data_VZT
# 
_chem_comp.id                                    VZT 
_chem_comp.name                                  "bis(4-fluorophenyl)methyl (1R,2S,5R)-2-({(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamoyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-3-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H33 F2 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-21 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        541.586 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VZT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8U9M 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VZT C10  C1  C 0 1 Y N N N N N -9.150  -18.907 -20.013 2.948  -0.779 -1.189 C10  VZT 1  
VZT C11  C2  C 0 1 Y N N N N N -9.107  -19.277 -21.347 2.799  -2.000 -1.819 C11  VZT 2  
VZT C12  C3  C 0 1 N N N N N N -9.751  -15.920 -18.006 0.596  0.637  0.394  C12  VZT 3  
VZT C13  C4  C 0 1 N N N N N N -8.248  -14.764 -19.658 0.447  3.101  1.000  C13  VZT 4  
VZT C14  C5  C 0 1 N N S N N N -9.247  -13.545 -17.803 -1.556 2.007  0.444  C14  VZT 5  
VZT C15  C6  C 0 1 N N N N N N -10.660 -13.036 -17.941 -2.163 0.957  -0.451 C15  VZT 6  
VZT C16  C7  C 0 1 N N S N N N -7.801  -13.313 -19.756 -0.346 4.123  0.157  C16  VZT 7  
VZT C17  C8  C 0 1 N N S N N N -12.639 -12.061 -16.927 -3.988 -0.536 -1.063 C17  VZT 8  
VZT C18  C9  C 0 1 N N N N N N -6.823  -12.934 -18.650 -1.660 4.662  0.726  C18  VZT 9  
VZT C19  C10 C 0 1 N N N N N N -13.527 -12.865 -15.960 -5.080 -1.289 -0.299 C19  VZT 10 
VZT C2   C11 C 0 1 N N N N N N -9.991  -17.761 -19.580 2.610  -0.639 0.273  C2   VZT 11 
VZT C20  C12 C 0 1 N N S N N N -13.614 -14.330 -16.389 -4.446 -2.082 0.845  C20  VZT 12 
VZT C21  C13 C 0 1 N N N N N N -14.391 -14.503 -17.693 -3.518 -3.187 0.289  C21  VZT 13 
VZT C22  C14 C 0 1 N N N N N N -15.186 -15.797 -17.507 -3.757 -4.335 1.295  C22  VZT 14 
VZT C23  C15 C 0 1 N N N N N N -6.307  -13.953 -17.620 -1.917 4.459  2.220  C23  VZT 15 
VZT C24  C16 C 0 1 N N N N N N -14.377 -15.190 -15.422 -5.505 -2.840 1.615  C24  VZT 16 
VZT C25  C17 C 0 1 N N N N N N -5.956  -11.684 -18.844 -2.202 5.964  0.134  C25  VZT 17 
VZT C26  C18 C 0 1 Y N N N N N -8.292  -20.332 -21.750 3.114  -2.131 -3.158 C26  VZT 18 
VZT C27  C19 C 0 1 Y N N N N N -7.511  -21.007 -20.817 3.579  -1.038 -3.869 C27  VZT 19 
VZT C28  C20 C 0 1 Y N N N N N -7.545  -20.629 -19.480 3.728  0.185  -3.237 C28  VZT 20 
VZT C29  C21 C 0 1 Y N N N N N -8.363  -19.574 -19.077 3.412  0.313  -1.898 C29  VZT 21 
VZT C3   C22 C 0 1 Y N N N N N -11.450 -18.062 -19.560 3.876  -0.688 1.088  C3   VZT 22 
VZT C34  C23 C 0 1 N N R N N N -8.312  -12.567 -18.524 -1.659 3.401  -0.212 C34  VZT 23 
VZT C4   C24 C 0 1 Y N N N N N -12.225 -17.249 -20.375 4.298  -1.884 1.639  C4   VZT 24 
VZT C5   C25 C 0 1 Y N N N N N -13.589 -17.438 -20.493 5.459  -1.930 2.386  C5   VZT 25 
VZT C6   C26 C 0 1 Y N N N N N -14.189 -18.462 -19.782 6.201  -0.777 2.584  C6   VZT 26 
