data_VGT
#

_chem_comp.id                                   VGT
_chem_comp.name                                 "4-((2-hydroxy-3-(phenylselanyl)propyl)thio)benzenesulfonamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H17 N O3 S2 Se"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-18
_chem_comp.pdbx_modified_date                   2022-05-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       402.390
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VGT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7OK8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VGT  C7   C1   C   0  1  Y  N  N  -1.813  11.007  13.443  -5.672  -1.356   1.196  C7   VGT   1  
VGT  C8   C2   C   0  1  N  N  N  -2.133   5.486  13.249  -0.013   0.709  -0.029  C8   VGT   2  
VGT  C9   C3   C   0  1  Y  N  N  -4.423   4.329  14.376   2.750   1.131   0.107  C9   VGT   3  
VGT  O1   O1   O   0  1  N  N  N  -5.464   1.019  18.135   7.654  -0.187  -0.509  O1   VGT   4  
VGT  C1   C4   C   0  1  N  N  N  -2.055   7.948  12.796  -2.461   0.208  -0.042  C1   VGT   5  
VGT  C5   C5   C   0  1  Y  N  N  -0.532  12.951  14.018  -6.951  -2.887  -0.129  C5   VGT   6  
VGT  C6   C6   C   0  1  Y  N  N  -1.588  12.368  13.338  -6.464  -2.485   1.101  C6   VGT   7  
VGT  C4   C7   C   0  1  Y  N  N   0.310  12.163  14.802  -6.646  -2.160  -1.264  C4   VGT   8  
VGT  C3   C8   C   0  1  Y  N  N   0.087  10.800  14.919  -5.848  -1.034  -1.170  C3   VGT   9  
VGT  C2   C9   C   0  1  Y  N  N  -0.982  10.232  14.250  -5.366  -0.629   0.060  C2   VGT  10  
VGT  O2   O2   O   0  1  N  N  N  -7.478   0.939  16.708   6.399  -2.318  -0.868  O2   VGT  11  
VGT  S1   S1   S   0  1  N  N  N  -6.037   0.853  16.821   6.665  -1.134  -0.130  S1   VGT  12  
VGT  N    N1   N   0  1  N  N  N  -5.526  -0.500  16.162   7.045  -1.617   1.408  N    VGT  13  
VGT  C12  C10  C   0  1  Y  N  N  -5.423   2.192  15.863   5.142  -0.253  -0.038  C12  VGT  14  
VGT  C11  C11  C   0  1  Y  N  N  -6.262   3.254  15.496   5.147   1.115   0.171  C11  VGT  15  
VGT  C10  C12  C   0  1  Y  N  N  -5.757   4.304  14.747   3.956   1.809   0.243  C10  VGT  16  
VGT  C13  C13  C   0  1  Y  N  N  -4.084   2.217  15.481   3.944  -0.930  -0.174  C13  VGT  17  
VGT  C14  C14  C   0  1  Y  N  N  -3.585   3.293  14.755   2.748  -0.243  -0.102  C14  VGT  18  
VGT  S    S2   S   0  1  N  N  N  -3.915   5.677  13.337   1.227   2.011   0.206  S    VGT  19  
VGT  C    C15  C   0  1  N  N  R  -1.527   6.586  12.394  -1.414   1.321   0.031  C    VGT  20  
VGT  O    O3   O   0  1  N  N  N  -1.961   6.397  11.034  -1.591   2.215  -1.070  O    VGT  21  
VGT  SE   SE1  SE  0  0  N  N  N  -1.391   8.403  14.585  -4.249   0.975   0.195  SE   VGT  22  
VGT  H1   H1   H   0  1  N  N  N  -2.628  10.548  12.903  -5.295  -1.040   2.157  H1   VGT  23  
VGT  H2   H2   H   0  1  N  N  N  -1.894   4.508  12.805   0.135   0.237  -1.000  H2   VGT  24  
VGT  H3   H3   H   0  1  N  N  N  -1.711   5.541  14.264   0.091  -0.038   0.758  H3   VGT  25  
VGT  H4   H4   H   0  1  N  N  N  -1.710   8.703  12.074  -2.402  -0.283  -1.014  H4   VGT  26  
VGT  H5   H5   H   0  1  N  N  N  -3.155   7.926  12.807  -2.272  -0.522   0.745  H5   VGT  27  
VGT  H6   H6   H   0  1  N  N  N  -0.361  14.015  13.941  -7.574  -3.766  -0.202  H6   VGT  28  
VGT  H7   H7   H   0  1  N  N  N  -2.237  12.976  12.725  -6.703  -3.053   1.988  H7   VGT  29  
