data_RGT
#

_chem_comp.id                                   RGT
_chem_comp.name                                 
;2-amino-9-{5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}-9H-purin-6-yl
5-O-phosphono-beta-D-ribofuranoside
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H25 N5 O21 P4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(Ribose-5'-phosphate)-(guanosine-5'-triphosphate)"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-07-31
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       735.275
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RGT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3DZI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RGT  O2P     O2P     O  0  1  N  N  N   5.585   4.038   3.830    9.961   2.586   0.291  O2P     RGT   1  
RGT  P       P       P  0  1  N  N  N   4.138   4.543   4.036   10.046   1.282  -0.649  P       RGT   2  
RGT  O3P     O3P     O  0  1  N  N  N   3.737   5.811   3.250    9.624   1.636  -2.023  O3P     RGT   3  
RGT  O1P     O1P     O  0  1  N  N  N   3.695   4.518   5.518   11.561   0.738  -0.677  O1P     RGT   4  
RGT  O5R     O5R     O  0  1  N  N  N   3.213   3.394   3.336    9.075   0.137  -0.068  O5R     RGT   5  
RGT  C5R     C5R     C  0  1  N  N  N   1.769   3.471   3.286    8.848  -1.105  -0.737  C5R     RGT   6  
RGT  C4R     C4R     C  0  1  N  N  R   1.221   3.724   1.882    7.878  -1.957   0.084  C4R     RGT   7  
RGT  O4R     O4R     O  0  1  N  N  N   1.734   2.711   1.008    6.581  -1.339   0.104  O4R     RGT   8  
RGT  C3R     C3R     C  0  1  N  N  S  -0.303   3.627   1.790    7.719  -3.345  -0.568  C3R     RGT   9  
RGT  O3R     O3R     O  0  1  N  N  N  -0.825   4.757   1.081    8.132  -4.372   0.334  O3R     RGT  10  
RGT  C2R     C2R     C  0  1  N  N  R  -0.625   2.408   0.949    6.202  -3.454  -0.860  C2R     RGT  11  
RGT  O2R     O2R     O  0  1  N  N  N  -1.414   2.874  -0.146    5.719  -4.765  -0.561  O2R     RGT  12  
RGT  C1R     C1R     C  0  1  N  N  S   0.697   1.986   0.337    5.607  -2.405   0.119  C1R     RGT  13  
RGT  O6      O6      O  0  1  N  N  N   1.778   0.586   1.099    4.341  -1.936  -0.350  O6      RGT  14  
RGT  C6      C6      C  0  1  Y  N  N   1.999  -0.214   2.014    3.701  -1.021   0.417  C6      RGT  15  
RGT  C5      C5      C  0  1  Y  N  N   3.292  -0.407   2.380    2.453  -0.508   0.030  C5      RGT  16  
RGT  C4      C4      C  0  1  Y  N  N   3.547  -1.300   3.416    1.834   0.438   0.864  C4      RGT  17  
RGT  N3      N3      N  0  1  Y  N  N   2.547  -1.985   4.073    2.444   0.814   1.982  N3      RGT  18  
RGT  C2      C2      C  0  1  Y  N  N   1.240  -1.797   3.699    3.621   0.305   2.309  C2      RGT  19  
RGT  N2      N2      N  0  1  N  N  N   0.233  -2.459   4.306    4.228   0.720   3.483  N2      RGT  20  
RGT  N1      N1      N  0  1  Y  N  N   0.990  -0.915   2.658    4.237  -0.596   1.553  N1      RGT  21  
RGT  N7      N7      N  0  1  Y  N  N   4.437   0.115   1.909    1.628  -0.709  -1.028  N7      RGT  22  
RGT  C8      C8      C  0  1  Y  N  N   5.463  -0.430   2.636    0.569   0.035  -0.898  C8      RGT  23  
RGT  N9      N9      N  0  1  Y  N  N   4.910  -1.301   3.570    0.648   0.762   0.254  N9      RGT  24  
RGT  "C1'"   "C1'"   C  0  1  N  N  R   5.556  -2.162   4.577   -0.350   1.714   0.748  "C1'"   RGT  25  
