data_T8T
# 
_chem_comp.id                                    T8T 
_chem_comp.name                                  "2'-deoxyguanosine-5'-O-(1-thiotriphosphate)" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H16 N5 O12 P3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-07-25 
_chem_comp.pdbx_modified_date                    2013-10-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        523.247 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     T8T 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4bzc 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
T8T N1     N1     N 0 1 N N N 46.202 24.678 33.008 -7.829 2.107  0.068  N1     T8T 1  
T8T C2     C2     C 0 1 N N N 44.992 25.101 33.333 -7.388 1.582  1.191  C2     T8T 2  
T8T N2     N2     N 0 1 N N N 43.924 24.583 32.715 -8.133 1.738  2.329  N2     T8T 3  
T8T N3     N3     N 0 1 N N N 44.734 26.028 34.257 -6.221 0.889  1.264  N3     T8T 4  
T8T C4     C4     C 0 1 Y N N 45.730 26.561 34.935 -5.446 0.710  0.148  C4     T8T 5  
T8T C5     C5     C 0 1 Y N N 47.066 26.183 34.634 -5.873 1.248  -1.060 C5     T8T 6  
T8T C6     C6     C 0 1 N N N 47.227 25.193 33.611 -7.140 1.986  -1.077 C6     T8T 7  
T8T O6     O6     O 0 1 N N N 48.345 24.826 33.312 -7.561 2.478  -2.113 O6     T8T 8  
T8T N7     N7     N 0 1 Y N N 47.836 26.885 35.428 -4.945 0.936  -1.993 N7     T8T 9  
T8T C8     C8     C 0 1 Y N N 47.027 27.677 36.182 -3.991 0.249  -1.434 C8     T8T 10 
T8T N9     N9     N 0 1 Y N N 45.760 27.451 35.861 -4.263 0.086  -0.107 N9     T8T 11 
T8T PA     PA     P 0 1 N N R 47.526 31.498 37.142 2.215  -1.608 -0.419 PA     T8T 12 
T8T PB     PB     P 0 1 N N N 48.414 33.461 38.888 4.793  -0.210 0.005  PB     T8T 13 
T8T PG     PG     P 0 1 N N N 50.147 35.541 38.172 6.318  2.272  0.554  PG     T8T 14 
T8T "C1'"  "C1'"  C 0 1 N N R 44.501 28.020 36.344 -3.434 -0.628 0.866  "C1'"  T8T 15 
T8T S1A    S1A    S 0 1 N N N 47.650 32.065 35.325 2.019  -1.172 -2.485 S1A    T8T 16 
T8T O1B    O1B    O 0 1 N N N 49.345 32.380 39.366 5.044  -0.086 -1.448 O1B    T8T 17 
T8T O1G    O1G    O 0 1 N N N 51.480 34.810 38.397 5.903  3.634  1.307  O1G    T8T 18 
T8T "C2'"  "C2'"  C 0 1 N N N 44.482 28.264 37.842 -3.928 -2.081 1.010  "C2'"  T8T 19 
T8T O2A    O2A    O 0 1 N N N 48.569 30.572 37.558 2.726  -2.987 -0.253 O2A    T8T 20 
T8T O2B    O2B    O 0 1 N N N 47.775 34.414 39.836 5.719  -1.379 0.611  O2B    T8T 21 
T8T O2G    O2G    O 0 1 N N N 49.426 36.095 39.370 7.681  1.701  1.191  O2G    T8T 22 
T8T "C3'"  "C3'"  C 0 1 N N S 43.770 29.565 37.948 -2.698 -2.940 0.632  "C3'"  T8T 23 
T8T "O3'"  "O3'"  O 0 1 N N N 42.399 29.314 38.152 -2.575 -4.066 1.504  "O3'"  T8T 24 
T8T O3A    O3A    O 0 1 N N N 47.301 32.866 37.944 3.244  -0.569 0.254  O3A    T8T 25 
T8T O3B    O3B    O 0 1 N N N 49.221 34.284 37.798 5.145  1.183  0.731  O3B    T8T 26 
T8T O3G    O3G    O 0 1 N N N 50.076 36.395 36.930 6.523  2.547  -0.885 O3G    T8T 27 
T8T "C4'"  "C4'"  C 0 1 N N R 43.930 30.214 36.595 -1.529 -1.945 0.846  "C4'"  T8T 28 
T8T "O4'"  "O4'"  O 0 1 N N N 44.313 29.228 35.646 -2.074 -0.684 0.402  "O4'"  T8T 29 
T8T "C5'"  "C5'"  C 0 1 N N N 44.968 31.310 36.691 -0.322 -2.341 -0.007 "C5'"  T8T 30 
T8T "O5'"  "O5'"  O 0 1 N N N 46.152 30.698 37.237 0.778  -1.479 0.295  "O5'"  T8T 31 
T8T HN2    HN2    H 0 1 N N N 44.044 23.881 32.013 -8.969 2.229  2.297  HN2    T8T 32 
T8T HN2A   HN2A   H 0 0 N N N 43.006 24.898 32.955 -7.825 1.358  3.166  HN2A   T8T 33 
T8T HN3    HN3    H 0 1 N N N 43.793 26.316 34.433 -5.934 0.518  2.114  HN3    T8T 34 
T8T H8     H8     H 0 1 N N N 47.364 28.382 36.928 -3.118 -0.134 -1.942 H8     T8T 35 
T8T "H1'"  "H1'"  H 0 1 N N N 43.683 27.325 36.102 -3.477 -0.124 1.832  "H1'"  T8T 36 
T8T HS1A   HS1A   H 0 0 N N N 48.707 31.429 34.915 1.554  0.090  -2.485 HS1A   T8T 37 
T8T HO1G   HO1G   H 0 0 N N N 52.079 35.018 37.689 6.565  4.336  1.242  HO1G   T8T 38 
T8T "H2'"  "H2'"  H 0 1 N N N 43.935 27.468 38.367 -4.232 -2.280 2.038  "H2'"  T8T 39 
T8T "H2'A" "H2'A" H 0 0 N N N 45.503 28.336 38.246 -4.753 -2.273 0.324  "H2'A" T8T 40 
T8T HO2B   HO2B   H 0 0 N N N 48.053 34.214 40.722 5.607  -1.517 1.562  HO2B   T8T 41 
