data_UFT
# 
_chem_comp.id                                    UFT 
_chem_comp.name                                  
;2'-deoxy-2'-fluorouridine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H12 F N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               DU 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-07-07 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        326.172 
_chem_comp.one_letter_code                       U 
_chem_comp.three_letter_code                     UFT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3DD2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UFT OP3    OP3    O 0 1 N Y N N N N 1.791  -48.091 -34.440 4.622  -2.050 -1.261 OP3    UFT 1  
UFT P      P      P 0 1 N N N N N N 0.500  -47.894 -33.504 4.266  -1.014 -0.082 P      UFT 2  
UFT OP1    OP1    O 0 1 N N N N N N -0.580 -48.564 -34.236 4.116  -1.750 1.194  OP1    UFT 3  
UFT OP2    OP2    O 0 1 N N N N N N 0.338  -46.469 -33.109 5.450  0.068  0.058  OP2    UFT 4  
UFT "O5'"  "O5'"  O 0 1 N N N N N N 0.864  -48.742 -32.203 2.888  -0.258 -0.430 "O5'"  UFT 5  
UFT N1     N1     N 0 1 N N N N N N 0.588  -52.195 -30.324 -2.364 -0.139 -0.132 N1     UFT 6  
UFT C6     C6     C 0 1 N N N N N N -0.041 -51.722 -31.465 -2.320 -0.860 1.031  C6     UFT 7  
UFT C2     C2     C 0 1 N N N N N N 0.589  -53.561 -30.030 -3.401 -0.269 -0.979 C2     UFT 8  
UFT O2     O2     O 0 1 N N N N N N 1.144  -54.037 -29.042 -3.422 0.385  -2.004 O2     UFT 9  
UFT N3     N3     N 0 1 N N N N N N -0.082 -54.350 -30.938 -4.415 -1.112 -0.709 N3     UFT 10 
UFT C4     C4     C 0 1 N N N N N N -0.739 -53.936 -32.087 -4.406 -1.843 0.424  C4     UFT 11 
UFT O4     O4     O 0 1 N N N N N N -1.351 -54.767 -32.772 -5.323 -2.606 0.670  O4     UFT 12 
UFT C5     C5     C 0 1 N N N N N N -0.683 -52.522 -32.330 -3.326 -1.709 1.330  C5     UFT 13 
UFT "F2'"  "F2'"  F 0 1 N N N N N N 3.357  -51.041 -28.359 -1.867 3.074  0.073  "F2'"  UFT 14 
UFT "C2'"  "C2'"  C 0 1 N N R N N N 2.793  -51.276 -29.586 -1.226 1.937  0.577  "C2'"  UFT 15 
UFT "C5'"  "C5'"  C 0 1 N N N N N N 1.425  -48.104 -31.048 2.249  0.650  0.470  "C5'"  UFT 16 
UFT "C4'"  "C4'"  C 0 1 N N R N N N 1.920  -49.126 -30.059 0.967  1.186  -0.170 "C4'"  UFT 17 
UFT "O4'"  "O4'"  O 0 1 N N N N N N 0.815  -49.957 -29.612 0.001  0.124  -0.328 "O4'"  UFT 18 
UFT "C1'"  "C1'"  C 0 1 N N R N N N 1.276  -51.283 -29.388 -1.276 0.787  -0.453 "C1'"  UFT 19 
UFT "C3'"  "C3'"  C 0 1 N N R N N N 2.971  -50.109 -30.558 0.283  2.206  0.767  "C3'"  UFT 20 
UFT "O3'"  "O3'"  O 0 1 N N N N N N 4.251  -49.482 -30.526 0.607  3.542  0.376  "O3'"  UFT 21 
UFT HOP3   HOP3   H 0 0 N Y N N N N 1.520  -48.130 -35.350 5.442  -2.543 -1.118 HOP3   UFT 22 
UFT HOP2   HOP2   H 0 0 N N N N N N 0.303  -46.404 -32.162 5.605  0.588  -0.742 HOP2   UFT 23 
UFT H6     H6     H 0 1 N N N N N N -0.013 -50.661 -31.667 -1.484 -0.750 1.706  H6     UFT 24 
UFT H5     H5     H 0 1 N N N N N N -1.156 -52.104 -33.206 -3.304 -2.284 2.243  H5     UFT 25 
UFT "H2'"  "H2'"  H 0 1 N N N N N N 3.253  -52.198 -29.972 -1.683 1.628  1.517  "H2'"  UFT 26 
UFT "H5'"  "H5'"  H 0 1 N N N N N N 2.268  -47.471 -31.362 2.002  0.130  1.396  "H5'"  UFT 27 
UFT "H5'A" "H5'A" H 0 0 N N N N N N 0.645  -47.496 -30.567 2.922  1.480  0.688  "H5'A" UFT 28 
