data_WYT
# 
_chem_comp.id                                    WYT 
_chem_comp.name                                  "~{N}-[3-[5-chloranyl-2-[[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino]pyrimidin-4-yl]oxyphenyl]propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H29 Cl N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-24 
_chem_comp.pdbx_modified_date                    2024-05-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        496.989 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WYT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8P5J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WYT C1  C1  C  0 1 N N N N N N 50.115 24.895 8.380  -6.206 3.297  -3.611 C1  WYT 1  
WYT C2  C2  C  0 1 N N N N N N 50.194 25.664 9.690  -5.957 3.651  -2.144 C2  WYT 2  
WYT C3  C3  C  0 1 N N N N N N 50.016 27.179 9.595  -5.661 2.395  -1.367 C3  WYT 3  
WYT C4  C4  C  0 1 Y N N N N N 48.616 28.981 10.540 -5.221 1.290  0.694  C4  WYT 4  
WYT C5  C5  C  0 1 Y N N N N N 49.520 30.031 10.576 -4.585 0.200  0.117  C5  WYT 5  
WYT C6  C6  C  0 1 Y N N N N N 49.045 31.255 10.944 -4.407 -0.963 0.850  C6  WYT 6  
WYT O1  O1  O  0 1 N N N N N N 50.777 27.954 8.995  -5.650 1.321  -1.931 O1  WYT 7  
WYT O2  O2  O  0 1 N N N N N N 49.879 32.344 11.111 -3.784 -2.032 0.288  O2  WYT 8  
WYT O3  O3  O  0 1 N N N N N N 53.815 29.162 15.854 1.857  1.788  2.362  O3  WYT 9  
WYT N1  N1  N  0 1 N N N N N N 48.934 27.649 10.231 -5.409 2.464  -0.044 N1  WYT 10 
WYT C7  C7  C  0 1 Y N N N N N 47.716 31.510 11.155 -4.864 -1.034 2.159  C7  WYT 11 
WYT C8  C8  C  0 1 Y N N N N N 46.824 30.461 11.066 -5.497 0.052  2.732  C8  WYT 12 
WYT C9  C9  C  0 1 Y N N N N N 47.261 29.194 10.728 -5.677 1.213  2.005  C9  WYT 13 
WYT C10 C10 C  0 1 Y N N N N N 50.409 32.513 12.346 -2.437 -1.980 0.144  C10 WYT 14 
WYT N2  N2  N  0 1 Y N N N N N 50.847 31.476 13.037 -1.768 -0.877 0.457  N2  WYT 15 
WYT C11 C11 C  0 1 Y N N N N N 51.380 31.724 14.239 -0.452 -0.822 0.317  C11 WYT 16 
WYT N3  N3  N  0 1 Y N N N N N 51.462 32.936 14.803 0.242  -1.856 -0.136 N3  WYT 17 
WYT C12 C12 C  0 1 Y N N N N N 50.986 33.959 14.096 -0.360 -2.987 -0.467 C12 WYT 18 
WYT C13 C13 C  0 1 Y N N N N N 50.427 33.796 12.843 -1.733 -3.087 -0.330 C13 WYT 19 
WYT CL1 CL1 CL 0 0 N N N N N N 49.813 35.151 11.913 -2.562 -4.555 -0.745 CL1 WYT 20 
WYT N4  N4  N  0 1 N N N N N N 51.860 30.677 14.960 0.215  0.345  0.652  N4  WYT 21 
WYT C14 C14 C  0 1 Y N N N N N 51.845 29.308 14.635 1.589  0.465  0.397  C14 WYT 22 
WYT C15 C15 C  0 1 Y N N N N N 52.895 28.513 15.102 2.398  1.194  1.266  C15 WYT 23 
WYT C16 C16 C  0 1 Y N N N N N 52.918 27.174 14.781 3.754  1.311  1.012  C16 WYT 24 
WYT C17 C17 C  0 1 Y N N N N N 51.865 26.609 14.044 4.305  0.703  -0.108 C17 WYT 25 
WYT C18 C18 C  0 1 Y N N N N N 50.843 27.435 13.567 3.497  -0.022 -0.973 C18 WYT 26 
WYT C19 C19 C  0 1 Y N N N N N 50.832 28.771 13.866 2.144  -0.145 -0.718 C19 WYT 27 
WYT N5  N5  N  0 1 N N N N N N 51.847 25.254 13.678 5.675  0.822  -0.366 N5  WYT 28 
WYT C20 C20 C  0 1 N N N N N N 53.088 24.483 13.735 6.044  0.106  -1.595 C20 WYT 29 
WYT C21 C21 C  0 1 N N N N N N 52.915 22.997 13.549 7.531  0.326  -1.884 C21 WYT 30 