VZT C7   C27 C 0 1 Y N N N N N -13.422 -19.298 -18.962 5.777  0.420  2.032  C7   VZT 27 
VZT C8   C28 C 0 1 N N N N N N -12.676 -10.575 -16.564 -4.599 0.134  -2.296 C8   VZT 28 
VZT C9   C29 C 0 1 Y N N N N N -12.042 -19.102 -18.847 4.618  0.463  1.281  C9   VZT 29 
VZT F30  F1  F 0 1 N N N N N N -15.519 -18.623 -19.921 7.336  -0.821 3.315  F30  VZT 30 
VZT F31  F2  F 0 1 N N N N N N -6.721  -22.026 -21.208 3.888  -1.165 -5.178 F31  VZT 31 
VZT N13  N1  N 0 1 N N N N N N -9.121  -14.832 -18.486 -0.087 1.782  0.589  N13  VZT 32 
VZT N16  N2  N 0 1 N N N N N N -11.251 -12.513 -16.869 -3.399 0.485  -0.194 N16  VZT 33 
VZT N23  N3  N 0 1 N N N N N N -15.219 -15.996 -16.069 -5.096 -4.099 1.847  N23  VZT 34 
VZT O1   O1  O 0 1 N N N N N N -9.383  -17.262 -18.407 1.939  0.629  0.496  O1   VZT 35 
VZT O26  O2  O 0 1 N N N N N N -14.220 -15.149 -14.214 -6.569 -2.379 1.970  O26  VZT 36 
VZT O33  O3  O 0 1 N N N N N N -10.638 -15.880 -17.186 0.001  -0.388 0.127  O33  VZT 37 
VZT O38  O4  O 0 1 N N N N N N -11.225 -13.128 -19.020 -1.539 0.536  -1.402 O38  VZT 38 
VZT O9   O5  O 0 1 N N N N N N -14.021 -10.057 -16.628 -5.690 0.965  -1.895 O9   VZT 39 
VZT H11  H1  H 0 1 N N N N N N -9.705  -18.748 -22.074 2.437  -2.853 -1.264 H11  VZT 40 
VZT H13  H2  H 0 1 N N N N N N -7.379  -15.425 -19.527 1.511  3.167  0.775  H13  VZT 41 
VZT H131 H3  H 0 0 N N N N N N -8.799  -15.057 -20.564 0.273  3.267  2.064  H131 VZT 42 
VZT H14  H4  H 0 1 N N N N N N -8.967  -13.627 -16.742 -2.040 2.001  1.421  H14  VZT 43 
VZT H16  H5  H 0 1 N N N N N N -7.759  -12.808 -20.732 0.208  4.715  -0.571 H16  VZT 44 
VZT H17  H6  H 0 1 N N N N N N -13.028 -12.186 -17.948 -3.215 -1.237 -1.377 H17  VZT 45 
VZT H191 H7  H 0 0 N N N N N N -13.099 -12.811 -14.948 -5.797 -0.575 0.107  H191 VZT 46 
VZT H19  H8  H 0 1 N N N N N N -14.538 -12.431 -15.954 -5.591 -1.973 -0.976 H19  VZT 47 
VZT H2   H9  H 0 1 N N N N N N -9.859  -16.989 -20.352 1.952  -1.455 0.573  H2   VZT 48 
VZT H20  H10 H 0 1 N N N N N N -12.598 -14.731 -16.517 -3.892 -1.418 1.509  H20  VZT 49 
VZT H211 H11 H 0 0 N N N N N N -15.069 -13.652 -17.856 -3.820 -3.480 -0.716 H211 VZT 50 
VZT H21  H12 H 0 1 N N N N N N -13.702 -14.591 -18.546 -2.477 -2.866 0.304  H21  VZT 51 
VZT H22  H13 H 0 1 N N N N N N -16.204 -15.690 -17.909 -3.724 -5.297 0.784  H22  VZT 52 
VZT H221 H14 H 0 0 N N N N N N -14.682 -16.639 -18.005 -3.010 -4.303 2.088  H221 VZT 53 
VZT H232 H15 H 0 0 N N N N N N -5.238  -14.145 -17.797 -1.192 5.036  2.795  H232 VZT 54 
VZT H23  H16 H 0 1 N N N N N N -6.444  -13.550 -16.606 -2.925 4.797  2.464  H23  VZT 55 
VZT H231 H17 H 0 0 N N N N N N -6.870  -14.893 -17.721 -1.818 3.402  2.466  H231 VZT 56 
VZT H252 H18 H 0 0 N N N N N N -4.900  -11.979 -18.930 -1.613 6.239  -0.741 H252 VZT 57 
VZT H251 H19 H 0 0 N N N N N N -6.267  -11.161 -19.761 -3.243 5.825  -0.158 H251 VZT 58 
VZT H25  H20 H 0 1 N N N N N N -6.080  -11.014 -17.980 -2.137 6.757  0.879  H25  VZT 59 
