data_S4T
#

_chem_comp.id                                   S4T
_chem_comp.name                                 "N-(6-(4-(3-(4-((5,6-dihydroimidazo[1,2-a]pyrazin-7(8H)-yl)methyl)-3-(trifluoromethyl)phenyl)ureido)phenoxy)pyrimidin-4-yl)cyclopropanecarboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C29 H27 F3 N8 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "~{N}-[6-[4-[[4-(6,8-dihydro-5~{H}-imidazo[1,2-a]pyrazin-7-ylmethyl)-3-(trifluoromethyl)phenyl]carbamoylamino]phenoxy]pyrimidin-4-yl]cyclopropanecarboxamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-11-06
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       592.572
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S4T
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7AW1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S4T  C1   C1   C  0  1  Y  N  N  21.000  34.502  -15.904    4.159  -2.101  -1.643  C1   S4T   1  
S4T  C2   C2   C  0  1  Y  N  N  20.680  33.151  -15.974    4.464  -2.200  -0.294  C2   S4T   2  
S4T  C3   C3   C  0  1  Y  N  N  20.500  32.415  -14.807    3.449  -2.356   0.639  C3   S4T   3  
S4T  N6   N1   N  0  1  Y  N  N  22.214  30.978  -16.863    5.796   0.107  -0.484  N6   S4T   4  
S4T  C7   C4   C  0  1  Y  N  N  20.800  35.565   -8.683   -2.780  -1.370  -0.384  C7   S4T   5  
S4T  C8   C5   C  0  1  Y  N  N  20.296  36.751   -8.168   -2.542  -0.135   0.204  C8   S4T   6  
S4T  C9   C6   C  0  1  Y  N  N  19.869  36.808   -6.856   -3.538   0.483   0.935  C9   S4T   7  
S4T  C10  C7   C  0  1  Y  N  N  19.931  35.692   -6.017   -4.771  -0.126   1.081  C10  S4T   8  
S4T  C11  C8   C  0  1  Y  N  N  20.439  34.485   -6.532   -5.010  -1.357   0.495  C11  S4T   9  
S4T  C12  C9   C  0  1  Y  N  N  20.868  34.438   -7.861   -4.019  -1.980  -0.236  C12  S4T  10  
S4T  C13  C10  C  0  1  N  N  N  20.577  33.180   -5.778   -6.355  -2.018   0.657  C13  S4T  11  
S4T  C14  C11  C  0  1  N  N  N  19.454  35.781   -4.581   -5.855   0.551   1.879  C14  S4T  12  
S4T  C15  C12  C  0  1  N  N  N  20.493  37.991   -4.239   -7.976   1.707   1.701  C15  S4T  13  
S4T  C16  C13  C  0  1  N  N  N  20.473  39.216   -3.333   -9.124   1.998   0.727  C16  S4T  14  
S4T  C19  C14  C  0  1  Y  N  N  17.982  38.982   -3.404   -7.266   2.883  -0.676  C19  S4T  15  
S4T  C20  C15  C  0  1  N  N  N  18.072  37.764   -4.313   -6.188   2.201   0.134  C20  S4T  16  
S4T  C21  C16  C  0  1  Y  N  N  21.200  31.422  -17.589    6.428  -0.976  -0.042  C21  S4T  17  
S4T  C22  C17  C  0  1  Y  N  N  20.721  30.789  -18.732    7.783  -0.893   0.257  C22  S4T  18  
S4T  C24  C18  C  0  1  Y  N  N  22.762  29.842  -17.309    6.438   1.248  -0.640  C24  S4T  19  
S4T  C27  C19  C  0  1  N  N  N  18.733  27.286  -22.553   12.458   3.207   0.396  C27  S4T  20  
S4T  O2   O1   O  0  1  N  N  N  19.298  29.931  -21.123    9.694   2.661   0.072  O2   S4T  21  
S4T  C25  C20  C  0  1  N  N  N  20.093  28.992  -21.131   10.364   1.676   0.293  C25  S4T  22  