WYT N6  N6  N  0 1 N N N N N N 51.822 22.618 12.680 8.325  -0.149 -0.743 N6  WYT 31 
WYT C22 C22 C  0 1 N N N N N N 50.555 23.163 13.140 7.956  0.567  0.487  C22 WYT 32 
WYT C23 C23 C  0 1 N N N N N N 50.579 24.658 13.283 6.469  0.347  0.775  C23 WYT 33 
WYT C24 C24 C  0 1 N N N N N N 51.740 21.145 12.553 9.763  -0.025 -1.013 C24 WYT 34 
WYT C25 C25 C  0 1 N N N N N N 54.652 28.387 16.704 2.746  2.519  3.210  C25 WYT 35 
WYT H1  H1  H  0 1 N N N N N N 50.257 23.822 8.575  -7.055 2.617  -3.682 H1  WYT 36 
WYT H2  H2  H  0 1 N N N N N N 49.129 25.056 7.919  -6.420 4.206  -4.173 H2  WYT 37 
WYT H3  H3  H  0 1 N N N N N N 50.901 25.251 7.698  -5.319 2.815  -4.024 H3  WYT 38 
WYT H4  H4  H  0 1 N N N N N N 49.409 25.275 10.355 -5.108 4.331  -2.073 H4  WYT 39 
WYT H5  H5  H  0 1 N N N N N N 51.181 25.469 10.134 -6.844 4.133  -1.731 H5  WYT 40 
WYT H7  H6  H  0 1 N N N N N N 50.560 29.885 10.323 -4.231 0.258  -0.901 H7  WYT 41 
WYT H6  H7  H  0 1 N N N N N N 48.268 26.963 10.523 -5.358 3.327  0.395  H6  WYT 42 
WYT H8  H8  H  0 1 N N N N N N 47.374 32.508 11.386 -4.725 -1.940 2.730  H8  WYT 43 
WYT H9  H9  H  0 1 N N N N N N 45.776 30.631 11.262 -5.852 -0.006 3.750  H9  WYT 44 
WYT H10 H10 H  0 1 N N N N N N 46.557 28.383 10.612 -6.172 2.060  2.455  H10 WYT 45 
WYT H11 H11 H  0 1 N N N N N N 51.039 34.952 14.517 0.214  -3.825 -0.836 H11 WYT 46 
WYT H12 H12 H  0 1 N N N N N N 52.279 30.910 15.837 -0.268 1.078  1.063  H12 WYT 47 
WYT H13 H13 H  0 1 N N N N N N 53.747 26.558 15.097 4.383  1.876  1.685  H13 WYT 48 
WYT H14 H14 H  0 1 N N N N N N 50.056 27.016 12.958 3.927  -0.498 -1.842 H14 WYT 49 
WYT H15 H15 H  0 1 N N N N N N 50.035 29.402 13.502 1.517  -0.710 -1.392 H15 WYT 50 
WYT H16 H16 H  0 1 N N N N N N 53.553 24.654 14.717 5.852  -0.959 -1.467 H16 WYT 51 
WYT H17 H17 H  0 1 N N N N N N 53.757 24.852 12.944 5.452  0.485  -2.428 H17 WYT 52 
WYT H19 H18 H  0 1 N N N N N N 52.739 22.547 14.537 7.813  -0.227 -2.780 H19 WYT 53 
WYT H18 H19 H  0 1 N N N N N N 53.846 22.595 13.123 7.718  1.389  -2.040 H18 WYT 54 
WYT H20 H21 H  0 1 N N N N N N 49.773 22.892 12.416 8.548  0.188  1.320  H20 WYT 55 
WYT H21 H22 H  0 1 N N N N N N 50.317 22.721 14.119 8.148  1.632  0.358  H21 WYT 56 
WYT H23 H23 H  0 1 N N N N N N 50.295 25.091 12.313 6.187  0.900  1.671  H23 WYT 57 
WYT H22 H24 H  0 1 N N N N N N 49.830 24.933 14.041 6.282  -0.716 0.931  H22 WYT 58 
WYT H25 H25 H  0 1 N N N N N N 52.707 20.752 12.204 10.327 -0.446 -0.181 H25 WYT 59 
WYT H26 H26 H  0 1 N N N N N N 51.497 20.706 13.532 10.009 -0.563 -1.928 H26 WYT 60 
WYT H24 H27 H  0 1 N N N N N N 50.955 20.883 11.828 10.021 1.028  -1.131 H24 WYT 61 
WYT H29 H28 H  0 1 N N N N N N 55.341 29.051 17.246 3.517  1.850  3.591  H29 WYT 62 
WYT H27 H29 H  0 1 N N N N N N 54.031 27.836 17.426 3.212  3.323  2.640  H27 WYT 63 
WYT H28 H30 H  0 1 N N N N N N 55.231 27.674 16.098 2.187  2.942  4.045  H28 WYT 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WYT C1  C2  SING N N 1  
WYT O1  C3  DOUB N N 2  
WYT C3  C2  SING N N 3  
WYT C3  N1  SING N N 4  
WYT N1  C4  SING N N 5  
WYT C4  C5  DOUB Y N 6  
WYT C4  C9  SING Y N 7  
WYT C5  C6  SING Y N 8  