VZT H26  H21 H 0 1 N N N N N N -8.266  -20.627 -22.789 2.998  -3.086 -3.649 H26  VZT 60 
VZT H28  H22 H 0 1 N N N N N N -6.939  -21.151 -18.755 4.090  1.039  -3.791 H28  VZT 61 
VZT H29  H23 H 0 1 N N N N N N -8.386  -19.274 -18.040 3.528  1.267  -1.405 H29  VZT 62 
VZT H341 H24 H 0 0 N N N N N N -8.611  -11.513 -18.620 -2.112 3.462  -1.201 H341 VZT 63 
VZT H4   H25 H 0 1 N N N N N N -11.752 -16.452 -20.929 3.719  -2.783 1.485  H4   VZT 64 
VZT H5   H26 H 0 1 N N N N N N -14.178 -16.796 -21.131 5.788  -2.864 2.817  H5   VZT 65 
VZT H7   H27 H 0 1 N N N N N N -13.898 -20.098 -18.415 6.355  1.320  2.186  H7   VZT 66 
VZT H81  H28 H 0 1 N N N N N N -12.289 -10.445 -15.542 -3.842 0.742  -2.791 H81  VZT 67 
VZT H8   H29 H 0 1 N N N N N N -12.042 -10.017 -17.269 -4.958 -0.630 -2.984 H8   VZT 68 
VZT H9   H30 H 0 1 N N N N N N -11.446 -19.745 -18.217 4.288  1.396  0.850  H9   VZT 69 
VZT HN16 H31 H 0 0 N N N N N N -10.739 -12.429 -16.014 -3.898 0.821  0.567  HN16 VZT 70 
VZT HN23 H32 H 0 0 N N N N N N -15.808 -16.664 -15.614 -5.618 -4.766 2.320  HN23 VZT 71 
VZT HO9  H33 H 0 1 N N N N N N -14.017 -9.135  -16.399 -6.126 1.423  -2.627 HO9  VZT 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VZT O33 C12  DOUB N N 1  
VZT N13 C12  SING N N 2  
VZT C12 O1   SING N N 3  
VZT C14 N13  SING N N 4  
VZT C13 N13  SING N N 5  
VZT C14 C34  SING N N 6  
VZT C15 C14  SING N N 7  
VZT C34 C18  SING N N 8  
VZT C34 C16  SING N N 9  
VZT C23 C18  SING N N 10 
VZT C25 C18  SING N N 11 
VZT C18 C16  SING N N 12 
VZT C16 C13  SING N N 13 
VZT O38 C15  DOUB N N 14 
VZT N16 C15  SING N N 15 
VZT C17 N16  SING N N 16 
VZT C8  C17  SING N N 17 
VZT C19 C17  SING N N 18 
VZT O9  C8   SING N N 19 
VZT C20 C19  SING N N 20 
VZT C20 C21  SING N N 21 
VZT C24 C20  SING N N 22 
VZT C21 C22  SING N N 23 
VZT C22 N23  SING N N 24 
VZT N23 C24  SING N N 25 
VZT O26 C24  DOUB N N 26 
VZT O1  C2   SING N N 27 
VZT C3  C2   SING N N 28 
VZT C2  C10  SING N N 29 
VZT C3  C4   DOUB Y N 30 
VZT C9  C3   SING Y N 31 
VZT C4  C5   SING Y N 32 
VZT C5  C6   DOUB Y N 33 
VZT C6  C7   SING Y N 34 
VZT F30 C6   SING N N 35 
VZT C7  C9   DOUB Y N 36 
VZT C10 C11  DOUB Y N 37 
VZT C10 C29  SING Y N 38 
VZT C11 C26  SING Y N 39 
VZT C26 C27  DOUB Y N 40 
VZT C28 C27  SING Y N 41 
VZT C27 F31  SING N N 42 
VZT C29 C28  DOUB Y N 43 
VZT C11 H11  SING N N 44 
VZT C13 H13  SING N N 45 
VZT C13 H131 SING N N 46 
VZT C14 H14  SING N N 47 
VZT C16 H16  SING N N 48 
VZT C17 H17  SING N N 49 
VZT C19 H191 SING N N 50 
VZT C19 H19  SING N N 51 
VZT C2  H2   SING N N 52 
VZT C20 H20  SING N N 53 
VZT C21 H211 SING N N 54 
VZT C21 H21  SING N N 55 
VZT C22 H22  SING N N 56 
VZT C22 H221 SING N N 57 
VZT C23 H232 SING N N 58 
VZT C23 H23  SING N N 59 
VZT C23 H231 SING N N 60 
VZT C25 H252 SING N N 61 
VZT C25 H251 SING N N 62 
VZT C25 H25  SING N N 63 
VZT C26 H26  SING N N 64 
VZT C28 H28  SING N N 65 
