data_S1T
#

_chem_comp.id                                   S1T
_chem_comp.name                                 "2-{4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-5-[(1S)-1-HYDROXYETHYL]-3-METHYL-2-THIENYL}ETHYL TRIHYDROGEN DIPHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H23 N3 O8 P2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-[(1S)-1-HYDROXYETHYL]-3-DEAZA-THDP"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-06-18
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       467.371
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S1T
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       "Corina V3.40"
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S1T  "N1'"   "N1'"   N  0  1  Y  N  N  -20.708  -10.234  17.326   3.669  -2.387   1.071  "N1'"   S1T   1  
S1T  "C2'"   "C2'"   C  0  1  Y  N  N  -21.155   -9.800  18.518   4.718  -3.152   0.844  "C2'"   S1T   2  
S1T  CM2     CM2     C  0  1  N  N  N  -21.830  -10.776  19.449   4.879  -4.428   1.630  CM2     S1T   3  
S1T  "N3'"   "N3'"   N  0  1  Y  N  N  -21.009   -8.511  18.891   5.630  -2.832  -0.052  "N3'"   S1T   4  
S1T  "C4'"   "C4'"   C  0  1  Y  N  N  -20.396   -7.579  18.049   5.520  -1.714  -0.763  "C4'"   S1T   5  
S1T  "N4'"   "N4'"   N  0  1  N  N  N  -20.262   -6.280  18.459   6.480  -1.381  -1.705  "N4'"   S1T   6  
S1T  "C5'"   "C5'"   C  0  1  Y  N  N  -19.916   -8.019  16.748   4.420  -0.881  -0.547  "C5'"   S1T   7  
S1T  "C6'"   "C6'"   C  0  1  Y  N  N  -20.095   -9.389  16.440   3.490  -1.257   0.402  "C6'"   S1T   8  
S1T  "C7'"   "C7'"   C  0  1  N  N  N  -19.195   -7.099  15.701   4.253   0.396  -1.330  "C7'"   S1T   9  
S1T  C3      C3      C  0  1  Y  N  N  -20.075   -5.916  15.164   3.053   1.148  -0.813  C3      S1T  10  
S1T  C2      C2      C  0  1  Y  N  N  -19.859   -4.585  15.526   3.139   2.052   0.164  C2      S1T  11  
S1T  S1      S1      S  0  1  Y  N  N  -21.043   -3.707  14.722   1.544   2.716   0.496  S1      S1T  12  
S1T  C5      C5      C  0  1  Y  N  N  -21.836   -5.017  13.840   0.830   1.698  -0.748  C5      S1T  13  
S1T  C4      C4      C  0  1  Y  N  N  -21.100   -6.138  14.225   1.779   0.957  -1.321  C4      S1T  14  
S1T  CM4     CM4     C  0  1  N  N  N  -21.426   -7.540  13.639   1.487  -0.018  -2.432  CM4     S1T  15  
S1T  C6      C6      C  0  1  N  N  N  -22.963   -4.870  12.896  -0.632   1.673  -1.116  C6      S1T  16  
S1T  C7      C7      C  0  1  N  N  N  -24.303   -4.699  13.633  -1.354   0.629  -0.262  C7      S1T  17  
S1T  O7      O7      O  0  1  N  N  N  -25.294   -4.734  12.622  -2.740   0.605  -0.610  O7      S1T  18  
S1T  PA      PA      P  0  1  N  N  S  -26.679   -4.094  13.141  -3.804  -0.379   0.091  PA      S1T  19  
S1T  O1A     O1A     O  0  1  N  N  N  -27.219   -4.808  14.333  -3.761  -0.186   1.558  O1A     S1T  20  
S1T  O2A     O2A     O  0  1  N  N  N  -27.690   -4.260  11.941  -3.435  -1.906  -0.260  O2A     S1T  21  
S1T  O3A     O3A     O  0  1  N  N  N  -26.583   -2.512  13.506  -5.282  -0.045  -0.451  O3A     S1T  22  
S1T  PB      PB      P  0  1  N  N  N  -25.804   -1.554  12.415  -6.767  -0.337   0.099  PB      S1T  23  
S1T  O1B     O1B     O  0  1  N  N  N  -26.347   -1.815  10.992  -6.828  -0.027   1.545  O1B     S1T  24  