RGT  "C2'"   "C2'"   C  0  1  N  N  R   7.069  -2.264   4.468   -0.028   3.139   0.247  "C2'"   RGT  26  
RGT  "O2'"   "O2'"   O  0  1  N  N  N   7.494  -2.933   3.293    0.654   3.884   1.258  "O2'"   RGT  27  
RGT  "C3'"   "C3'"   C  0  1  N  N  S   7.301  -3.044   5.737   -1.414   3.759  -0.040  "C3'"   RGT  28  
RGT  "O3'"   "O3'"   O  0  1  N  N  N   6.860  -4.374   5.504   -1.631   4.904   0.786  "O3'"   RGT  29  
RGT  "O4'"   "O4'"   O  0  1  N  N  N   5.311  -1.770   5.921   -1.649   1.413   0.194  "O4'"   RGT  30  
RGT  "C4'"   "C4'"   C  0  1  N  N  R   6.321  -2.394   6.717   -2.409   2.634   0.322  "C4'"   RGT  31  
RGT  "C5'"   "C5'"   C  0  1  N  N  N   6.993  -1.407   7.681   -3.589   2.632  -0.653  "C5'"   RGT  32  
RGT  "O5'"   "O5'"   O  0  1  N  N  N   7.563  -0.335   6.959   -4.552   1.664  -0.233  "O5'"   RGT  33  
RGT  PA      PA      P  0  1  N  N  R   7.862   1.097   7.645   -5.925   1.392  -1.029  PA      RGT  34  
RGT  O1A     O1A     O  0  1  N  N  N   7.064   1.286   8.927   -5.592   0.791  -2.485  O1A     RGT  35  
RGT  O2A     O2A     O  0  1  N  N  N   7.621   2.195   6.629   -6.669   2.662  -1.178  O2A     RGT  36  
RGT  O3A     O3A     O  0  1  N  N  N   9.419   1.039   8.054   -6.822   0.338  -0.206  O3A     RGT  37  
RGT  PB      PB      P  0  1  N  N  R  10.575   0.884   6.939   -8.367  -0.110  -0.275  PB      RGT  38  
RGT  O1B     O1B     O  0  1  N  N  N  10.532   2.054   5.963   -8.757  -0.320  -1.687  O1B     RGT  39  
RGT  O2B     O2B     O  0  1  N  N  N  10.460  -0.453   6.213   -9.289   1.041   0.371  O2B     RGT  40  
RGT  O3B     O3B     O  0  1  N  N  N  11.909   0.972   7.865   -8.566  -1.480   0.546  O3B     RGT  41  
RGT  PG      PG      P  0  1  N  N  N  13.399   0.712   7.279   -9.689  -2.634   0.542  PG      RGT  42  
RGT  O1G     O1G     O  0  1  N  N  N  14.216   1.945   7.616   -9.613  -3.462   1.920  O1G     RGT  43  
RGT  O3G     O3G     O  0  1  N  N  N  13.344   0.499   5.779  -11.028  -2.018   0.410  O3G     RGT  44  
RGT  O2G     O2G     O  0  1  N  N  N  14.016  -0.514   7.936   -9.432  -3.629  -0.697  O2G     RGT  45  
RGT  HO2P    HO2P    H  0  0  N  N  N   5.756   3.934   2.901   10.522   3.318   0.000  HO2P    RGT  46  
RGT  HO1P    HO1P    H  0  0  N  N  N   4.462   4.513   6.078   11.904   0.486   0.192  HO1P    RGT  47  
RGT  H5R     H5R     H  0  1  N  N  N   1.362   2.514   3.646    8.421  -0.915  -1.722  H5R     RGT  48  
RGT  H5RA    H5RA    H  0  0  N  N  N   1.466   4.323   3.913    9.794  -1.636  -0.848  H5RA    RGT  49  
RGT  H4R     H4R     H  0  1  N  N  N   1.526   4.745   1.611    8.252  -2.067   1.102  H4R     RGT  50  
RGT  H3R     H3R     H  0  1  N  N  N  -0.732   3.578   2.802    8.290  -3.399  -1.495  H3R     RGT  51  
RGT  HO3R    HO3R    H  0  0  N  N  N  -0.941   5.483   1.683    8.053  -5.267  -0.025  HO3R    RGT  52  
RGT  H2R     H2R     H  0  1  N  N  N  -1.121   1.612   1.524    5.985  -3.188  -1.895  H2R     RGT  53  
RGT  HO2R    HO2R    H  0  0  N  N  N  -2.316   2.977   0.134    4.773  -4.883  -0.728  HO2R    RGT  54  
RGT  H1R     H1R     H  0  1  N  N  N   0.356   1.939  -0.708    5.514  -2.826   1.120  H1R     RGT  55  
RGT  HN2     HN2     H  0  1  N  N  N   0.471  -2.623   5.263    3.789   1.374   4.050  HN2     RGT  56  
