data_VJT
#

_chem_comp.id                                   VJT
_chem_comp.name                                 "(2-(4-(beta-L-fucopyranosylethynyl)phenyl)-2-methylpropan-1-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H25 N O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2~{R},3~{S},4~{R},5~{S},6~{S})-2-[2-[4-(1-azanyl-2-methyl-propan-2-yl)phenyl]ethynyl]-6-methyl-oxane-3,4,5-triol"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-20
_chem_comp.pdbx_modified_date                   2022-05-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       319.395
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VJT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7OLU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VJT  N1   N1   N  0  1  N  N  N  6.292   8.439   1.319   7.580  -1.022  -0.034  N1   VJT   1  
VJT  C4   C1   C  0  1  N  N  S  5.938  15.234  10.976  -5.429   0.264  -0.257  C4   VJT   2  
VJT  C5   C2   C  0  1  N  N  S  7.196  14.426  10.748  -4.758   1.306   0.642  C5   VJT   3  
VJT  C6   C3   C  0  1  N  N  N  8.436  15.275  10.694  -5.252   2.703   0.261  C6   VJT   4  
VJT  C7   C4   C  0  1  N  N  N  5.978  12.228   8.056  -1.310   0.030   0.638  C7   VJT   5  
VJT  C8   C5   C  0  1  N  N  N  5.865  11.782   6.967  -0.147   0.071   0.489  C8   VJT   6  
VJT  C10  C6   C  0  1  Y  N  N  4.978  10.142   5.364   2.056  -0.998   0.589  C10  VJT   7  
VJT  C13  C7   C  0  1  Y  N  N  5.694  11.843   3.278   3.248   1.335  -0.322  C13  VJT   8  
VJT  C15  C8   C  0  1  N  N  N  4.738  10.300   1.483   5.513   0.275  -0.229  C15  VJT   9  
VJT  C17  C9   C  0  1  N  N  N  4.334  11.535   0.672   5.831   0.587  -1.692  C17  VJT  10  
VJT  O5   O1   O  0  1  N  N  N  7.101  13.762   9.479  -3.341   1.239   0.471  O5   VJT  11  
VJT  C3   C10  C  0  1  N  N  R  4.744  14.305  10.934  -4.884  -1.125   0.091  C3   VJT  12  
VJT  C2   C11  C  0  1  N  N  S  4.668  13.508   9.667  -3.360  -1.118  -0.065  C2   VJT  13  
VJT  C1   C12  C  0  1  N  N  R  6.011  12.817   9.401  -2.769  -0.022   0.826  C1   VJT  14  
VJT  O2   O2   O  0  1  N  N  N  3.610  12.571   9.743  -2.834  -2.387   0.327  O2   VJT  15  
VJT  O3   O3   O  0  1  N  N  N  3.531  15.056  11.093  -5.450  -2.095  -0.792  O3   VJT  16  
VJT  O4   O4   O  0  1  N  N  N  5.887  16.242   9.972  -5.145   0.560  -1.625  O4   VJT  17  
VJT  C9   C13  C  0  1  Y  N  N  5.622  11.346   5.634   1.273   0.121   0.306  C9   VJT  18  
VJT  C11  C14  C  0  1  Y  N  N  4.688   9.790   4.045   3.423  -0.942   0.414  C11  VJT  19  
VJT  C12  C15  C  0  1  Y  N  N  5.031  10.641   2.963   4.018   0.221  -0.040  C12  VJT  20  
VJT  C14  C16  C  0  1  Y  N  N  5.982  12.178   4.571   1.879   1.290  -0.157  C14  VJT  21  
