data_V3T
# 
_chem_comp.id                                    V3T 
_chem_comp.name                                  "4-methanoyl-~{N}-[(1-methylimidazol-2-yl)methyl]benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H13 N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-04-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        243.261 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V3T 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7O5U 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V3T C01 C1  C 0 1 N N N N N N 23.902 23.080 2.381  3.658  -0.228 -2.151 C01 V3T 1  
V3T C03 C2  C 0 1 Y N N N N N 25.340 24.534 3.702  4.766  -1.456 -0.237 C03 V3T 2  
V3T C04 C3  C 0 1 Y N N N N N 26.667 24.766 3.873  4.674  -1.396 1.105  C04 V3T 3  
V3T C06 C4  C 0 1 Y N N N N N 26.419 23.200 2.396  3.306  0.077  0.320  C06 V3T 4  
V3T C07 C5  C 0 1 N N N N N N 26.809 22.125 1.367  2.276  1.173  0.243  C07 V3T 5  
V3T C09 C6  C 0 1 N N N N N N 25.531 20.865 -0.423 -0.149 1.378  0.119  C09 V3T 6  
V3T C10 C7  C 0 1 Y N N N N N 24.483 20.973 -1.517 -1.503 0.780  0.067  C10 V3T 7  
V3T C11 C8  C 0 1 Y N N N N N 23.448 20.055 -1.552 -2.627 1.604  -0.008 C11 V3T 8  
V3T C12 C9  C 0 1 Y N N N N N 22.475 20.163 -2.531 -3.887 1.049  -0.057 C12 V3T 9  
V3T C13 C10 C 0 1 Y N N N N N 22.544 21.187 -3.460 -4.040 -0.340 -0.032 C13 V3T 10 
V3T C14 C11 C 0 1 Y N N N N N 23.574 22.114 -3.417 -2.913 -1.165 0.043  C14 V3T 11 
V3T C15 C12 C 0 1 Y N N N N N 24.544 22.011 -2.437 -1.654 -0.608 0.087  C15 V3T 12 
V3T C16 C13 C 0 1 N N N N N N 21.465 21.284 -4.532 -5.387 -0.935 -0.078 C16 V3T 13 
V3T N02 N1  N 0 1 Y N N N N N 25.193 23.587 2.811  3.898  -0.522 -0.736 N02 V3T 14 
V3T N05 N2  N 0 1 Y N N N N N 27.311 23.945 3.071  3.771  -0.454 1.417  N05 V3T 15 
V3T N08 N3  N 0 1 N N N N N N 25.858 22.089 0.274  0.936  0.582  0.191  N08 V3T 16 
V3T O17 O1  O 0 1 N N N N N N 26.046 19.835 -0.141 -0.017 2.585  0.096  O17 V3T 17 
V3T H1  H1  H 0 1 N N N N N N 23.102 23.612 2.917  4.345  0.550  -2.482 H1  V3T 18 
V3T H2  H2  H 0 1 N N N N N N 23.788 23.240 1.299  3.817  -1.129 -2.742 H2  V3T 19 
V3T H3  H3  H 0 1 N N N N N N 23.839 22.004 2.602  2.631  0.116  -2.280 H3  V3T 20 
V3T H4  H4  H 0 1 N N N N N N 24.540 25.046 4.216  5.405  -2.112 -0.810 H4  V3T 21 
V3T H5  H5  H 0 1 N N N N N N 27.111 25.489 4.542  5.230  -2.000 1.807  H5  V3T 22 
V3T H6  H6  H 0 1 N N N N N N 26.827 21.143 1.861  2.357  1.811  1.123  H6  V3T 23 
V3T H7  H7  H 0 1 N N N N N N 27.808 22.354 0.968  2.445  1.769  -0.655 H7  V3T 24 
V3T H8  H8  H 0 1 N N N N N N 23.400 19.261 -0.822 -2.509 2.677  -0.028 H8  V3T 25 
V3T H9  H9  H 0 1 N N N N N N 21.664 19.450 -2.570 -4.756 1.687  -0.114 H9  V3T 26 
V3T H10 H10 H 0 1 N N N N N N 23.618 22.911 -4.144 -3.030 -2.238 0.063  H10 V3T 27 
V3T H11 H11 H 0 1 N N N N N N 25.345 22.734 -2.387 -0.783 -1.244 0.144  H11 V3T 28 
V3T H12 H12 H 0 1 N N N N N N 20.440 21.004 -4.336 -6.257 -0.298 -0.136 H12 V3T 29 
V3T H15 H15 H 0 1 N N N N N N 25.413 22.939 -0.008 0.831  -0.382 0.209  H15 V3T 30 
V3T O1  O2  O 0 1 N Y N N N N 21.884 21.766 -5.810 -5.519 -2.140 -0.052 O1  V3T 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V3T C16 C13 SING N N 1  
V3T C13 C14 DOUB Y N 2  
V3T C13 C12 SING Y N 3  
V3T C14 C15 SING Y N 4  
V3T C12 C11 DOUB Y N 5  
V3T C15 C10 DOUB Y N 6  
V3T C11 C10 SING Y N 7  
V3T C10 C09 SING N N 8  
V3T C09 O17 DOUB N N 9  
V3T C09 N08 SING N N 10 
V3T N08 C07 SING N N 11 
V3T C07 C06 SING N N 12 
V3T C01 N02 SING N N 13 
V3T C06 N02 SING Y N 14 
V3T C06 N05 DOUB Y N 15 
V3T N02 C03 SING Y N 16 
V3T N05 C04 SING Y N 17 
V3T C03 C04 DOUB Y N 18 
V3T C01 H1  SING N N 19 
V3T C01 H2  SING N N 20 
V3T C01 H3  SING N N 21 
V3T C03 H4  SING N N 22 
V3T C04 H5  SING N N 23 
V3T C07 H6  SING N N 24 
V3T C07 H7  SING N N 25 
V3T C11 H8  SING N N 26 
V3T C12 H9  SING N N 27 
V3T C14 H10 SING N N 28 
V3T C15 H11 SING N N 29 
V3T C16 H12 SING N N 30 
V3T N08 H15 SING N N 31 
V3T C16 O1  DOUB N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V3T InChI            InChI                1.03  "InChI=1S/C13H13N3O2/c1-16-7-6-14-12(16)8-15-13(18)11-4-2-10(9-17)3-5-11/h2-7,9H,8H2,1H3,(H,15,18)" 
V3T InChIKey         InChI                1.03  NFZAMDZEFTZCEP-UHFFFAOYSA-N                                                                         
V3T SMILES_CANONICAL CACTVS               3.385 "Cn1ccnc1CNC(=O)c2ccc(C=O)cc2"                                                                      
V3T SMILES           CACTVS               3.385 "Cn1ccnc1CNC(=O)c2ccc(C=O)cc2"                                                                      
V3T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1ccnc1CNC(=O)c2ccc(cc2)C=O"                                                                      
V3T SMILES           "OpenEye OEToolkits" 2.0.7 "Cn1ccnc1CNC(=O)c2ccc(cc2)C=O"                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           V3T 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-methanoyl-~{N}-[(1-methylimidazol-2-yl)methyl]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V3T "Create component" 2021-04-09 PDBE 
V3T "Initial release"  2021-06-09 RCSB 
V3T "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            V3T 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C16 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
