data_XNT
# 
_chem_comp.id                                    XNT 
_chem_comp.name                                  "7-[(1~{S})-1-[4-(2-azanylethyl)phenoxy]ethyl]-3-[3-chloranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H27 Cl N2 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-08 
_chem_comp.pdbx_modified_date                    2024-06-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        527.032 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XNT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PA3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XNT C01  C1  C  0 1 N N N N N N -22.395 -11.747 15.401 -3.904  0.734  -2.611 C01  XNT 1  
XNT C02  C2  C  0 1 N N S N N N -23.602 -12.233 14.564 -3.662  0.784  -1.101 C02  XNT 2  
XNT C04  C3  C  0 1 Y N N N N N -25.860 -12.937 15.165 -5.845  0.924  -0.170 C04  XNT 3  
XNT C05  C4  C  0 1 Y N N N N N -26.528 -11.996 14.351 -6.035  -0.396 -0.553 C05  XNT 4  
XNT C06  C5  C  0 1 Y N N N N N -27.927 -12.061 14.229 -7.213  -1.043 -0.236 C06  XNT 5  
XNT C07  C6  C  0 1 Y N N N N N -28.607 -13.038 14.924 -8.203  -0.377 0.463  C07  XNT 6  
XNT C08  C7  C  0 1 N N N N N N -30.135 -13.189 14.878 -9.488  -1.085 0.807  C08  XNT 7  
XNT C09  C8  C  0 1 N N N N N N -30.774 -13.084 16.270 -9.344  -1.769 2.168  C09  XNT 8  
XNT C11  C9  C  0 1 Y N N N N N -27.937 -13.940 15.723 -8.017  0.939  0.846  C11  XNT 9  
XNT C12  C10 C  0 1 Y N N N N N -26.580 -13.883 15.846 -6.838  1.589  0.535  C12  XNT 10 
XNT C13  C11 C  0 1 Y N N N N N -22.997 -12.977 13.340 -2.319  1.411  -0.827 C13  XNT 11 
XNT C14  C12 C  0 1 Y N N N N N -22.741 -12.258 12.159 -1.166  0.630  -0.856 C14  XNT 12 
XNT C16  C13 C  0 1 Y N N N N N -22.566 -10.712 10.598 0.400   -0.990 -1.004 C16  XNT 13 
XNT C17  C14 C  0 1 N N N N N N -22.753 -9.402  9.920  1.006   -2.310 -1.198 C17  XNT 14 
XNT C20  C15 C  0 1 Y N N N N N -22.079 -11.867 10.017 1.086   0.173  -0.703 C20  XNT 15 
XNT C21  C16 C  0 1 Y N N N N N -21.504 -11.978 8.607  2.547   0.316  -0.517 C21  XNT 16 
XNT C22  C17 C  0 1 Y N N N N N -20.611 -11.014 8.132  3.415   0.094  -1.588 C22  XNT 17 
XNT C23  C18 C  0 1 Y N N N N N -20.067 -11.103 6.856  4.776   0.230  -1.409 C23  XNT 18 
XNT C24  C19 C  0 1 Y N N N N N -20.392 -12.170 6.038  5.282   0.585  -0.172 C24  XNT 19 
XNT C25  C20 C  0 1 N N N N N N -19.784 -12.263 4.627  6.771   0.724  0.018  C25  XNT 20 
XNT C27  C21 C  0 1 N N N N N N -21.039 -9.751  3.762  9.231   -0.476 0.685  C27  XNT 21 
XNT C30  C22 C  0 1 Y N N N N N -21.269 -13.126 6.530  4.428   0.806  0.895  C30  XNT 22 
XNT C32  C23 C  0 1 Y N N N N N -21.815 -13.040 7.812  3.063   0.679  0.727  C32  XNT 23 
XNT C33  C24 C  0 1 Y N N N N N -22.181 -12.857 11.024 0.079   1.236  -0.603 C33  XNT 24 
XNT C34  C25 C  0 1 Y N N N N N -21.838 -14.213 11.064 0.147   2.604  -0.328 C34  XNT 25 
XNT C35  C26 C  0 1 Y N N N N N -22.070 -14.933 12.229 -0.997  3.349  -0.306 C35  XNT 26 
XNT C36  C27 C  0 1 Y N N N N N -22.639 -14.332 13.360 -2.229  2.757  -0.554 C36  XNT 27 
XNT N10  N1  N  0 1 N N N N N N -30.268 -11.976 17.088 -10.596 -2.460 2.504  N10  XNT 28 
XNT N15  N2  N  0 1 Y N N N N N -22.952 -10.961 11.859 -0.947  -0.706 -1.094 N15  XNT 29 
XNT O03  O1  O  0 1 N N N N N N -24.451 -12.965 15.396 -4.687  1.563  -0.480 O03  XNT 30 
