data_XJT
# 
_chem_comp.id                                    XJT 
_chem_comp.name                                  "3-{2-[3-({(6M)-2,4-diamino-6-[3-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H23 F3 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-23 
_chem_comp.pdbx_modified_date                    2023-12-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        476.448 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XJT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8F82 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XJT N1  N1  N 0 1 N N N N N N -1.397 -7.535  12.787 5.935  -3.574 1.095  N1  XJT 1  
XJT C2  C1  C 0 1 Y N N N N N -0.397 -10.905 12.676 2.424  -3.626 0.474  C2  XJT 2  
XJT C3  C2  C 0 1 Y N N N N N -0.682 -11.332 14.011 2.220  -2.344 -0.047 C3  XJT 3  
XJT C4  C3  C 0 1 N N N N N N -1.253 -13.675 13.853 0.174  -1.296 0.564  C4  XJT 4  
XJT C6  C4  C 0 1 N N N N N N -1.041 -15.095 15.955 -2.038 -0.225 1.016  C6  XJT 5  
XJT C7  C5  C 0 1 Y N N N N N -2.941 -15.163 17.417 -4.188 0.758  1.263  C7  XJT 6  
XJT C8  C6  C 0 1 Y N N N N N -2.114 -15.293 18.521 -3.854 1.020  2.584  C8  XJT 7  
XJT C9  C7  C 0 1 Y N N N N N -2.662 -15.333 19.790 -4.759 1.658  3.410  C9  XJT 8  
XJT C10 C8  C 0 1 Y N N N N N -4.022 -15.235 19.957 -5.997 2.034  2.922  C10 XJT 9  
XJT C11 C9  C 0 1 Y N N N N N -4.843 -15.091 18.852 -6.332 1.773  1.606  C11 XJT 10 
XJT C12 C10 C 0 1 Y N N N N N -4.332 -15.053 17.556 -5.431 1.137  0.776  C12 XJT 11 
XJT C13 C11 C 0 1 N N N N N N -5.226 -14.884 16.341 -5.796 0.853  -0.659 C13 XJT 12 
XJT C15 C12 C 0 1 N N N N N N -7.560 -15.098 15.348 -6.715 -0.854 -2.206 C15 XJT 13 
XJT C19 C13 C 0 1 Y N N N N N -1.480 -9.781  18.566 3.800  2.187  -0.742 C19 XJT 14 
XJT C20 C14 C 0 1 N N N N N N -1.024 -8.713  19.503 4.646  3.317  -0.214 C20 XJT 15 
XJT C23 C15 C 0 1 Y N N N N N -2.310 -11.699 16.770 2.235  0.119  -1.724 C23 XJT 16 
XJT C1  C16 C 0 1 Y N N N N N -1.146 -8.800  13.172 4.672  -3.155 0.707  C1  XJT 17 
XJT C14 C17 C 0 1 N N N N N N -6.672 -15.286 16.570 -6.349 -0.570 -0.772 C14 XJT 18 
XJT C16 C18 C 0 1 Y N N N N N -1.187 -10.381 14.884 3.322  -1.496 -0.167 C16 XJT 19 
XJT C17 C19 C 0 1 Y N N N N N -1.551 -10.627 16.312 3.162  -0.127 -0.712 C17 XJT 20 
XJT C18 C20 C 0 1 Y N N N N N -1.182 -9.670  17.217 3.949  0.916  -0.227 C18 XJT 21 
XJT C21 C21 C 0 1 Y N N N N N -2.235 -10.853 19.022 2.871  2.428  -1.739 C21 XJT 22 
XJT C22 C22 C 0 1 Y N N N N N -2.648 -11.815 18.114 2.091  1.396  -2.228 C22 XJT 23 
XJT C5  C23 C 0 1 N N N N N N -0.794 -14.971 14.472 -1.175 -0.909 -0.046 C5  XJT 24 
XJT F1  F1  F 0 1 N N N N N N -1.993 -7.870  19.827 4.312  4.501  -0.881 F1  XJT 25 
XJT F2  F2  F 0 1 N N N N N N -0.052 -7.950  18.998 4.413  3.473  1.156  F2  XJT 26 
XJT F3  F3  F 0 1 N N N N N N -0.538 -9.174  20.649 5.998  3.027  -0.428 F3  XJT 27 
XJT N2  N2  N 0 1 Y N N N N N -0.626 -9.652  12.271 3.650  -3.989 0.835  N2  XJT 28 
