  -1.835   0.874  -1.822  BGC  1  H3    polymer  1  29  
XYT  H13  H13  H  0  1  N  N  N  -14.240  15.930  -69.943  -1.780  -0.042   1.091  BGC  1  H4    polymer  1  30  
XYT  H20  H20  H  0  1  N  N  N  -12.446  13.807  -68.635  -3.974  -0.243  -1.023  BGC  1  H5    polymer  1  31  
XYT  H21  H21  H  0  1  N  N  N  -10.659  14.784  -70.042  -3.801  -2.168   0.583  BGC  1  H6C1  polymer  1  32  
XYT  H22  H22  H  0  1  N  N  N  -11.874  15.835  -70.846  -3.959  -1.014   1.929  BGC  1  H6C2  polymer  1  33  
XYT  H18  H18  H  0  1  N  N  N  -12.466  14.799  -66.774  -3.966   2.168  -1.326  BGC  1  H1    polymer  1  34  
XYT  H19  H19  H  0  1  N  N  N  -11.314  16.375  -65.469  -5.130   3.531   0.253  BGC  1  HA    polymer  1  35  
XYT  H17  H17  H  0  1  N  N  N  -13.550  17.656  -65.515  -1.959   4.274  -0.799  BGC  1  HB    polymer  1  36  
XYT  H15  H15  H  0  1  N  N  N  -16.189  16.340  -67.019   0.306   1.722  -1.181  BGC  1  HC    polymer  1  37  
XYT  H23  H23  H  0  1  N  N  N  -11.441  13.927  -71.988  -6.072  -1.920   1.281  BGC  1  H6    polymer  1  38  
XYT  H12  H12  H  0  1  N  N  N  -15.458  14.369  -71.400  -0.527  -1.897   1.187  BG6  2  HC1   polymer  1  39  
XYT  H10  H10  H  0  1  N  N  N  -16.494  12.336  -69.442  -0.037  -3.202  -1.530  BG6  2  HC2   polymer  1  40  
XYT  H8   H8   H  0  1  N  N  N  -17.873  12.712  -72.072   1.176  -3.787   1.212  BG6  2  HC3   polymer  1  41  
XYT  H11  H11  H  0  1  N  N  N  -14.902  12.097  -71.076  -2.001  -3.929  -0.377  BG6  2  HO2   polymer  1  42  
XYT  H6   H6   H  0  1  N  N  N  -19.083  13.959  -69.562   2.430  -2.614  -1.314  BG6  2  HC4   polymer  1  43  
XYT  H9   H9   H  0  1  N  N  N  -17.758  10.704  -70.914   0.963  -5.669  -0.244  BG6  2  HO3   polymer  1  44  
XYT  H5   H5   H  0  1  N  N  N  -17.425  15.211  -71.791   1.829  -1.336   1.393  BG6  2  HC5   polymer  1  45  
XYT  H7   H7   H  0  1  N  N  N  -20.259  15.187  -71.169   3.893  -3.908   0.064  BG6  2  HO4   polymer  1  46  
XYT  H3   H3   H  0  1  N  N  N  -17.657  17.339  -70.560   3.921  -0.559   0.239  BG6  2  HC61  polymer  1  47  
XYT  H4   H4   H  0  1  N  N  N  -19.207  16.729  -71.233   2.940  -0.141  -1.185  BG6  2  HC62  polymer  1  48  
XYT  H1   H1   H  0  1  N  N  N  -19.191  18.167  -66.558   2.525   2.975  -1.582  BG6  2  H1O1  polymer  1  49  
XYT  H2   H2   H  0  1  N  N  N  -20.876  19.002  -69.503   3.370   4.360   1.125  BG6  2  H2O2  polymer  1  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XYT  O11  C9   SING  N  N   1  
XYT  O13  C11  SING  N  N   2  
XYT  O    C    SING  N  N   3  
XYT  C10  C9   SING  N  N   4  
XYT  C10  O12  SING  N  N   5  
XYT  C10  C11  SING  N  N   6  
XYT  C7   C9   SING  N  N   7  
XYT  C7   C8   SING  N  N   8  
XYT  C7   O6   SING  N  N   9  
XYT  C8   O7   SING  N  N  10  
XYT  C11  C6   SING  N  N  11  
XYT  C6   O6   SING  N  N  12  
XYT  C6   O5   SING  N  N  13  
XYT  C    C1   SING  N  N  14  
XYT  O5   C5   SING  N  N  15  
XYT  C5   C1   SING  N  N  16  
XYT  C5   C4   SING  N  N  17  
XYT  O7   P    SING  N  N  18  
XYT  O8   P    DOUB  N  N  19  
XYT  C1   O1   SING  N  N  20  
XYT  O10  P    SING  N  N  21  
XYT  O1   C2   SING  N  N  22  
XYT  P    O9   SING  N  N  23  
XYT  O4   C4   SING  N  N  24  
XYT  C4   C3   SING  N  N  25  
XYT  C3   C2   SING  N  N  26  
XYT  C3   O3   SING  N  N  27  
XYT  C2   O2   SING  N  N  28  
XYT  O9   H1   SING  N  N  29  
XYT  O10  H2   SING  N  N  30  
XYT  C8   H3   SING  N  N  31  
XYT  C8   H4   SING  N  N  32  
XYT  C7   H5   SING  N  N  33  
XYT  C9   H6   SING  N  N  34  
XYT  O11  H7   SING  N  N  35  
XYT  C10  H8   SING  N  N  36  
XYT  O12  H9   SING  N  N  37  
XYT  C11  H10  SING  N  N  38  
XYT  O13  H11  SING  N  N  39  
XYT  C6   H12  SING  N  N  40  
XYT  C5   H13  SING  N  N  41  
XYT  C4   H14  SING  N  N  42  
XYT  O4   H15  SING  N  N  43  
XYT  C3   H16  SING  N  N  44  
XYT  O3   H17  SING  N  N  45  
XYT  C2   H18  SING  N  N  46  
XYT  O2   H19  SING  N  N  47  
XYT  C1   H20  SING  N  N  48  
XYT  C    H21  SING  N  N  49  
XYT  C    H22  SING  N  N  50  
XYT  O    H23  SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XYT  InChI             InChI                 1.03   "InChI=1S/C12H23O14P/c13-1-3-10(7(16)8(17)11(19)24-3)26-12-9(18)6(15)5(14)4(25-12)2-23-27(20,21)22/h3-19H,1-2H2,(H2,20,21,22)/t3-,4-,5-,6+,7-,8-,9-,10-,11-,12+/m1/s1"  
XYT  InChIKey          InChI                 1.03   ITPHOIFCAFNCLL-QRZGKKJRSA-N  
XYT  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H](O)[C@H]2O"  
XYT  SMILES            CACTVS                3.385  "OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH]2O"  
XYT  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)O)O"  
XYT  SMILES            "OpenEye OEToolkits"  2.0.6  "C(C1C(C(C(C(O1)O)O)O)OC2C(C(C(C(O2)COP(=O)(O)O)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          XYT
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{S},5~{R},6~{S})-6-[(2~{R},3~{S},4~{R},5~{R},6~{R})-2-(hydroxymethyl)-4,5,6-tris(oxidanyl)oxan-3-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XYT  "Create component"    2017-07-25  EBI   
XYT  "Initial release"     2017-10-18  RCSB  
XYT  "Other modification"  2020-07-03  RCSB  
XYT  "Obsolete component"  2020-07-17  RCSB  
##