S1T  O2B     O2B     O  0  1  N  N  N  -26.103   -0.073  12.858  -7.823   0.586  -0.692  O2B     S1T  25  
S1T  O3B     O3B     O  0  1  N  N  N  -24.272   -1.760  12.446  -7.131  -1.888  -0.133  O3B     S1T  26  
S1T  CP1     CP1     C  0  1  N  N  S  -18.792   -3.901  16.409   4.408   2.444   0.876  CP1     S1T  27  
S1T  CP2     CP2     C  0  1  N  N  N  -17.363   -4.243  15.967   4.425   1.817   2.272  CP2     S1T  28  
S1T  OP1     OP1     O  0  1  N  N  N  -19.027   -4.079  17.784   4.470   3.866   0.992  OP1     S1T  29  
S1T  HP1     HP1     H  0  1  N  N  N  -18.197   -4.119  18.245   3.734   4.253   1.487  HP1     S1T  30  
S1T  H1      H1      H  0  1  N  N  N  -18.892   -2.818  16.248   5.268   2.088   0.308  H1      S1T  31  
S1T  H61     1H6     H  0  1  N  N  N  -22.787   -3.982  12.271  -1.069   2.655  -0.936  H61     S1T  32  
S1T  H62     2H6     H  0  1  N  N  N  -23.021   -5.782  12.284  -0.737   1.416  -2.170  H62     S1T  33  
S1T  H71     1H7     H  0  1  N  N  N  -24.456   -5.510  14.360  -0.917  -0.353  -0.442  H71     S1T  34  
S1T  H72     2H7     H  0  1  N  N  N  -24.337   -3.760  14.205  -1.249   0.886   0.792  H72     S1T  35  
S1T  H2A     H2A     H  0  1  N  N  N  -28.578   -4.293  12.277  -3.444  -2.105  -1.206  H2A     S1T  36  
S1T  H2B     H2B     H  0  1  N  N  N  -26.163   -0.031  13.805  -8.741   0.463  -0.412  H2B     S1T  37  
S1T  H3B     H3B     H  0  1  N  N  N  -23.940   -1.802  11.557  -7.110  -2.162  -1.060  H3B     S1T  38  
S1T  HM41    1HM4    H  0  0  N  N  N  -21.503   -7.471  12.544   1.335  -1.013  -2.012  HM41    S1T  39  
S1T  HM42    2HM4    H  0  0  N  N  N  -20.625   -8.244  13.907   0.588   0.294  -2.962  HM42    S1T  40  
S1T  HM43    3HM4    H  0  0  N  N  N  -22.381   -7.897  14.052   2.328  -0.042  -3.125  HM43    S1T  41  
S1T  "H7'1"  "1H7'"  H  0  0  N  N  N  -18.308   -6.666  16.186   5.144   1.012  -1.215  "H7'1"  S1T  42  
S1T  "H7'2"  "2H7'"  H  0  0  N  N  N  -18.954   -7.733  14.835   4.107   0.160  -2.384  "H7'2"  S1T  43  
S1T  "H6'"   "H6'"   H  0  1  N  N  N  -19.743   -9.773  15.494   2.626  -0.638   0.596  "H6'"   S1T  44  
S1T  HM21    1HM2    H  0  0  N  N  N  -21.994  -11.729  18.925   4.390  -5.245   1.099  HM21    S1T  45  
S1T  HM22    2HM2    H  0  0  N  N  N  -21.191  -10.946  20.328   5.939  -4.652   1.745  HM22    S1T  46  
S1T  HM23    3HM2    H  0  0  N  N  N  -22.797  -10.364  19.773   4.424  -4.309   2.613  HM23    S1T  47  
S1T  "H4'1"  "1H4'"  H  0  0  N  N  N  -20.229   -6.247  19.458   7.279  -1.924  -1.796  "H4'1"  S1T  48  
S1T  "H4'2"  "2H4'"  H  0  0  N  N  N  -19.417   -5.898  18.085   6.354  -0.605  -2.273  "H4'2"  S1T  49  
S1T  HP21    1HP2    H  0  0  N  N  N  -17.327   -4.325  14.871   4.378   0.732   2.183  HP21    S1T  50  
S1T  HP22    2HP2    H  0  0  N  N  N  -16.677   -3.449  16.298   5.343   2.101   2.786  HP22    S1T  51  
S1T  HP23    3HP2    H  0  0  N  N  N  -17.060   -5.200  16.416   3.565   2.173   2.840  HP23    S1T  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S1T  "N1'"  "C2'"   SING  Y  N   1  
S1T  "N1'"  "C6'"   DOUB  Y  N   2  
S1T  "C2'"  "N3'"   DOUB  Y  N   3  
S1T  "C2'"  CM2     SING  N  N   4  
S1T  CM2    HM21    SING  N  N   5  
S1T  CM2    HM22    SING  N  N   6  
S1T  CM2    HM23    SING  N  N   7  
S1T  "N3'"  "C4'"   SING  Y  N   8  