XNT O18  O2  O  0 1 N N N N N N -23.186 -9.436  8.741  2.210   -2.447 -1.095 O18  XNT 31 
XNT O19  O3  O  0 1 N N N N N N -22.594 -8.343  10.552 0.228   -3.373 -1.490 O19  XNT 32 
XNT O28  O4  O  0 1 N N N N N N -22.211 -12.062 3.426  6.957   -1.209 1.801  O28  XNT 33 
XNT O29  O5  O  0 1 N N N N N N -20.331 -11.595 2.047  7.312   -1.792 -0.554 O29  XNT 34 
XNT S26  S1  S  0 1 N N N N N N -20.876 -11.487 3.380  7.469   -0.873 0.518  S26  XNT 35 
XNT CL31 CL1 CL 0 0 N N N N N N -21.766 -14.554 5.622  5.073   1.251  2.444  CL31 XNT 36 
XNT H011 H1  H  0 0 N N N N N N -22.757 -11.208 16.289 -4.875  0.281  -2.809 H011 XNT 37 
XNT H013 H2  H  0 0 N N N N N N -21.795 -12.613 15.717 -3.886  1.746  -3.015 H013 XNT 38 
XNT H012 H3  H  0 0 N N N N N N -21.774 -11.074 14.792 -3.122  0.140  -3.084 H012 XNT 39 
XNT H021 H4  H  0 0 N N N N N N -24.128 -11.344 14.187 -3.680  -0.228 -0.696 H021 XNT 40 
XNT H051 H5  H  0 0 N N N N N N -25.970 -11.234 13.827 -5.262  -0.916 -1.098 H051 XNT 41 
XNT H061 H6  H  0 0 N N N N N N -28.458 -11.359 13.603 -7.362  -2.070 -0.534 H061 XNT 42 
XNT H082 H7  H  0 0 N N N N N N -30.550 -12.396 14.238 -10.302 -0.362 0.848  H082 XNT 43 
XNT H081 H8  H  0 0 N N N N N N -30.380 -14.172 14.450 -9.705  -1.834 0.045  H081 XNT 44 
XNT H092 H9  H  0 0 N N N N N N -31.858 -12.949 16.141 -8.530  -2.493 2.127  H092 XNT 45 
XNT H091 H10 H  0 0 N N N N N N -30.583 -14.024 16.808 -9.127  -1.021 2.930  H091 XNT 46 
XNT H111 H11 H  0 0 N N N N N N -28.492 -14.698 16.256 -8.792  1.457  1.391  H111 XNT 47 
XNT H121 H12 H  0 0 N N N N N N -26.069 -14.588 16.485 -6.691  2.615  0.838  H121 XNT 48 
XNT H221 H13 H  0 0 N N N N N N -20.338 -10.185 8.768  3.021   -0.183 -2.555 H221 XNT 49 
XNT H231 H14 H  0 0 N N N N N N -19.390 -10.339 6.503  5.448   0.058  -2.237 H231 XNT 50 
XNT H252 H15 H  0 0 N N N N N N -19.640 -13.322 4.368  7.228   1.043  -0.919 H252 XNT 51 
XNT H251 H16 H  0 0 N N N N N N -18.812 -11.749 4.621  6.971   1.466  0.791  H251 XNT 52 
XNT H271 H17 H  0 0 N N N N N N -21.453 -9.635  4.774  9.616   -0.122 -0.271 H271 XNT 53 
XNT H273 H18 H  0 0 N N N N N N -20.051 -9.271  3.713  9.359   0.301  1.439  H273 XNT 54 
XNT H272 H19 H  0 0 N N N N N N -21.714 -9.277  3.034  9.778   -1.369 0.989  H272 XNT 55 
XNT H321 H20 H  0 0 N N N N N N -22.480 -13.811 8.172  2.397   0.852  1.560  H321 XNT 56 
XNT H341 H21 H  0 0 N N N N N N -21.399 -14.693 10.202 1.101   3.070  -0.134 H341 XNT 57 
XNT H351 H22 H  0 0 N N N N N N -21.806 -15.980 12.264 -0.944  4.407  -0.094 H351 XNT 58 
XNT H361 H23 H  0 0 N N N N N N -22.803 -14.917 14.253 -3.125  3.361  -0.537 H361 XNT 59 
XNT H102 H24 H  0 0 N N N N N N -30.731 -11.976 17.974 -10.853 -3.115 1.780  H102 XNT 60 
XNT H101 H26 H  0 0 N N N N N N -29.284 -12.087 17.227 -10.526 -2.920 3.399  H101 XNT 61 
XNT H151 H27 H  0 0 N N N N N N -23.339 -10.284 12.484 -1.640  -1.355 -1.295 H151 XNT 62 
XNT H2   H28 H  0 1 N N N N N N -22.847 -7.607  10.007 0.718   -4.200 -1.599 H2   XNT 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XNT O29  S26  DOUB N N 1  
XNT S26  O28  DOUB N N 2  
XNT S26  C27  SING N N 3  
XNT S26  C25  SING N N 4  
XNT C25  C24  SING N N 5  
XNT CL31 C30  SING N N 6  
XNT C24  C30  DOUB Y N 7  