VJT  C18  C17  C  0  1  N  N  N  6.053   9.799   0.853   6.124  -1.075   0.150  C18  VJT  22  
VJT  C16  C18  C  0  1  N  N  N  3.606   9.277   1.366   6.100   1.369   0.665  C16  VJT  23  
VJT  H1   H1   H  0  1  N  N  N  7.142   8.094   0.921   8.008  -1.903   0.209  H1   VJT  24  
VJT  H2   H2   H  0  1  N  N  N  6.366   8.437   2.316   7.816  -0.754  -0.978  H2   VJT  25  
VJT  H4   H4   H  0  1  N  N  N  5.991  15.698  11.972  -6.506   0.283  -0.095  H4   VJT  26  
VJT  H5   H5   H  0  1  N  N  N  7.299  13.686  11.556  -5.008   1.103   1.683  H5   VJT  27  
VJT  H6   H6   H  0  1  N  N  N  8.557  15.809  11.648  -6.333   2.753   0.390  H6   VJT  28  
VJT  H7   H7   H  0  1  N  N  N  9.312  14.633  10.519  -4.774   3.444   0.900  H7   VJT  29  
VJT  H8   H8   H  0  1  N  N  N  8.346  16.004   9.875  -5.001   2.905  -0.780  H8   VJT  30  
VJT  H9   H9   H  0  1  N  N  N  4.703   9.482   6.173   1.593  -1.906   0.947  H9   VJT  31  
VJT  H10  H10  H  0  1  N  N  N  5.981  12.514   2.481   3.718   2.239  -0.680  H10  VJT  32  
VJT  H11  H11  H  0  1  N  N  N  3.395  11.946   1.072   5.396   1.550  -1.962  H11  VJT  33  
VJT  H12  H12  H  0  1  N  N  N  5.126  12.295   0.742   6.912   0.627  -1.829  H12  VJT  34  
VJT  H13  H13  H  0  1  N  N  N  4.190  11.251  -0.381   5.413  -0.192  -2.329  H13  VJT  35  
VJT  H14  H14  H  0  1  N  N  N  4.837  13.600  11.773  -5.145  -1.372   1.120  H14  VJT  36  
VJT  H15  H15  H  0  1  N  N  N  4.478  14.203   8.836  -3.101  -0.921  -1.105  H15  VJT  37  
VJT  H16  H16  H  0  1  N  N  N  6.152  12.021  10.148  -2.994  -0.242   1.870  H16  VJT  38  
VJT  H17  H17  H  0  1  N  N  N  2.793  13.027   9.908  -1.872  -2.454   0.253  H17  VJT  39  
VJT  H18  H18  H  0  1  N  N  N  3.575  15.563  11.895  -5.148  -3.000  -0.629  H18  VJT  40  
VJT  H19  H19  H  0  1  N  N  N  5.105  16.768  10.090  -5.461   1.428  -1.913  H19  VJT  41  
VJT  H20  H20  H  0  1  N  N  N  4.193   8.851   3.844   4.031  -1.808   0.632  H20  VJT  42  
VJT  H21  H21  H  0  1  N  N  N  6.498  13.104   4.775   1.278   2.160  -0.376  H21  VJT  43  
VJT  H22  H22  H  0  1  N  N  N  6.885  10.450   1.161   5.705  -1.854  -0.487  H22  VJT  44  
VJT  H23  H23  H  0  1  N  N  N  5.967   9.807  -0.244   5.897  -1.297   1.192  H23  VJT  45  
VJT  H24  H24  H  0  1  N  N  N  3.866   8.375   1.939   5.873   1.147   1.708  H24  VJT  46  
VJT  H25  H25  H  0  1  N  N  N  2.677   9.711   1.766   7.181   1.409   0.529  H25  VJT  47  
VJT  H26  H26  H  0  1  N  N  N  3.461   9.010   0.309   5.665   2.332   0.396  H26  VJT  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VJT  C17  C15  SING  N  N   1  
VJT  C18  N1   SING  N  N   2  
VJT  C18  C15  SING  N  N   3  
VJT  C16  C15  SING  N  N   4  
VJT  C15  C12  SING  N  N   5  