S1T  "C4'"  "C5'"   DOUB  Y  N   9  
S1T  "C4'"  "N4'"   SING  N  N  10  
S1T  "N4'"  "H4'1"  SING  N  N  11  
S1T  "N4'"  "H4'2"  SING  N  N  12  
S1T  "C5'"  "C7'"   SING  N  N  13  
S1T  "C5'"  "C6'"   SING  Y  N  14  
S1T  "C6'"  "H6'"   SING  N  N  15  
S1T  "C7'"  C3      SING  N  N  16  
S1T  "C7'"  "H7'1"  SING  N  N  17  
S1T  "C7'"  "H7'2"  SING  N  N  18  
S1T  C3     C2      DOUB  Y  N  19  
S1T  C3     C4      SING  Y  N  20  
S1T  C2     CP1     SING  N  N  21  
S1T  C2     S1      SING  Y  N  22  
S1T  S1     C5      SING  Y  N  23  
S1T  C5     C4      DOUB  Y  N  24  
S1T  C5     C6      SING  N  N  25  
S1T  C4     CM4     SING  N  N  26  
S1T  CM4    HM41    SING  N  N  27  
S1T  CM4    HM42    SING  N  N  28  
S1T  CM4    HM43    SING  N  N  29  
S1T  C6     H61     SING  N  N  30  
S1T  C6     H62     SING  N  N  31  
S1T  C6     C7      SING  N  N  32  
S1T  C7     H71     SING  N  N  33  
S1T  C7     H72     SING  N  N  34  
S1T  C7     O7      SING  N  N  35  
S1T  O7     PA      SING  N  N  36  
S1T  PA     O1A     DOUB  N  N  37  
S1T  PA     O2A     SING  N  N  38  
S1T  PA     O3A     SING  N  N  39  
S1T  O2A    H2A     SING  N  N  40  
S1T  O3A    PB      SING  N  N  41  
S1T  PB     O1B     DOUB  N  N  42  
S1T  PB     O2B     SING  N  N  43  
S1T  PB     O3B     SING  N  N  44  
S1T  O2B    H2B     SING  N  N  45  
S1T  O3B    H3B     SING  N  N  46  
S1T  CP1    OP1     SING  N  N  47  
S1T  CP1    H1      SING  N  N  48  
S1T  CP1    CP2     SING  N  N  49  
S1T  CP2    HP21    SING  N  N  50  
S1T  CP2    HP22    SING  N  N  51  
S1T  CP2    HP23    SING  N  N  52  
S1T  OP1    HP1     SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S1T  SMILES            ACDLabs               10.04  "O=P(O)(O)OP(=O)(O)OCCc1sc(c(c1C)Cc2cnc(nc2N)C)C(O)C"  
S1T  SMILES_CANONICAL  CACTVS                3.341  "C[C@H](O)c1sc(CCO[P@@](O)(=O)O[P](O)(O)=O)c(C)c1Cc2cnc(C)nc2N"  
S1T  SMILES            CACTVS                3.341  "C[CH](O)c1sc(CCO[P](O)(=O)O[P](O)(O)=O)c(C)c1Cc2cnc(C)nc2N"  
S1T  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1c(sc(c1Cc2cnc(nc2N)C)[C@H](C)O)CCO[P@](=O)(O)OP(=O)(O)O"  
S1T  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1c(sc(c1Cc2cnc(nc2N)C)C(C)O)CCOP(=O)(O)OP(=O)(O)O"  
S1T  InChI             InChI                 1.03   "InChI=1S/C15H23N3O8P2S/c1-8-12(6-11-7-17-10(3)18-15(11)16)14(9(2)19)29-13(8)4-5-25-28(23,24)26-27(20,21)22/h7,9,19H,4-6H2,1-3H3,(H,23,24)(H2,16,17,18)(H2,20,21,22)/t9-/m0/s1"  
S1T  InChIKey          InChI                 1.03   ORVRYSKZCUVOLA-VIFPVBQESA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S1T  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-[(1S)-1-hydroxyethyl]-3-methylthiophen-2-yl}ethyl trihydrogen diphosphate"  
S1T  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-[4-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-5-(1-hydroxyethyl)-3-methyl-thiophen-2-yl]ethyl phosphono hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S1T  "Create component"   2007-06-18  RCSB  
S1T  "Modify descriptor"  2011-06-04  RCSB  
S1T  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     S1T
_pdbx_chem_comp_synonyms.name        "2-[(1S)-1-HYDROXYETHYL]-3-DEAZA-THDP"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
