data_U7T
#

_chem_comp.id                                   U7T
_chem_comp.name                                 "[(2~{R},3~{S},5~{R})-3-oxidanyl-5-(2-oxidanylidene-1~{H}-imidazo[2,1-f]purin-3-yl)oxolan-2-yl]methyl dihydrogen phosphite"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H14 N5 O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "7,8-dihydro-8-oxo-1,N6-ethenoadenine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-01-28
_chem_comp.pdbx_modified_date                   2022-02-25
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       355.243
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    U7T
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7NBP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
U7T  P       P1   P  0  1  N  N  N  20.379  25.036  27.386   5.208   1.484   0.011  P       U7T   1  
U7T  OP1     O1   O  0  1  N  N  N  20.835  26.399  27.738   5.010   2.726   1.016  OP1     U7T   2  
U7T  OP2     O2   O  0  1  N  N  N  21.028  23.851  27.986   6.460   0.716   0.671  OP2     U7T   3  
U7T  "O5'"   O3   O  0  1  N  N  N  18.796  24.949  27.678   3.978   0.527   0.415  "O5'"   U7T   4  
U7T  C4      C1   C  0  1  Y  N  N  18.437  18.928  24.572  -6.210   0.580   1.140  C4      U7T   5  
U7T  N3      N1   N  0  1  Y  N  N  18.043  19.865  25.525  -4.911   0.171   0.988  N3      U7T   6  
U7T  C2      C2   C  0  1  Y  N  N  18.266  20.708  26.560  -4.102  -0.654   1.707  C2      U7T   7  
U7T  N1      N2   N  0  1  N  N  N  15.192  22.581  26.626  -1.087  -0.412  -0.342  N1      U7T   8  
U7T  C6      C3   C  0  1  Y  N  N  15.844  20.885  25.458  -3.099   0.520  -0.531  C6      U7T   9  
U7T  C5      C4   C  0  1  Y  N  N  17.470  18.528  23.708  -6.491   1.406   0.110  C5      U7T  10  
U7T  "C2'"   C5   C  0  1  N  N  N  15.699  23.792  28.803   0.472  -2.255  -0.909  "C2'"   U7T  11  
U7T  "C5'"   C6   C  0  1  N  N  N  17.949  26.041  27.370   3.538  -0.560  -0.401  "C5'"   U7T  12  
U7T  "C4'"   C7   C  0  1  N  N  R  16.471  25.733  27.635   2.355  -1.258   0.274  "C4'"   U7T  13  
U7T  "O4'"   O4   O  0  1  N  N  N  15.978  24.790  26.699   1.218  -0.379   0.297  "O4'"   U7T  14  
U7T  "C1'"   C8   C  0  1  N  N  R  15.154  23.860  27.376   0.043  -1.205   0.148  "C1'"   U7T  15  
U7T  "C3'"   C9   C  0  1  N  N  S  16.150  25.232  29.050   1.952  -2.507  -0.534  "C3'"   U7T  16  
U7T  "O3'"   O5   O  0  1  N  N  N  15.116  26.063  29.559   2.073  -3.682   0.269  "O3'"   U7T  17  
U7T  C1      C10  C  0  1  Y  N  N  16.275  21.721  26.454  -2.338  -0.333   0.251  C1      U7T  18  
U7T  N2      N3   N  0  1  Y  N  N  17.484  21.659  27.074  -2.872  -0.890   1.347  N2      U7T  19  
U7T  C3      C11  C  0  1  Y  N  N  16.734  19.941  25.002  -4.432   0.780  -0.149  C3      U7T  20  
U7T  N4      N4   N  0  1  Y  N  N  16.265  19.155  23.950  -5.404   1.513  -0.662  N4      U7T  21  
U7T  O4      O6   O  0  1  N  N  N  13.043  22.819  25.689  -0.142   0.513  -2.197  O4      U7T  22  
U7T  N5      N5   N  0  1  N  N  N  14.554  21.182  25.071  -2.295   0.939  -1.584  N5      U7T  23  
U7T  C7      C12  C  0  1  N  N  N  14.132  22.261  25.790  -1.087   0.361  -1.445  C7      U7T  24  
U7T  H1      H1   H  0  1  N  N  N  21.768  26.474  27.574   5.675   3.421   0.918  H1      U7T  25  
U7T  H3      H2   H  0  1  N  N  N  21.963  23.885  27.823   7.310   1.155   0.529  H3      U7T  26  
U7T  H5      H3   H  0  1  N  N  N  19.446  18.545  24.524  -6.885   0.291   1.932  H5      U7T  27  
U7T  H4      H4   H  0  1  N  N  N  19.224  20.593  27.044  -4.489  -1.125   2.598  H4      U7T  28  
U7T  H6      H5   H  0  1  N  N  N  17.626  17.803  22.922  -7.437   1.896  -0.065  H6      U7T  29  