VGT  H8   H8   H   0  1  N  N  N   1.141  12.617  15.321  -7.030  -2.471  -2.224  H8   VGT  30  
VGT  H9   H9   H   0  1  N  N  N   0.740  10.189  15.525  -5.610  -0.466  -2.057  H9   VGT  31  
VGT  H10  H10  H   0  1  N  N  N  -5.864  -1.278  16.692   7.578  -1.042   1.979  H10  VGT  32  
VGT  H11  H11  H   0  1  N  N  N  -5.866  -0.563  15.224   6.735  -2.475   1.737  H11  VGT  33  
VGT  H12  H12  H   0  1  N  N  N  -7.299   3.253  15.797   6.085   1.640   0.277  H12  VGT  34  
VGT  H13  H13  H   0  1  N  N  N  -6.410   5.111  14.449   3.961   2.876   0.406  H13  VGT  35  
VGT  H14  H14  H   0  1  N  N  N  -3.432   1.399  15.749   3.943  -1.997  -0.337  H14  VGT  36  
VGT  H15  H15  H   0  1  N  N  N  -2.540   3.321  14.485   1.813  -0.772  -0.209  H15  VGT  37  
VGT  H16  H16  H   0  1  N  N  N  -0.430   6.565  12.471  -1.531   1.869   0.966  H16  VGT  38  
VGT  H17  H17  H   0  1  N  N  N  -1.659   5.553  10.719  -1.501   1.795  -1.936  H17  VGT  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VGT  O    C    SING  N  N   1  
VGT  C    C1   SING  N  N   2  
VGT  C    C8   SING  N  N   3  
VGT  C1   SE   SING  N  N   4  
VGT  C8   S    SING  N  N   5  
VGT  S    C9   SING  N  N   6  
VGT  C6   C7   DOUB  Y  N   7  
VGT  C6   C5   SING  Y  N   8  
VGT  C7   C2   SING  Y  N   9  
VGT  C5   C4   DOUB  Y  N  10  
VGT  C2   SE   SING  N  N  11  
VGT  C2   C3   DOUB  Y  N  12  
VGT  C9   C10  DOUB  Y  N  13  
VGT  C9   C14  SING  Y  N  14  
VGT  C10  C11  SING  Y  N  15  
VGT  C14  C13  DOUB  Y  N  16  
VGT  C4   C3   SING  Y  N  17  
VGT  C13  C12  SING  Y  N  18  
VGT  C11  C12  DOUB  Y  N  19  
VGT  C12  S1   SING  N  N  20  
VGT  N    S1   SING  N  N  21  
VGT  O2   S1   DOUB  N  N  22  
VGT  S1   O1   DOUB  N  N  23  
VGT  C7   H1   SING  N  N  24  
VGT  C8   H2   SING  N  N  25  
VGT  C8   H3   SING  N  N  26  
VGT  C1   H4   SING  N  N  27  
VGT  C1   H5   SING  N  N  28  
VGT  C5   H6   SING  N  N  29  
VGT  C6   H7   SING  N  N  30  
VGT  C4   H8   SING  N  N  31  
VGT  C3   H9   SING  N  N  32  
VGT  N    H10  SING  N  N  33  
VGT  N    H11  SING  N  N  34  
VGT  C11  H12  SING  N  N  35  
VGT  C10  H13  SING  N  N  36  
VGT  C13  H14  SING  N  N  37  
VGT  C14  H15  SING  N  N  38  
VGT  C    H16  SING  N  N  39  
VGT  O    H17  SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VGT  InChI             InChI                 1.03   "InChI=1S/C15H17NO3S2Se/c16-21(18,19)14-8-6-13(7-9-14)20-10-12(17)11-22-15-4-2-1-3-5-15/h1-9,12,17H,10-11H2,(H2,16,18,19)/t12-/m1/s1"  
VGT  InChIKey          InChI                 1.03   QKCBBWIKTLMXPY-GFCCVEGCSA-N  
VGT  SMILES_CANONICAL  CACTVS                3.385  "N[S](=O)(=O)c1ccc(SC[C@@H](O)C[Se]c2ccccc2)cc1"  
VGT  SMILES            CACTVS                3.385  "N[S](=O)(=O)c1ccc(SC[CH](O)C[Se]c2ccccc2)cc1"  
VGT  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)[Se]C[C@@H](CSc2ccc(cc2)S(=O)(=O)N)O"  
VGT  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)[Se]CC(CSc2ccc(cc2)S(=O)(=O)N)O"  
#
_pdbx_chem_comp_identifier.comp_id          VGT
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-[(2~{R})-2-oxidanyl-3-phenylselanyl-propyl]sulfanylbenzenesulfonamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VGT  "Create component"  2021-05-18  PDBE  
VGT  "Initial release"   2022-06-01  RCSB  
##