S4T  C26  C21  C  0  1  N  N  N  20.062  27.914  -22.213   11.853   1.805   0.488  C26  S4T  23  
S4T  C28  C22  C  0  1  N  N  N  19.356  28.231  -23.510   12.340   2.512   1.754  C28  S4T  24  
S4T  N7   N2   N  0  1  N  N  N  21.066  28.811  -20.201    9.778   0.464   0.364  N7   S4T  25  
S4T  C23  C23  C  0  1  Y  N  N  21.388  29.610  -19.089    8.423   0.329   0.079  C23  S4T  26  
S4T  N5   N3   N  0  1  Y  N  N  22.419  29.120  -18.383    7.721   1.367  -0.368  N5   S4T  27  
S4T  O1   O2   O  0  1  N  N  N  20.543  32.573  -17.246    5.760  -2.145   0.116  O1   S4T  28  
S4T  C4   C24  C  0  1  Y  N  N  20.647  33.029  -13.573    2.133  -2.412   0.224  C4   S4T  29  
S4T  C5   C25  C  0  1  Y  N  N  20.970  34.384  -13.492    1.826  -2.313  -1.127  C5   S4T  30  
S4T  C    C26  C  0  1  Y  N  N  21.144  35.114  -14.668    2.843  -2.157  -2.059  C    S4T  31  
S4T  N    N4   N  0  1  N  N  N  21.138  35.079  -12.263    0.491  -2.370  -1.548  N    S4T  32  
S4T  C6   C27  C  0  1  N  N  N  21.025  34.600  -10.977   -0.483  -1.852  -0.774  C6   S4T  33  
S4T  O    O3   O  0  1  N  N  N  20.782  33.430  -10.692   -0.196  -1.255   0.245  O    S4T  34  
S4T  N1   N5   N  0  1  N  N  N  21.216  35.581  -10.038   -1.775  -1.996  -1.130  N1   S4T  35  
S4T  F2   F1   F  0  1  N  N  N  19.401  32.687   -5.371   -6.375  -3.216  -0.065  F2   S4T  36  
S4T  F1   F2   F  0  1  N  N  N  21.130  32.203   -6.515   -6.583  -2.286   2.011  F1   S4T  37  
S4T  F    F3   F  0  1  N  N  N  21.346  33.288   -4.686   -7.354  -1.166   0.176  F    S4T  38  
S4T  N2   N6   N  0  1  N  N  N  19.336  37.116   -3.962   -6.826   1.164   0.963  N2   S4T  39  
S4T  N4   N7   N  0  1  Y  N  N  16.898  39.567   -2.925   -7.125   3.641  -1.721  N4   S4T  40  
S4T  C18  C28  C  0  1  Y  N  N  17.348  40.618   -2.161   -8.336   4.042  -2.142  C18  S4T  41  
S4T  C17  C29  C  0  1  Y  N  N  18.697  40.670   -2.178   -9.264   3.507  -1.321  C17  S4T  42  
S4T  N3   N8   N  0  1  Y  N  N  19.109  39.626   -2.972   -8.588   2.776  -0.393  N3   S4T  43  
S4T  H1   H1   H  0  1  N  N  N  21.136  35.074  -16.810    4.949  -1.975  -2.368  H1   S4T  44  
S4T  H2   H2   H  0  1  N  N  N  20.246  31.367  -14.863    3.687  -2.433   1.689  H2   S4T  45  
S4T  H3   H3   H  0  1  N  N  N  20.238  37.630   -8.793   -1.580   0.342   0.091  H3   S4T  46  
S4T  H4   H4   H  0  1  N  N  N  19.478  37.737   -6.469   -3.354   1.444   1.393  H4   S4T  47  
S4T  H5   H5   H  0  1  N  N  N  21.259  33.514   -8.260   -4.207  -2.940  -0.693  H5   S4T  48  
S4T  H6   H6   H  0  1  N  N  N  18.459  35.314   -4.539   -6.359  -0.186   2.504  H6   S4T  49  
S4T  H7   H7   H  0  1  N  N  N  20.158  35.199   -3.968   -5.413   1.322   2.510  H7   S4T  50  
S4T  H8   H8   H  0  1  N  N  N  21.421  37.428   -4.064   -7.682   2.630   2.202  H8   S4T  51  
S4T  H9   H9   H  0  1  N  N  N  20.455  38.318   -5.289   -8.306   0.981   2.444  H9   S4T  52  