XNT C24  C23  SING Y N 8  
XNT C30  C32  SING Y N 9  
XNT C23  C22  DOUB Y N 10 
XNT C32  C21  DOUB Y N 11 
XNT C22  C21  SING Y N 12 
XNT C21  C20  SING N N 13 
XNT O18  C17  DOUB N N 14 
XNT C17  O19  SING N N 15 
XNT C17  C16  SING N N 16 
XNT C20  C16  DOUB Y N 17 
XNT C20  C33  SING Y N 18 
XNT C16  N15  SING Y N 19 
XNT C33  C34  DOUB Y N 20 
XNT C33  C14  SING Y N 21 
XNT C34  C35  SING Y N 22 
XNT N15  C14  SING Y N 23 
XNT C14  C13  DOUB Y N 24 
XNT C35  C36  DOUB Y N 25 
XNT C13  C36  SING Y N 26 
XNT C13  C02  SING N N 27 
XNT C06  C05  DOUB Y N 28 
XNT C06  C07  SING Y N 29 
XNT C05  C04  SING Y N 30 
XNT C02  O03  SING N N 31 
XNT C02  C01  SING N N 32 
XNT C08  C07  SING N N 33 
XNT C08  C09  SING N N 34 
XNT C07  C11  DOUB Y N 35 
XNT C04  O03  SING N N 36 
XNT C04  C12  DOUB Y N 37 
XNT C11  C12  SING Y N 38 
XNT C09  N10  SING N N 39 
XNT C01  H011 SING N N 40 
XNT C01  H013 SING N N 41 
XNT C01  H012 SING N N 42 
XNT C02  H021 SING N N 43 
XNT C05  H051 SING N N 44 
XNT C06  H061 SING N N 45 
XNT C08  H082 SING N N 46 
XNT C08  H081 SING N N 47 
XNT C09  H092 SING N N 48 
XNT C09  H091 SING N N 49 
XNT C11  H111 SING N N 50 
XNT C12  H121 SING N N 51 
XNT C22  H221 SING N N 52 
XNT C23  H231 SING N N 53 
XNT C25  H252 SING N N 54 
XNT C25  H251 SING N N 55 
XNT C27  H271 SING N N 56 
XNT C27  H273 SING N N 57 
XNT C27  H272 SING N N 58 
XNT C32  H321 SING N N 59 
XNT C34  H341 SING N N 60 
XNT C35  H351 SING N N 61 
XNT C36  H361 SING N N 62 
XNT N10  H102 SING N N 63 
XNT N10  H101 SING N N 64 
XNT N15  H151 SING N N 65 
XNT O19  H2   SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XNT InChI            InChI                1.06  "InChI=1S/C27H27ClN2O5S/c1-16(35-20-10-6-17(7-11-20)12-13-29)21-4-3-5-22-24(26(27(31)32)30-25(21)22)18-8-9-19(23(28)14-18)15-36(2,33)34/h3-11,14,16,30H,12-13,15,29H2,1-2H3,(H,31,32)/t16-/m0/s1" 
XNT InChIKey         InChI                1.06  YNXHCVHXBOQWOI-INIZCTEOSA-N                                                                                                                                                                       
XNT SMILES_CANONICAL CACTVS               3.385 "C[C@H](Oc1ccc(CCN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(Cl)c4"                                                                                                                       
XNT SMILES           CACTVS               3.385 "C[CH](Oc1ccc(CCN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(Cl)c4"                                                                                                                        
XNT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)Cl)CS(=O)(=O)C)C(=O)O)Oc4ccc(cc4)CCN"                                                                                                                        
XNT SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)Cl)CS(=O)(=O)C)C(=O)O)Oc4ccc(cc4)CCN"                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           XNT 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{S})-1-[4-(2-azanylethyl)phenoxy]ethyl]-3-[3-chloranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XNT "Create component" 2023-06-08 PDBE 
XNT "Initial release"  2024-06-26 RCSB 
# 