U7T  "H2'"   H6   H  0  1  N  N  N  14.915  23.493  29.515  -0.115  -3.169  -0.809  "H2'"   U7T  30  
U7T  "H2''"  H7   H  0  0  N  N  N  16.545  23.092  28.873   0.389  -1.850  -1.917  "H2''"  U7T  31  
U7T  "H5''"  H8   H  0  0  N  N  N  18.071  26.293  26.306   3.229  -0.182  -1.375  "H5''"  U7T  32  
U7T  "H5'"   H9   H  0  1  N  N  N  18.246  26.902  27.987   4.354  -1.271  -0.529  "H5'"   U7T  33  
U7T  "H4'"   H10  H  0  1  N  N  N  15.920  26.675  27.498   2.625  -1.544   1.290  "H4'"   U7T  34  
U7T  "H1'"   H11  H  0  1  N  N  N  14.118  24.227  27.413  -0.210  -1.690   1.091  "H1'"   U7T  35  
U7T  "H3'"   H12  H  0  1  N  N  N  17.051  25.253  29.681   2.564  -2.593  -1.432  "H3'"   U7T  36  
U7T  H7      H13  H  0  1  N  N  N  14.888  25.783  30.438   1.778  -4.491  -0.170  H7      U7T  37  
U7T  H2      H14  H  0  1  N  N  N  14.020  20.691  24.382  -2.558   1.544  -2.296  H2      U7T  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U7T  C5     N4      SING  Y  N   1  
U7T  C5     C4      DOUB  Y  N   2  
U7T  N4     C3      DOUB  Y  N   3  
U7T  C4     N3      SING  Y  N   4  
U7T  C3     C6      SING  Y  N   5  
U7T  C3     N3      SING  Y  N   6  
U7T  N5     C6      SING  N  N   7  
U7T  N5     C7      SING  N  N   8  
U7T  C6     C1      DOUB  Y  N   9  
U7T  N3     C2      SING  Y  N  10  
U7T  O4     C7      DOUB  N  N  11  
U7T  C7     N1      SING  N  N  12  
U7T  C1     N1      SING  N  N  13  
U7T  C1     N2      SING  Y  N  14  
U7T  C2     N2      DOUB  Y  N  15  
U7T  N1     "C1'"   SING  N  N  16  
U7T  "O4'"  "C1'"   SING  N  N  17  
U7T  "O4'"  "C4'"   SING  N  N  18  
U7T  "C5'"  "C4'"   SING  N  N  19  
U7T  "C5'"  "O5'"   SING  N  N  20  
U7T  "C1'"  "C2'"   SING  N  N  21  
U7T  P      "O5'"   SING  N  N  22  
U7T  P      OP1     SING  N  N  23  
U7T  P      OP2     SING  N  N  24  
U7T  "C4'"  "C3'"   SING  N  N  25  
U7T  "C2'"  "C3'"   SING  N  N  26  
U7T  "C3'"  "O3'"   SING  N  N  27  
U7T  OP1    H1      SING  N  N  28  
U7T  OP2    H3      SING  N  N  29  
U7T  C4     H5      SING  N  N  30  
U7T  C2     H4      SING  N  N  31  
U7T  C5     H6      SING  N  N  32  
U7T  "C2'"  "H2'"   SING  N  N  33  
U7T  "C2'"  "H2''"  SING  N  N  34  
U7T  "C5'"  "H5''"  SING  N  N  35  
U7T  "C5'"  "H5'"   SING  N  N  36  
U7T  "C4'"  "H4'"   SING  N  N  37  
U7T  "C1'"  "H1'"   SING  N  N  38  
U7T  "C3'"  "H3'"   SING  N  N  39  
U7T  "O3'"  H7      SING  N  N  40  
U7T  N5     H2      SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U7T  InChI             InChI                 1.03   "InChI=1S/C12H14N5O6P/c18-6-3-8(23-7(6)4-22-24(20)21)17-11-9(15-12(17)19)10-13-1-2-16(10)5-14-11/h1-2,5-8,18,20-21H,3-4H2,(H,15,19)/t6-,7+,8+/m0/s1"  
U7T  InChIKey          InChI                 1.03   RDYCXWJDONFONO-XLPZGREQSA-N  
U7T  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1C[C@@H](O[C@@H]1COP(O)O)N2C(=O)Nc3c4nccn4cnc23"  
U7T  SMILES            CACTVS                3.385  "O[CH]1C[CH](O[CH]1COP(O)O)N2C(=O)Nc3c4nccn4cnc23"  
U7T  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cn2cnc3c(c2n1)NC(=O)N3[C@H]4C[C@@H]([C@H](O4)COP(O)O)O"  
U7T  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cn2cnc3c(c2n1)NC(=O)N3C4CC(C(O4)COP(O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          U7T
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},5~{R})-3-oxidanyl-5-(2-oxidanylidene-1~{H}-imidazo[2,1-f]purin-3-yl)oxolan-2-yl]methyl dihydrogen phosphite"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     U7T
_pdbx_chem_comp_synonyms.name        "7,8-dihydro-8-oxo-1,N6-ethenoadenine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U7T  "Create component"  2021-01-28  PDBE  
U7T  "Initial release"   2022-03-02  RCSB  
##