S4T  H10  H10  H  0  1  N  N  N  21.027  38.983   -2.412   -9.539   1.061   0.357  H10  S4T  53  
S4T  H11  H11  H  0  1  N  N  N  20.965  40.049   -3.856   -9.900   2.571   1.234  H11  S4T  54  
S4T  H12  H12  H  0  1  N  N  N  18.076  38.071   -5.369   -5.461   1.741  -0.535  H12  S4T  55  
S4T  H13  H13  H  0  1  N  N  N  17.227  37.084   -4.132   -5.692   2.930   0.774  H13  S4T  56  
S4T  H14  H14  H  0  1  N  N  N  19.892  31.180  -19.304    8.325  -1.755   0.618  H14  S4T  57  
S4T  H15  H15  H  0  1  N  N  N  23.587  29.458  -16.728    5.896   2.109  -1.001  H15  S4T  58  
S4T  H16  H16  H  0  1  N  N  N  17.829  27.582  -22.000   13.454   3.298  -0.038  H16  S4T  59  
S4T  H17  H17  H  0  1  N  N  N  18.679  26.215  -22.797   11.780   4.036   0.194  H17  S4T  60  
S4T  H18  H18  H  0  1  N  N  N  20.947  27.264  -22.279   12.450   0.973   0.115  H18  S4T  61  
S4T  H19  H19  H  0  1  N  N  N  19.764  27.859  -24.462   13.259   2.146   2.214  H19  S4T  62  
S4T  H20  H20  H  0  1  N  N  N  18.914  29.226  -23.665   11.585   2.884   2.446  H20  S4T  63  
S4T  H21  H21  H  0  1  N  N  N  21.632  27.996  -20.324   10.301  -0.314   0.613  H21  S4T  64  
S4T  H22  H22  H  0  1  N  N  N  20.511  32.455  -12.668    1.342  -2.533   0.950  H22  S4T  65  
S4T  H23  H23  H  0  1  N  N  N  21.393  36.164  -14.615    2.605  -2.075  -3.110  H23  S4T  66  
S4T  H24  H24  H  0  1  N  N  N  21.370  36.048  -12.344    0.268  -2.782  -2.398  H24  S4T  67  
S4T  H25  H25  H  0  1  N  N  N  21.703  36.399  -10.343   -2.008  -2.534  -1.903  H25  S4T  68  
S4T  H27  H27  H  0  1  N  N  N  16.712  41.305   -1.623   -8.533   4.680  -2.991  H27  S4T  69  
S4T  H28  H28  H  0  1  N  N  N  19.325  41.387   -1.670  -10.334   3.635  -1.386  H28  S4T  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S4T  C28  C27  SING  N  N   1  
S4T  C28  C26  SING  N  N   2  
S4T  C27  C26  SING  N  N   3  
S4T  C26  C25  SING  N  N   4  
S4T  C25  O2   DOUB  N  N   5  
S4T  C25  N7   SING  N  N   6  
S4T  N7   C23  SING  N  N   7  
S4T  C23  C22  DOUB  Y  N   8  
S4T  C23  N5   SING  Y  N   9  
S4T  C22  C21  SING  Y  N  10  
S4T  N5   C24  DOUB  Y  N  11  
S4T  C21  O1   SING  N  N  12  
S4T  C21  N6   DOUB  Y  N  13  
S4T  C24  N6   SING  Y  N  14  
S4T  O1   C2   SING  N  N  15  
S4T  C2   C1   DOUB  Y  N  16  
S4T  C2   C3   SING  Y  N  17  
S4T  C1   C    SING  Y  N  18  
S4T  C3   C4   DOUB  Y  N  19  
S4T  C    C5   DOUB  Y  N  20  
S4T  C4   C5   SING  Y  N  21  
S4T  C5   N    SING  N  N  22  
S4T  N    C6   SING  N  N  23  
S4T  C6   O    DOUB  N  N  24  
S4T  C6   N1   SING  N  N  25  
S4T  N1   C7   SING  N  N  26  
S4T  C7   C8   DOUB  Y  N  27  
S4T  C7   C12  SING  Y  N  28  
S4T  C8   C9   SING  Y  N  29  
S4T  C12  C11  DOUB  Y  N  30  
S4T  C9   C10  DOUB  Y  N  31  
S4T  C11  C10  SING  Y  N  32  
S4T  C11  C13  SING  N  N  33  
S4T  F1   C13  SING  N  N  34  
