data_X7T
# 
_chem_comp.id                                    X7T 
_chem_comp.name                                  "1-{2-[4-(2,4-difluorophenoxy)piperidin-1-yl]-3-{[(3R)-oxolan-3-yl]amino}-7,8-dihydropyrido[3,4-b]pyrazin-6(5H)-yl}ethan-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H29 F2 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-05 
_chem_comp.pdbx_modified_date                    2024-11-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        473.516 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X7T 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8T1W 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X7T C2  C1  C 0 1 Y N N N N N -9.328  1.682  5.607  6.187  2.002  -0.918 C2  X7T 1  
X7T C5  C2  C 0 1 Y N N N N N -11.328 0.861  7.340  6.665  -0.331 0.498  C5  X7T 2  
X7T C1  C3  C 0 1 Y N N N N N -9.199  0.519  6.349  7.485  1.563  -0.721 C1  X7T 3  
X7T C3  C4  C 0 1 Y N N N N N -10.480 2.445  5.730  5.126  1.276  -0.408 C3  X7T 4  
X7T C4  C5  C 0 1 Y N N N N N -11.481 2.039  6.610  5.363  0.109  0.301  C4  X7T 5  
X7T O2  O1  O 0 1 N N N N N N -12.226 11.009 3.541  -3.491 -5.183 -1.369 O2  X7T 6  
X7T O3  O2  O 0 1 N N N N N N -11.707 13.004 12.258 -7.125 2.208  1.051  O3  X7T 7  
X7T O1  O3  O 0 1 N N N N N N -12.639 2.807  6.716  4.320  -0.606 0.802  O1  X7T 8  
X7T C10 C6  C 0 1 N N N N N N -14.064 5.736  8.579  0.685  -0.032 1.556  C10 X7T 9  
X7T C11 C7  C 0 1 N N N N N N -13.991 4.393  7.866  2.094  -0.598 1.748  C11 X7T 10 
X7T C12 C8  C 0 1 Y N N N N N -13.254 8.015  8.551  -1.143 -0.016 0.066  C12 X7T 11 
X7T C13 C9  C 0 1 Y N N N N N -13.810 9.302  10.396 -2.728 1.643  -0.158 C13 X7T 12 
X7T C14 C10 C 0 1 N N N N N N -14.360 9.339  11.792 -3.006 3.122  -0.214 C14 X7T 13 
X7T C15 C11 C 0 1 N N N N N N -14.639 10.757 12.264 -4.361 3.397  -0.864 C15 X7T 14 
X7T C16 C12 C 0 1 N N N N N N -13.465 11.802 10.390 -5.166 1.055  -0.456 C16 X7T 15 
X7T C17 C13 C 0 1 Y N N N N N -13.389 10.452 9.730  -3.715 0.694  -0.261 C17 X7T 16 
X7T C18 C14 C 0 1 Y N N N N N -12.817 9.178  7.884  -2.153 -0.984 -0.030 C18 X7T 17 
X7T C19 C15 C 0 1 N N R N N N -12.894 9.936  5.528  -2.907 -3.339 0.056  C19 X7T 18 
X7T C20 C16 C 0 1 N N N N N N -11.824 10.806 4.900  -3.276 -3.767 -1.380 C20 X7T 19 
X7T C21 C17 C 0 1 N N N N N N -13.377 10.191 3.284  -3.329 -5.693 -0.036 C21 X7T 20 
X7T C22 C18 C 0 1 N N N N N N -13.373 9.129  4.352  -2.408 -4.672 0.679  C22 X7T 21 
X7T C23 C19 C 0 1 N N N N N N -12.605 12.285 12.674 -6.379 2.974  0.478  C23 X7T 22 
X7T C24 C20 C 0 1 N N N N N N -12.722 12.070 14.165 -6.604 4.461  0.578  C24 X7T 23 
X7T C6  C21 C 0 1 Y N N N N N -10.186 0.088  7.222  7.724  0.397  -0.014 C6  X7T 24 
X7T C7  C22 C 0 1 N N N N N N -12.557 3.934  7.608  3.016  -0.037 0.662  C7  X7T 25 
X7T C8  C23 C 0 1 N N N N N N -11.779 5.045  6.912  2.448  -0.395 -0.714 C8  X7T 26 
X7T C9  C24 C 0 1 N N N N N N -11.784 6.294  7.768  1.028  0.165  -0.835 C9  X7T 27 
X7T F1  F1  F 0 1 N N N N N N -8.084  -0.193 6.204  8.520  2.274  -1.221 F1  X7T 28 
X7T F2  F2  F 0 1 N N N N N N -12.296 0.481  8.177  6.898  -1.469 1.188  F2  X7T 29 
X7T N1  N1  N 0 1 N N N N N N -13.175 6.729  7.957  0.185  -0.402 0.225  N1  X7T 30 
X7T N2  N2  N 0 1 Y N N N N N -13.740 8.099  9.808  -1.460 1.264  -0.000 N2  X7T 31 