VZT C29 H29  SING N N 66 
VZT C34 H341 SING N N 67 
VZT C4  H4   SING N N 68 
VZT C5  H5   SING N N 69 
VZT C7  H7   SING N N 70 
VZT C8  H81  SING N N 71 
VZT C8  H8   SING N N 72 
VZT C9  H9   SING N N 73 
VZT N16 HN16 SING N N 74 
VZT N23 HN23 SING N N 75 
VZT O9  HO9  SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VZT SMILES           ACDLabs              12.01 "O=C1NCCC1CC(CO)NC(=O)C1C2C(CN1C(=O)OC(c1ccc(F)cc1)c1ccc(F)cc1)C2(C)C"                                                                                                                                                             
VZT InChI            InChI                1.06  "InChI=1S/C29H33F2N3O5/c1-29(2)22-14-34(24(23(22)29)27(37)33-21(15-35)13-18-11-12-32-26(18)36)28(38)39-25(16-3-7-19(30)8-4-16)17-5-9-20(31)10-6-17/h3-10,18,21-25,35H,11-15H2,1-2H3,(H,32,36)(H,33,37)/t18-,21+,22-,23-,24-/m0/s1" 
VZT InChIKey         InChI                1.06  VEVIPXKCWNADLF-GXWFBMCDSA-N                                                                                                                                                                                                        
VZT SMILES_CANONICAL CACTVS               3.385 "CC1(C)[C@H]2CN([C@@H]([C@@H]12)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O)C(=O)OC(c4ccc(F)cc4)c5ccc(F)cc5"                                                                                                                                    
VZT SMILES           CACTVS               3.385 "CC1(C)[CH]2CN([CH]([CH]12)C(=O)N[CH](CO)C[CH]3CCNC3=O)C(=O)OC(c4ccc(F)cc4)c5ccc(F)cc5"                                                                                                                                            
VZT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)OC(c3ccc(cc3)F)c4ccc(cc4)F)C(=O)N[C@@H](C[C@@H]5CCNC5=O)CO)C"                                                                                                                                    
VZT SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)OC(c3ccc(cc3)F)c4ccc(cc4)F)C(=O)NC(CC5CCNC5=O)CO)C"                                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VZT "SYSTEMATIC NAME" ACDLabs              12.01 "bis(4-fluorophenyl)methyl (1R,2S,5R)-2-({(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamoyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-3-carboxylate"                           
VZT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "bis(4-fluorophenyl)methyl (1~{R},2~{S},5~{S})-6,6-dimethyl-2-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]-3-azabicyclo[3.1.0]hexane-3-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VZT "Create component" 2023-09-21 RCSB 
VZT "Initial release"  2024-09-25 RCSB 
VZT "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VZT 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C8 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