S4T  C10  C14  SING  N  N  35  
S4T  C13  F2   SING  N  N  36  
S4T  C13  F    SING  N  N  37  
S4T  C14  N2   SING  N  N  38  
S4T  C20  N2   SING  N  N  39  
S4T  C20  C19  SING  N  N  40  
S4T  C15  N2   SING  N  N  41  
S4T  C15  C16  SING  N  N  42  
S4T  C19  N3   SING  Y  N  43  
S4T  C19  N4   DOUB  Y  N  44  
S4T  C16  N3   SING  N  N  45  
S4T  N3   C17  SING  Y  N  46  
S4T  N4   C18  SING  Y  N  47  
S4T  C17  C18  DOUB  Y  N  48  
S4T  C1   H1   SING  N  N  49  
S4T  C3   H2   SING  N  N  50  
S4T  C8   H3   SING  N  N  51  
S4T  C9   H4   SING  N  N  52  
S4T  C12  H5   SING  N  N  53  
S4T  C14  H6   SING  N  N  54  
S4T  C14  H7   SING  N  N  55  
S4T  C15  H8   SING  N  N  56  
S4T  C15  H9   SING  N  N  57  
S4T  C16  H10  SING  N  N  58  
S4T  C16  H11  SING  N  N  59  
S4T  C20  H12  SING  N  N  60  
S4T  C20  H13  SING  N  N  61  
S4T  C22  H14  SING  N  N  62  
S4T  C24  H15  SING  N  N  63  
S4T  C27  H16  SING  N  N  64  
S4T  C27  H17  SING  N  N  65  
S4T  C26  H18  SING  N  N  66  
S4T  C28  H19  SING  N  N  67  
S4T  C28  H20  SING  N  N  68  
S4T  N7   H21  SING  N  N  69  
S4T  C4   H22  SING  N  N  70  
S4T  C    H23  SING  N  N  71  
S4T  N    H24  SING  N  N  72  
S4T  N1   H25  SING  N  N  73  
S4T  C18  H27  SING  N  N  74  
S4T  C17  H28  SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S4T  InChI             InChI                 1.03   "InChI=1S/C29H27F3N8O3/c30-29(31,32)23-13-21(4-3-19(23)15-39-11-12-40-10-9-33-25(40)16-39)37-28(42)36-20-5-7-22(8-6-20)43-26-14-24(34-17-35-26)38-27(41)18-1-2-18/h3-10,13-14,17-18H,1-2,11-12,15-16H2,(H2,36,37,42)(H,34,35,38,41)"  
S4T  InChIKey          InChI                 1.03   JVAUXOQNQAAUBJ-UHFFFAOYSA-N  
S4T  SMILES_CANONICAL  CACTVS                3.385  "FC(F)(F)c1cc(NC(=O)Nc2ccc(Oc3cc(NC(=O)C4CC4)ncn3)cc2)ccc1CN5CCn6ccnc6C5"  
S4T  SMILES            CACTVS                3.385  "FC(F)(F)c1cc(NC(=O)Nc2ccc(Oc3cc(NC(=O)C4CC4)ncn3)cc2)ccc1CN5CCn6ccnc6C5"  
S4T  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1NC(=O)Nc2ccc(c(c2)C(F)(F)F)CN3CCn4ccnc4C3)Oc5cc(ncn5)NC(=O)C6CC6"  
S4T  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1NC(=O)Nc2ccc(c(c2)C(F)(F)F)CN3CCn4ccnc4C3)Oc5cc(ncn5)NC(=O)C6CC6"  
#
_pdbx_chem_comp_identifier.comp_id          S4T
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-[6-[4-[[4-(6,8-dihydro-5~{H}-imidazo[1,2-a]pyrazin-7-ylmethyl)-3-(trifluoromethyl)phenyl]carbamoylamino]phenoxy]pyrimidin-4-yl]cyclopropanecarboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S4T  "Create component"  2020-11-06  PDBE  
S4T  "Initial release"   2021-03-03  RCSB  
S4T  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     S4T
_pdbx_chem_comp_synonyms.name        "~{N}-[6-[4-[[4-(6,8-dihydro-5~{H}-imidazo[1,2-a]pyrazin-7-ylmethyl)-3-(trifluoromethyl)phenyl]carbamoylamino]phenoxy]pyrimidin-4-yl]cyclopropanecarboxamide"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