X7T N3  N3  N 0 1 N N N N N N -13.540 11.643 11.847 -5.349 2.495  -0.248 N3  X7T 32 
X7T N4  N4  N 0 1 Y N N N N N -12.897 10.389 8.480  -3.406 -0.600 -0.190 N4  X7T 33 
X7T N5  N5  N 0 1 N N N N N N -12.314 9.101  6.572  -1.837 -2.338 0.043  N5  X7T 34 
X7T H1  H1  H 0 1 N N N N N N -8.538  1.992  4.939  6.002  2.914  -1.466 H1  X7T 35 
X7T H2  H2  H 0 1 N N N N N N -10.600 3.347  5.148  4.114  1.620  -0.561 H2  X7T 36 
X7T H3  H3  H 0 1 N N N N N N -15.099 6.107  8.536  0.022  -0.440 2.319  H3  X7T 37 
X7T H4  H4  H 0 1 N N N N N N -13.767 5.599  9.629  0.715  1.054  1.643  H4  X7T 38 
X7T H5  H5  H 0 1 N N N N N N -14.511 4.480  6.900  2.471  -0.310 2.730  H5  X7T 39 
X7T H6  H6  H 0 1 N N N N N N -14.495 3.638  8.487  2.063  -1.685 1.675  H6  X7T 40 
X7T H7  H7  H 0 1 N N N N N N -15.299 8.766  11.818 -3.006 3.525  0.799  H7  X7T 41 
X7T H8  H8  H 0 1 N N N N N N -13.630 8.877  12.472 -2.224 3.613  -0.794 H8  X7T 42 
X7T H9  H9  H 0 1 N N N N N N -15.582 11.111 11.822 -4.650 4.434  -0.691 H9  X7T 43 
X7T H10 H10 H 0 1 N N N N N N -14.722 10.768 13.361 -4.302 3.204  -1.935 H10 X7T 44 
X7T H11 H11 H 0 1 N N N N N N -12.568 12.385 10.133 -5.472 0.793  -1.469 H11 X7T 45 
X7T H12 H12 H 0 1 N N N N N N -14.361 12.332 10.034 -5.776 0.504  0.261  H12 X7T 46 
X7T H13 H13 H 0 1 N N N N N N -13.709 10.559 5.925  -3.782 -2.963 0.587  H13 X7T 47 
X7T H14 H14 H 0 1 N N N N N N -10.849 10.299 4.938  -2.461 -3.522 -2.060 H14 X7T 48 
X7T H15 H15 H 0 1 N N N N N N -11.757 11.769 5.427  -4.187 -3.257 -1.695 H15 X7T 49 
X7T H16 H16 H 0 1 N N N N N N -14.296 10.793 3.346  -4.294 -5.749 0.468  H16 X7T 50 
X7T H17 H17 H 0 1 N N N N N N -13.306 9.732  2.287  -2.857 -6.675 -0.061 H17 X7T 51 
X7T H18 H18 H 0 1 N N N N N N -14.379 8.719  4.522  -1.360 -4.851 0.436  H18 X7T 52 
X7T H19 H19 H 0 1 N N N N N N -12.679 8.310  4.110  -2.568 -4.686 1.757  H19 X7T 53 
X7T H20 H20 H 0 1 N N N N N N -11.928 12.631 14.680 -5.982 4.869  1.375  H20 X7T 54 
X7T H21 H21 H 0 1 N N N N N N -13.705 12.424 14.510 -6.338 4.933  -0.368 H21 X7T 55 
X7T H22 H22 H 0 1 N N N N N N -12.619 10.998 14.390 -7.653 4.655  0.799  H22 X7T 56 
X7T H23 H23 H 0 1 N N N N N N -10.068 -0.822 7.792  8.738  0.057  0.139  H23 X7T 57 
X7T H24 H24 H 0 1 N N N N N N -12.068 3.663  8.556  3.079  1.046  0.761  H24 X7T 58 
X7T H25 H25 H 0 1 N N N N N N -10.741 4.718  6.751  3.077  0.038  -1.492 H25 X7T 59 
X7T H26 H26 H 0 1 N N N N N N -12.248 5.266  5.942  2.422  -1.479 -0.827 H26 X7T 60 
X7T H27 H27 H 0 1 N N N N N N -11.328 6.075  8.745  1.056  1.250  -0.736 H27 X7T 61 
X7T H28 H28 H 0 1 N N N N N N -11.212 7.089  7.267  0.615  -0.100 -1.808 H28 X7T 62 
X7T H29 H29 H 0 1 N N N N N N -12.419 8.152  6.276  -0.910 -2.618 0.086  H29 X7T 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X7T C21 O2  SING N N 1  
X7T C21 C22 SING N N 2  
X7T O2  C20 SING N N 3  
X7T C22 C19 SING N N 4  
X7T C20 C19 SING N N 5  
X7T C19 N5  SING N N 6  
X7T C2  C3  DOUB Y N 7  
X7T C2  C1  SING Y N 8  
X7T C3  C4  SING Y N 9  
X7T F1  C1  SING N N 10 
X7T C1  C6  DOUB Y N 11 
X7T N5  C18 SING N N 12 
X7T C4  O1  SING N N 13 
X7T C4  C5  DOUB Y N 14 
X7T O1  C7  SING N N 15 
X7T C8  C7  SING N N 16 
X7T C8  C9  SING N N 17 
X7T C6  C5  SING Y N 18 
X7T C5  F2  SING N N 19 
X7T C7  C11 SING N N 20 
X7T C9  N1  SING N N 21 