XJT N3  N3  N 0 1 N N N N N N 0.160  -11.760 11.776 1.359  -4.504 0.618  N3  XJT 29 
XJT N4  N4  N 0 1 Y N N N N N -1.423 -9.129  14.449 4.522  -1.936 0.219  N4  XJT 30 
XJT O1  O1  O 0 1 N N N N N N -0.453 -12.623 14.424 0.980  -1.934 -0.428 O1  XJT 31 
XJT O2  O2  O 0 1 N N N N N N -2.467 -15.106 16.136 -3.297 0.136  0.446  O2  XJT 32 
XJT O3  O3  O 0 1 N N N N N N -8.670 -15.660 15.354 -7.223 -2.049 -2.545 O3  XJT 33 
XJT O4  O4  O 0 1 N N N N N N -7.156 -14.394 14.399 -6.551 -0.005 -3.051 O4  XJT 34 
XJT H1  H1  H 0 1 N N N N N N -1.140 -7.421  11.827 6.693  -2.975 1.008  H1  XJT 35 
XJT H2  H2  H 0 1 N N N N N N -2.372 -7.341  12.896 6.060  -4.464 1.459  H2  XJT 36 
XJT H3  H3  H 0 1 N N N N N N -2.316 -13.505 14.079 0.681  -0.400 0.922  H3  XJT 37 
XJT H4  H4  H 0 1 N N N N N N -1.111 -13.707 12.763 0.013  -1.980 1.397  H4  XJT 38 
XJT H5  H5  H 0 1 N N N N N N -0.603 -16.030 16.336 -2.198 -0.909 1.849  H5  XJT 39 
XJT H6  H6  H 0 1 N N N N N N -0.598 -14.240 16.486 -1.531 0.671  1.375  H6  XJT 40 
XJT H7  H7  H 0 1 N N N N N N -1.044 -15.363 18.391 -2.888 0.726  2.966  H7  XJT 41 
XJT H8  H8  H 0 1 N N N N N N -2.020 -15.441 20.651 -4.500 1.862  4.439  H8  XJT 42 
XJT H9  H9  H 0 1 N N N N N N -4.450 -15.270 20.948 -6.703 2.532  3.570  H9  XJT 43 
XJT H10 H10 H 0 1 N N N N N N -5.910 -15.006 18.998 -7.300 2.068  1.227  H10 XJT 44 
XJT H11 H11 H 0 1 N N N N N N -4.821 -15.502 15.526 -6.554 1.564  -0.988 H11 XJT 45 
XJT H12 H12 H 0 1 N N N N N N -5.206 -13.825 16.043 -4.910 0.949  -1.286 H12 XJT 46 
XJT H13 H13 H 0 1 N N N N N N -2.642 -12.453 16.071 1.626  -0.686 -2.107 H13 XJT 47 
XJT H14 H14 H 0 1 N N N N N N -7.077 -14.675 17.391 -5.591 -1.281 -0.443 H14 XJT 48 
XJT H15 H15 H 0 1 N N N N N N -6.696 -16.348 16.857 -7.235 -0.666 -0.145 H15 XJT 49 
XJT H16 H16 H 0 1 N N N N N N -0.642 -8.802  16.870 4.675  0.730  0.551  H16 XJT 50 
XJT H17 H17 H 0 1 N N N N N N -2.496 -10.936 20.067 2.754  3.425  -2.136 H17 XJT 51 
XJT H18 H18 H 0 1 N N N N N N -3.234 -12.657 18.451 1.373  1.588  -3.012 H18 XJT 52 
XJT H19 H19 H 0 1 N N N N N N -1.322 -15.795 13.969 -1.014 -0.225 -0.879 H19 XJT 53 
XJT H20 H20 H 0 1 N N N N N N 0.288  -15.068 14.298 -1.682 -1.805 -0.405 H20 XJT 54 
XJT H21 H21 H 0 1 N N N N N N 0.314  -11.281 10.912 0.466  -4.231 0.356  H21 XJT 55 
XJT H22 H22 H 0 1 N N N N N N 1.032  -12.096 12.131 1.508  -5.392 0.980  H22 XJT 56 
XJT H23 H23 H 0 1 N N N N N N -9.129 -15.464 14.545 -7.443 -2.184 -3.477 H23 XJT 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XJT N3  C2  SING N N 1  
XJT N2  C2  DOUB Y N 2  
XJT N2  C1  SING Y N 3  
XJT C2  C3  SING Y N 4  
XJT N1  C1  SING N N 5  
XJT C1  N4  DOUB Y N 6  
XJT C4  O1  SING N N 7  
XJT C4  C5  SING N N 8  
XJT C3  O1  SING N N 9  
XJT C3  C16 DOUB Y N 10 
XJT O4  C15 DOUB N N 11 
XJT N4  C16 SING Y N 12 
XJT C5  C6  SING N N 13 
XJT C16 C17 SING N N 14 
XJT C15 O3  SING N N 15 
XJT C15 C14 SING N N 16 
XJT C6  O2  SING N N 17 
XJT O2  C7  SING N N 18 
XJT C17 C23 DOUB Y N 19 
XJT C17 C18 SING Y N 20 