VJT  C12  C13  DOUB  Y  N   6  
VJT  C12  C11  SING  Y  N   7  
VJT  C13  C14  SING  Y  N   8  
VJT  C11  C10  DOUB  Y  N   9  
VJT  C14  C9   DOUB  Y  N  10  
VJT  C10  C9   SING  Y  N  11  
VJT  C9   C8   SING  N  N  12  
VJT  C8   C7   TRIP  N  N  13  
VJT  C7   C1   SING  N  N  14  
VJT  C1   O5   SING  N  N  15  
VJT  C1   C2   SING  N  N  16  
VJT  O5   C5   SING  N  N  17  
VJT  C2   O2   SING  N  N  18  
VJT  C2   C3   SING  N  N  19  
VJT  O4   C4   SING  N  N  20  
VJT  C6   C5   SING  N  N  21  
VJT  C5   C4   SING  N  N  22  
VJT  C3   C4   SING  N  N  23  
VJT  C3   O3   SING  N  N  24  
VJT  N1   H1   SING  N  N  25  
VJT  N1   H2   SING  N  N  26  
VJT  C4   H4   SING  N  N  27  
VJT  C5   H5   SING  N  N  28  
VJT  C6   H6   SING  N  N  29  
VJT  C6   H7   SING  N  N  30  
VJT  C6   H8   SING  N  N  31  
VJT  C10  H9   SING  N  N  32  
VJT  C13  H10  SING  N  N  33  
VJT  C17  H11  SING  N  N  34  
VJT  C17  H12  SING  N  N  35  
VJT  C17  H13  SING  N  N  36  
VJT  C3   H14  SING  N  N  37  
VJT  C2   H15  SING  N  N  38  
VJT  C1   H16  SING  N  N  39  
VJT  O2   H17  SING  N  N  40  
VJT  O3   H18  SING  N  N  41  
VJT  O4   H19  SING  N  N  42  
VJT  C11  H20  SING  N  N  43  
VJT  C14  H21  SING  N  N  44  
VJT  C18  H22  SING  N  N  45  
VJT  C18  H23  SING  N  N  46  
VJT  C16  H24  SING  N  N  47  
VJT  C16  H25  SING  N  N  48  
VJT  C16  H26  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VJT  InChI             InChI                 1.03   "InChI=1S/C18H25NO4/c1-11-15(20)17(22)16(21)14(23-11)9-6-12-4-7-13(8-5-12)18(2,3)10-19/h4-5,7-8,11,14-17,20-22H,10,19H2,1-3H3/t11-,14+,15+,16+,17+/m0/s1"  
VJT  InChIKey          InChI                 1.03   OLKQUCDVBRXNDQ-WVRYCFJFSA-N  
VJT  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1O[C@H](C#Cc2ccc(cc2)C(C)(C)CN)[C@@H](O)[C@H](O)[C@@H]1O"  
VJT  SMILES            CACTVS                3.385  "C[CH]1O[CH](C#Cc2ccc(cc2)C(C)(C)CN)[CH](O)[CH](O)[CH]1O"  
VJT  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]1[C@H]([C@H]([C@@H]([C@H](O1)C#Cc2ccc(cc2)C(C)(C)CN)O)O)O"  
VJT  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1C(C(C(C(O1)C#Cc2ccc(cc2)C(C)(C)CN)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          VJT
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S},4~{R},5~{S},6~{S})-2-[2-[4-(1-azanyl-2-methyl-propan-2-yl)phenyl]ethynyl]-6-methyl-oxane-3,4,5-triol"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     VJT
_pdbx_chem_comp_synonyms.name        "(2~{R},3~{S},4~{R},5~{S},6~{S})-2-[2-[4-(1-azanyl-2-methyl-propan-2-yl)phenyl]ethynyl]-6-methyl-oxane-3,4,5-triol"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VJT  "Create component"  2021-05-20  PDBE  
VJT  "Initial release"   2022-06-01  RCSB  
##