UFT "H4'"  "H4'"  H 0 1 N N N N N N 2.381  -48.504 -29.278 1.189  1.644  -1.134 "H4'"  UFT 29 
UFT "H1'"  "H1'"  H 0 1 N N N N N N 1.053  -51.636 -28.370 -1.402 1.185  -1.460 "H1'"  UFT 30 
UFT "H3'"  "H3'"  H 0 1 N N N N N N 2.874  -50.449 -31.600 0.575  2.029  1.802  "H3'"  UFT 31 
UFT "HO3'" "HO3'" H 0 0 N Y N N N N 4.558  -49.343 -31.414 0.157  4.223  0.894  "HO3'" UFT 32 
UFT HN3    HN3    H 0 1 N N N N N N -0.097 -55.332 -30.747 -5.155 -1.193 -1.331 HN3    UFT 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UFT OP3   P      SING N N 1  
UFT OP1   P      DOUB N N 2  
UFT P     OP2    SING N N 3  
UFT P     "O5'"  SING N N 4  
UFT OP3   HOP3   SING N N 5  
UFT OP2   HOP2   SING N N 6  
UFT "O5'" "C5'"  SING N N 7  
UFT C6    N1     SING N N 8  
UFT N1    C2     SING N N 9  
UFT N1    "C1'"  SING N N 10 
UFT C5    C6     DOUB N N 11 
UFT C6    H6     SING N N 12 
UFT N3    C2     SING N N 13 
UFT C2    O2     DOUB N N 14 
UFT C4    N3     SING N N 15 
UFT O4    C4     DOUB N N 16 
UFT C5    C4     SING N N 17 
UFT C5    H5     SING N N 18 
UFT "C2'" "F2'"  SING N N 19 
UFT "C3'" "C2'"  SING N N 20 
UFT "C2'" "C1'"  SING N N 21 
UFT "C2'" "H2'"  SING N N 22 
UFT "C5'" "C4'"  SING N N 23 
UFT "C5'" "H5'"  SING N N 24 
UFT "C5'" "H5'A" SING N N 25 
UFT "C3'" "C4'"  SING N N 26 
UFT "C4'" "O4'"  SING N N 27 
UFT "C4'" "H4'"  SING N N 28 
UFT "O4'" "C1'"  SING N N 29 
UFT "C1'" "H1'"  SING N N 30 
UFT "C3'" "O3'"  SING N N 31 
UFT "C3'" "H3'"  SING N N 32 
UFT "O3'" "HO3'" SING N N 33 
UFT N3    HN3    SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UFT SMILES           ACDLabs              10.04 "O=P(O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(F)C2O"                                                                                                        
UFT SMILES_CANONICAL CACTVS               3.341 "O[C@H]1[C@@H](F)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O"                                                                                     
UFT SMILES           CACTVS               3.341 "O[CH]1[CH](F)[CH](O[CH]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O"                                                                                            
UFT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)F"                                                                                    
UFT SMILES           "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)F"                                                                                                      
UFT InChI            InChI                1.03  "InChI=1S/C9H12FN2O8P/c10-6-7(14)4(3-19-21(16,17)18)20-8(6)12-2-1-5(13)11-9(12)15/h1-2,4,6-8,14H,3H2,(H,11,13,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1" 
UFT InChIKey         InChI                1.03  RTGGYPQTXNSBPD-XVFCMESISA-N                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UFT "SYSTEMATIC NAME" ACDLabs              10.04 
;2'-deoxy-2'-fluorouridine 5'-(dihydrogen phosphate)
;
UFT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UFT "Create component"  2008-07-07 RCSB 
UFT "Modify descriptor" 2011-06-04 RCSB 
UFT "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            UFT 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C6 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