T8T HO2G   HO2G   H 0 0 N N N 49.026 36.926 39.143 7.620  1.498  2.135  HO2G   T8T 42 
T8T "H3'"  "H3'"  H 0 1 N N N 44.205 30.194 38.739 -2.751 -3.260 -0.408 "H3'"  T8T 43 
T8T "HO3'" "HO3'" H 0 0 N N N 41.933 30.139 38.221 -3.328 -4.672 1.472  "HO3'" T8T 44 
T8T "H4'"  "H4'"  H 0 1 N N N 42.969 30.663 36.303 -1.253 -1.897 1.900  "H4'"  T8T 45 
T8T "H5'"  "H5'"  H 0 1 N N N 45.178 31.724 35.694 -0.045 -3.372 0.211  "H5'"  T8T 46 
T8T "H5'A" "H5'A" H 0 0 N N N 44.614 32.113 37.354 -0.577 -2.248 -1.062 "H5'A" T8T 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
T8T N1    C2     DOUB N N 1  
T8T N1    C6     SING N N 2  
T8T N2    C2     SING N N 3  
T8T C2    N3     SING N N 4  
T8T N2    HN2    SING N N 5  
T8T N2    HN2A   SING N N 6  
T8T N3    C4     SING N N 7  
T8T N3    HN3    SING N N 8  
T8T C5    C4     DOUB Y N 9  
T8T C4    N9     SING Y N 10 
T8T C6    C5     SING N N 11 
T8T C5    N7     SING Y N 12 
T8T O6    C6     DOUB N N 13 
T8T N7    C8     DOUB Y N 14 
T8T N9    C8     SING Y N 15 
T8T C8    H8     SING N N 16 
T8T N9    "C1'"  SING N N 17 
T8T S1A   PA     SING N N 18 
T8T PA    "O5'"  SING N N 19 
T8T PA    O2A    DOUB N N 20 
T8T PA    O3A    SING N N 21 
T8T O3B   PB     SING N N 22 
T8T O3A   PB     SING N N 23 
T8T PB    O1B    DOUB N N 24 
T8T PB    O2B    SING N N 25 
T8T O3G   PG     DOUB N N 26 
T8T O3B   PG     SING N N 27 
T8T PG    O1G    SING N N 28 
T8T PG    O2G    SING N N 29 
T8T "O4'" "C1'"  SING N N 30 
T8T "C1'" "C2'"  SING N N 31 
T8T "C1'" "H1'"  SING N N 32 
T8T S1A   HS1A   SING N N 33 
T8T O1G   HO1G   SING N N 34 
T8T "C2'" "C3'"  SING N N 35 
T8T "C2'" "H2'"  SING N N 36 
T8T "C2'" "H2'A" SING N N 37 
T8T O2B   HO2B   SING N N 38 
T8T O2G   HO2G   SING N N 39 
T8T "C4'" "C3'"  SING N N 40 
T8T "C3'" "O3'"  SING N N 41 
T8T "C3'" "H3'"  SING N N 42 
T8T "O3'" "HO3'" SING N N 43 
T8T "O4'" "C4'"  SING N N 44 
T8T "C4'" "C5'"  SING N N 45 
T8T "C4'" "H4'"  SING N N 46 
T8T "C5'" "O5'"  SING N N 47 
T8T "C5'" "H5'"  SING N N 48 
T8T "C5'" "H5'A" SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
T8T SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(S)OCC3OC(n1cnc2c1NC(=NC2=O)N)CC3O"                                                                                                                                             
T8T InChI            InChI                1.03  "InChI=1S/C10H16N5O12P3S/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(25-6)2-24-30(23,31)27-29(21,22)26-28(18,19)20/h3-6,16H,1-2H2,(H,21,22)(H,23,31)(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+,30+/m0/s1" 
T8T InChIKey         InChI                1.03  IOCRYHATDKHWPM-KUFCIHQDSA-N                                                                                                                                                                              
T8T SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)c2ncn([C@H]3C[C@H](O)[C@@H](CO[P@](S)(=O)O[P](O)(=O)O[P](O)(O)=O)O3)c2N1"                                                                                                                     
T8T SMILES           CACTVS               3.385 "NC1=NC(=O)c2ncn([CH]3C[CH](O)[CH](CO[P](S)(=O)O[P](O)(=O)O[P](O)(O)=O)O3)c2N1"                                                                                                                          
T8T SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@](=O)(OP(=O)(O)OP(=O)(O)O)S)O)NC(=NC2=O)N"                                                                                                                         
T8T SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1C3CC(C(O3)COP(=O)(OP(=O)(O)OP(=O)(O)O)S)O)NC(=NC2=O)N"                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
T8T "SYSTEMATIC NAME" ACDLabs              12.01 "2'-deoxy-5'-O-[(R)-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}(sulfanyl)phosphoryl]guanosine"                                              
T8T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,5R)-5-(2-azanyl-6-oxidanylidene-3H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-sulfanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
T8T "Create component" 2013-07-25 EBI  
T8T "Initial release"  2013-10-23 RCSB 
# 
