data_V7T
# 
_chem_comp.id                                    V7T 
_chem_comp.name                                  "(2R)-6-azanyl-2-carbamimidamido-hexanoic acid" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C7 H16 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-04-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        188.228 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V7T 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7OBV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V7T N1  N1  N 0 1 N N N N N N 6.240  -9.972  4.880 2.573  -1.359 1.255  N1  V7T 1  
V7T N2  N2  N 0 1 N N N N N N 4.685  -10.195 3.111 2.341  -2.810 -0.540 N2  V7T 2  
V7T CA  CA  C 0 1 N N R Y N N 3.503  -12.375 4.534 0.770  0.473  0.243  C1  V7T 3  
V7T CD  CD  C 0 1 N N N N N N 0.827  -14.459 6.421 -3.057 0.376  -0.174 C5  V7T 4  
V7T CE  CE  C 0 1 N N N N N N -0.320 -15.344 5.964 -4.101 -0.644 0.287  C6  V7T 5  
V7T NZ  NZ  N 0 1 N N N N N N -1.246 -14.640 5.087 -5.436 -0.201 -0.134 N3  V7T 6  
V7T CG  CG  C 0 1 N N N N N N 1.647  -13.958 5.253 -1.665 -0.085 0.265  C4  V7T 7  
V7T CB  CB  C 0 1 N N N N N N 2.779  -13.056 5.694 -0.622 0.934  -0.195 C3  V7T 8  
V7T C2  C2  C 0 1 N N N N N N 5.138  -10.524 4.289 2.019  -1.642 0.110  C2  V7T 9  
V7T N   N   N 0 1 N N N Y Y N 4.544  -11.517 5.068 1.112  -0.772 -0.449 N   V7T 10 
V7T C   C   C 0 1 N N N Y N Y 4.145  -13.411 3.612 1.783  1.535  -0.101 C   V7T 11 
V7T O   O   O 0 1 N N N Y N Y 5.094  -14.079 4.013 2.697  1.278  -0.848 O   V7T 12 
V7T H1  H1  H 0 1 N N N N N N 6.429  -10.379 5.774 2.346  -0.535 1.713  H1  V7T 13 
V7T H4  H2  H 0 1 N N N N N N 3.883  -10.660 2.736 2.980  -3.424 -0.146 H2  V7T 14 
V7T H3  H3  H 0 1 N N N N N N 5.139  -9.477  2.583 1.928  -3.020 -1.392 H3  V7T 15 
V7T HA  HA  H 0 1 N N N Y N N 2.779  -11.780 3.958 0.774  0.303  1.320  H4  V7T 16 
V7T HD2 HD2 H 0 1 N N N N N N 0.416  -13.595 6.965 -3.086 0.460  -1.260 H5  V7T 17 
V7T HD3 HD3 H 0 1 N N N N N N 1.479  -15.038 7.092 -3.275 1.346  0.272  H6  V7T 18 
V7T HE2 HE2 H 0 1 N N N N N N 0.094  -16.207 5.422 -3.882 -1.614 -0.159 H7  V7T 19 
V7T HE3 HE3 H 0 1 N N N N N N -0.870 -15.696 6.849 -4.071 -0.728 1.373  H8  V7T 20 
V7T HZ1 HZ1 H 0 1 N N N N N N -1.982 -15.259 4.812 -5.470 -0.053 -1.132 H9  V7T 21 
V7T HZ2 HZ2 H 0 1 N Y N N N N -1.634 -13.856 5.572 -6.144 -0.859 0.158  H10 V7T 22 
V7T HG2 HG2 H 0 1 N N N N N N 2.070  -14.823 4.720 -1.636 -0.170 1.351  H12 V7T 23 
V7T HG3 HG3 H 0 1 N N N N N N 0.989  -13.395 4.574 -1.447 -1.056 -0.181 H13 V7T 24 
V7T HB2 HB2 H 0 1 N N N N N N 3.508  -13.661 6.253 -0.840 1.905  0.251  H14 V7T 25 
V7T HB3 HB3 H 0 1 N N N N N N 2.367  -12.277 6.353 -0.651 1.019  -1.282 H15 V7T 26 
V7T H   H   H 0 1 N Y N Y Y N 4.842  -11.640 6.015 0.700  -0.982 -1.301 H16 V7T 27 
V7T OXT OXT O 0 1 N Y N Y N Y 3.629  -13.547 2.388 1.669  2.766  0.422  O1  V7T 28 
V7T HXT HXT H 0 1 N Y N Y N Y 4.107  -14.218 1.915 2.342  3.413  0.172  H11 V7T 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V7T N1  C2  DOUB N N 1  
V7T N2  C2  SING N N 2  
V7T CA  CB  SING N N 3  
V7T CA  N   SING N N 4  
V7T CA  C   SING N N 5  
V7T CD  CE  SING N N 6  
V7T CD  CG  SING N N 7  
V7T CE  NZ  SING N N 8  
V7T CG  CB  SING N N 9  
V7T C2  N   SING N N 10 
V7T C   O   DOUB N N 11 
V7T N1  H1  SING N N 12 
V7T N2  H4  SING N N 13 
V7T N2  H3  SING N N 14 
V7T CA  HA  SING N N 15 
V7T CD  HD2 SING N N 16 
V7T CD  HD3 SING N N 17 
V7T CE  HE2 SING N N 18 
V7T CE  HE3 SING N N 19 
V7T NZ  HZ1 SING N N 20 
V7T NZ  HZ2 SING N N 21 
V7T CG  HG2 SING N N 22 
V7T CG  HG3 SING N N 23 
V7T CB  HB2 SING N N 24 
V7T CB  HB3 SING N N 25 
V7T N   H   SING N N 26 
V7T C   OXT SING N N 27 
V7T OXT HXT SING N N 28 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V7T InChI            InChI                1.03  "InChI=1S/C7H16N4O2/c8-4-2-1-3-5(6(12)13)11-7(9)10/h5H,1-4,8H2,(H,12,13)(H4,9,10,11)/t5-/m1/s1" 
V7T InChIKey         InChI                1.03  FCYNCKFWUCHGHB-RXMQYKEDSA-N                                                                     
V7T SMILES_CANONICAL CACTVS               3.385 "NCCCC[C@@H](NC(N)=N)C(O)=O"                                                                    
V7T SMILES           CACTVS               3.385 "NCCCC[CH](NC(N)=N)C(O)=O"                                                                      
V7T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/N[C@H](CCCCN)C(=O)O"                                                               
V7T SMILES           "OpenEye OEToolkits" 2.0.7 "C(CCN)CC(C(=O)O)NC(=N)N"                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           V7T 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-6-azanyl-2-carbamimidamido-hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V7T "Create component"     2021-04-23 PDBE 
V7T "Modify coordinates"   2021-04-23 PDBE 
V7T "Modify linking type"  2021-04-28 PDBE 
V7T "Modify internal type" 2021-04-29 PDBE 
V7T "Initial release"      2022-04-06 RCSB 
V7T "Modify backbone"      2023-11-03 PDBE 
V7T "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            V7T 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