XJT C13 C14 SING N N 21 
XJT C13 C12 SING N N 22 
XJT C23 C22 SING Y N 23 
XJT C18 C19 DOUB Y N 24 
XJT C7  C12 DOUB Y N 25 
XJT C7  C8  SING Y N 26 
XJT C12 C11 SING Y N 27 
XJT C22 C21 DOUB Y N 28 
XJT C8  C9  DOUB Y N 29 
XJT C19 C21 SING Y N 30 
XJT C19 C20 SING N N 31 
XJT C11 C10 DOUB Y N 32 
XJT F2  C20 SING N N 33 
XJT C20 F1  SING N N 34 
XJT C20 F3  SING N N 35 
XJT C9  C10 SING Y N 36 
XJT N1  H1  SING N N 37 
XJT N1  H2  SING N N 38 
XJT C4  H3  SING N N 39 
XJT C4  H4  SING N N 40 
XJT C6  H5  SING N N 41 
XJT C6  H6  SING N N 42 
XJT C8  H7  SING N N 43 
XJT C9  H8  SING N N 44 
XJT C10 H9  SING N N 45 
XJT C11 H10 SING N N 46 
XJT C13 H11 SING N N 47 
XJT C13 H12 SING N N 48 
XJT C23 H13 SING N N 49 
XJT C14 H14 SING N N 50 
XJT C14 H15 SING N N 51 
XJT C18 H16 SING N N 52 
XJT C21 H17 SING N N 53 
XJT C22 H18 SING N N 54 
XJT C5  H19 SING N N 55 
XJT C5  H20 SING N N 56 
XJT N3  H21 SING N N 57 
XJT N3  H22 SING N N 58 
XJT O3  H23 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XJT SMILES           ACDLabs              12.01 "Nc1nc(c2cc(ccc2)C(F)(F)F)c(OCCCOc2ccccc2CCC(=O)O)c(N)n1"                                                                                                                      
XJT InChI            InChI                1.06  "InChI=1S/C23H23F3N4O4/c24-23(25,26)16-7-3-6-15(13-16)19-20(21(27)30-22(28)29-19)34-12-4-11-33-17-8-2-1-5-14(17)9-10-18(31)32/h1-3,5-8,13H,4,9-12H2,(H,31,32)(H4,27,28,29,30)" 
XJT InChIKey         InChI                1.06  DHSSDBBWRIMIDY-UHFFFAOYSA-N                                                                                                                                                    
XJT SMILES_CANONICAL CACTVS               3.385 "Nc1nc(N)c(OCCCOc2ccccc2CCC(O)=O)c(n1)c3cccc(c3)C(F)(F)F"                                                                                                                      
XJT SMILES           CACTVS               3.385 "Nc1nc(N)c(OCCCOc2ccccc2CCC(O)=O)c(n1)c3cccc(c3)C(F)(F)F"                                                                                                                      
XJT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CCC(=O)O)OCCCOc2c(nc(nc2N)N)c3cccc(c3)C(F)(F)F"                                                                                                                    
XJT SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CCC(=O)O)OCCCOc2c(nc(nc2N)N)c3cccc(c3)C(F)(F)F"                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XJT "SYSTEMATIC NAME" ACDLabs              12.01 "3-{2-[3-({(6M)-2,4-diamino-6-[3-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid" 
XJT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[2-[3-[2,4-bis(azanyl)-6-[3-(trifluoromethyl)phenyl]pyrimidin-5-yl]oxypropoxy]phenyl]propanoic acid"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XJT "Create component" 2022-11-23 RCSB 
XJT "Initial release"  2023-12-13 RCSB 
# 