X7T C11 C10 SING N N 22 
X7T C18 N4  DOUB Y N 23 
X7T C18 C12 SING Y N 24 
X7T N1  C12 SING N N 25 
X7T N1  C10 SING N N 26 
X7T N4  C17 SING Y N 27 
X7T C12 N2  DOUB Y N 28 
X7T C17 C16 SING N N 29 
X7T C17 C13 DOUB Y N 30 
X7T N2  C13 SING Y N 31 
X7T C16 N3  SING N N 32 
X7T C13 C14 SING N N 33 
X7T C14 C15 SING N N 34 
X7T N3  C15 SING N N 35 
X7T N3  C23 SING N N 36 
X7T O3  C23 DOUB N N 37 
X7T C23 C24 SING N N 38 
X7T C2  H1  SING N N 39 
X7T C3  H2  SING N N 40 
X7T C10 H3  SING N N 41 
X7T C10 H4  SING N N 42 
X7T C11 H5  SING N N 43 
X7T C11 H6  SING N N 44 
X7T C14 H7  SING N N 45 
X7T C14 H8  SING N N 46 
X7T C15 H9  SING N N 47 
X7T C15 H10 SING N N 48 
X7T C16 H11 SING N N 49 
X7T C16 H12 SING N N 50 
X7T C19 H13 SING N N 51 
X7T C20 H14 SING N N 52 
X7T C20 H15 SING N N 53 
X7T C21 H16 SING N N 54 
X7T C21 H17 SING N N 55 
X7T C22 H18 SING N N 56 
X7T C22 H19 SING N N 57 
X7T C24 H20 SING N N 58 
X7T C24 H21 SING N N 59 
X7T C24 H22 SING N N 60 
X7T C6  H23 SING N N 61 
X7T C7  H24 SING N N 62 
X7T C8  H25 SING N N 63 
X7T C8  H26 SING N N 64 
X7T C9  H27 SING N N 65 
X7T C9  H28 SING N N 66 
X7T N5  H29 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X7T SMILES           ACDLabs              12.01 "Fc1ccc(OC2CCN(CC2)c2nc3CCN(Cc3nc2NC2CCOC2)C(C)=O)c(F)c1"                                                                                                                                 
X7T InChI            InChI                1.06  "InChI=1S/C24H29F2N5O3/c1-15(32)31-10-6-20-21(13-31)28-23(27-17-7-11-33-14-17)24(29-20)30-8-4-18(5-9-30)34-22-3-2-16(25)12-19(22)26/h2-3,12,17-18H,4-11,13-14H2,1H3,(H,27,28)/t17-/m1/s1" 
X7T InChIKey         InChI                1.06  HSWVJQBEXRKOBZ-QGZVFWFLSA-N                                                                                                                                                               
X7T SMILES_CANONICAL CACTVS               3.385 "CC(=O)N1CCc2nc(N3CCC(CC3)Oc4ccc(F)cc4F)c(N[C@@H]5CCOC5)nc2C1"                                                                                                                            
X7T SMILES           CACTVS               3.385 "CC(=O)N1CCc2nc(N3CCC(CC3)Oc4ccc(F)cc4F)c(N[CH]5CCOC5)nc2C1"                                                                                                                              
X7T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCc2c(nc(c(n2)N3CCC(CC3)Oc4ccc(cc4F)F)N[C@@H]5CCOC5)C1"                                                                                                                          
X7T SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCc2c(nc(c(n2)N3CCC(CC3)Oc4ccc(cc4F)F)NC5CCOC5)C1"                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X7T "SYSTEMATIC NAME" ACDLabs              12.01 "1-{2-[4-(2,4-difluorophenoxy)piperidin-1-yl]-3-{[(3R)-oxolan-3-yl]amino}-7,8-dihydropyrido[3,4-b]pyrazin-6(5H)-yl}ethan-1-one"          
X7T "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[2-[4-[2,4-bis(fluoranyl)phenoxy]piperidin-1-yl]-3-[[(3~{R})-oxolan-3-yl]amino]-7,8-dihydro-5~{H}-pyrido[3,4-b]pyrazin-6-yl]ethanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X7T "Create component" 2023-06-05 RCSB 
X7T "Initial release"  2024-12-04 RCSB 
# 