WYT C9  C8  DOUB Y N 9  
WYT C6  O2  SING N N 10 
WYT C6  C7  DOUB Y N 11 
WYT C8  C7  SING Y N 12 
WYT O2  C10 SING N N 13 
WYT CL1 C13 SING N N 14 
WYT C10 C13 DOUB Y N 15 
WYT C10 N2  SING Y N 16 
WYT C24 N6  SING N N 17 
WYT N6  C22 SING N N 18 
WYT N6  C21 SING N N 19 
WYT C13 C12 SING Y N 20 
WYT N2  C11 DOUB Y N 21 
WYT C22 C23 SING N N 22 
WYT C23 N5  SING N N 23 
WYT C21 C20 SING N N 24 
WYT C18 C19 DOUB Y N 25 
WYT C18 C17 SING Y N 26 
WYT N5  C20 SING N N 27 
WYT N5  C17 SING N N 28 
WYT C19 C14 SING Y N 29 
WYT C17 C16 DOUB Y N 30 
WYT C12 N3  DOUB Y N 31 
WYT C11 N3  SING Y N 32 
WYT C11 N4  SING N N 33 
WYT C14 N4  SING N N 34 
WYT C14 C15 DOUB Y N 35 
WYT C16 C15 SING Y N 36 
WYT C15 O3  SING N N 37 
WYT O3  C25 SING N N 38 
WYT C1  H1  SING N N 39 
WYT C1  H2  SING N N 40 
WYT C1  H3  SING N N 41 
WYT C2  H4  SING N N 42 
WYT C2  H5  SING N N 43 
WYT C5  H7  SING N N 44 
WYT N1  H6  SING N N 45 
WYT C7  H8  SING N N 46 
WYT C8  H9  SING N N 47 
WYT C9  H10 SING N N 48 
WYT C12 H11 SING N N 49 
WYT N4  H12 SING N N 50 
WYT C16 H13 SING N N 51 
WYT C18 H14 SING N N 52 
WYT C19 H15 SING N N 53 
WYT C20 H16 SING N N 54 
WYT C20 H17 SING N N 55 
WYT C21 H19 SING N N 56 
WYT C21 H18 SING N N 57 
WYT C22 H20 SING N N 58 
WYT C22 H21 SING N N 59 
WYT C23 H23 SING N N 60 
WYT C23 H22 SING N N 61 
WYT C24 H25 SING N N 62 
WYT C24 H26 SING N N 63 
WYT C24 H24 SING N N 64 
WYT C25 H29 SING N N 65 
WYT C25 H27 SING N N 66 
WYT C25 H28 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WYT InChI            InChI                1.06  "InChI=1S/C25H29ClN6O3/c1-4-23(33)28-17-6-5-7-19(14-17)35-24-20(26)16-27-25(30-24)29-21-9-8-18(15-22(21)34-3)32-12-10-31(2)11-13-32/h5-9,14-16H,4,10-13H2,1-3H3,(H,28,33)(H,27,29,30)" 
WYT InChIKey         InChI                1.06  SDGJBAUIGHSMRI-UHFFFAOYSA-N                                                                                                                                                            
WYT SMILES_CANONICAL CACTVS               3.385 "CCC(=O)Nc1cccc(Oc2nc(Nc3ccc(cc3OC)N4CCN(C)CC4)ncc2Cl)c1"                                                                                                                              
WYT SMILES           CACTVS               3.385 "CCC(=O)Nc1cccc(Oc2nc(Nc3ccc(cc3OC)N4CCN(C)CC4)ncc2Cl)c1"                                                                                                                              
WYT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1cccc(c1)Oc2c(cnc(n2)Nc3ccc(cc3OC)N4CCN(CC4)C)Cl"                                                                                                                            
WYT SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1cccc(c1)Oc2c(cnc(n2)Nc3ccc(cc3OC)N4CCN(CC4)C)Cl"                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           WYT 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[3-[5-chloranyl-2-[[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino]pyrimidin-4-yl]oxyphenyl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WYT "Create component" 2023-05-24 PDBE 
WYT "Initial release"  2024-06-05 RCSB 
# 