RGT  HN2A    HN2A    H  0  0  N  N  N  -0.602  -1.911   4.259    5.090   0.358   3.738  HN2A    RGT  57  
RGT  H8      H8      H  0  1  N  N  N   6.515  -0.221   2.507   -0.252   0.072  -1.599  H8      RGT  58  
RGT  "H1'"   "H1'"   H  0  1  N  N  N   5.087  -3.129   4.344   -0.387   1.692   1.837  "H1'"   RGT  59  
RGT  "H2'"   "H2'"   H  0  1  N  N  N   7.624  -1.318   4.381    0.568   3.098  -0.665  "H2'"   RGT  60  
RGT  "HO2'"  "HO2'"  H  0  0  N  N  N   7.589  -2.304   2.587    0.881   4.787   0.996  "HO2'"  RGT  61  
RGT  "H3'"   "H3'"   H  0  1  N  N  N   8.345  -3.049   6.083   -1.504   4.023  -1.094  "H3'"   RGT  62  
RGT  "HO3'"  "HO3'"  H  0  0  N  N  N   6.762  -4.516   4.570   -0.995   5.619   0.642  "HO3'"  RGT  63  
RGT  "H4'"   "H4'"   H  0  1  N  N  N   5.888  -3.157   7.380   -2.763   2.756   1.346  "H4'"   RGT  64  
RGT  "H5'"   "H5'"   H  0  1  N  N  N   6.241  -1.014   8.381   -4.049   3.620  -0.669  "H5'"   RGT  65  
RGT  "H5'A"  "H5'A"  H  0  0  N  N  N   7.786  -1.929   8.237   -3.233   2.381  -1.652  "H5'A"  RGT  66  
RGT  HO1A    HO1A    H  0  0  N  N  N   7.658   1.325   9.667   -5.104  -0.043  -2.463  HO1A    RGT  67  
RGT  HO2B    HO2B    H  0  0  N  N  N  10.436  -0.304   5.275   -9.089   1.232   1.297  HO2B    RGT  68  
RGT  HO1G    HO1G    H  0  0  N  N  N  14.387   1.967   8.550  -10.263  -4.175   1.987  HO1G    RGT  69  
RGT  HO2G    HO2G    H  0  0  N  N  N  14.145  -1.192   7.284   -8.571  -4.069  -0.676  HO2G    RGT  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RGT  O2P    P       SING  N  N   1  
RGT  O2P    HO2P    SING  N  N   2  
RGT  O3P    P       DOUB  N  N   3  
RGT  O5R    P       SING  N  N   4  
RGT  P      O1P     SING  N  N   5  
RGT  O1P    HO1P    SING  N  N   6  
RGT  C5R    O5R     SING  N  N   7  
RGT  C4R    C5R     SING  N  N   8  
RGT  C5R    H5R     SING  N  N   9  
RGT  C5R    H5RA    SING  N  N  10  
RGT  O4R    C4R     SING  N  N  11  
RGT  C3R    C4R     SING  N  N  12  
RGT  C4R    H4R     SING  N  N  13  
RGT  C1R    O4R     SING  N  N  14  
RGT  C2R    C3R     SING  N  N  15  
RGT  O3R    C3R     SING  N  N  16  
RGT  C3R    H3R     SING  N  N  17  
RGT  O3R    HO3R    SING  N  N  18  
RGT  O2R    C2R     SING  N  N  19  
RGT  C1R    C2R     SING  N  N  20  
RGT  C2R    H2R     SING  N  N  21  
RGT  O2R    HO2R    SING  N  N  22  
RGT  C1R    O6      SING  N  N  23  
RGT  C1R    H1R     SING  N  N  24  
RGT  O6     C6      SING  N  N  25  
RGT  C6     C5      DOUB  Y  N  26  
RGT  C6     N1      SING  Y  N  27  
RGT  N7     C5      SING  Y  N  28  
RGT  C5     C4      SING  Y  N  29  
RGT  C4     N9      SING  Y  N  30  
RGT  C4     N3      DOUB  Y  N  31  
RGT  C2     N3      SING  Y  N  32  
RGT  N1     C2      DOUB  Y  N  33  
RGT  C2     N2      SING  N  N  34  
RGT  N2     HN2     SING  N  N  35  
RGT  N2     HN2A    SING  N  N  36  
RGT  N7     C8      DOUB  Y  N  37  
RGT  C8     N9      SING  Y  N  38  
RGT  C8     H8      SING  N  N  39  
RGT  N9     "C1'"   SING  N  N  40  
RGT  "C2'"  "C1'"   SING  N  N  41  
RGT  "C1'"  "O4'"   SING  N  N  42  
RGT  "C1'"  "H1'"   SING  N  N  43  
RGT  "O2'"  "C2'"   SING  N  N  44  
RGT  "C2'"  "C3'"   SING  N  N  45  
RGT  "C2'"  "H2'"   SING  N  N  46  
RGT  "O2'"  "HO2'"  SING  N  N  47  
RGT  "O3'"  "C3'"   SING  N  N  48  
RGT  "C3'"  "C4'"   SING  N  N  49  
RGT  "C3'"  "H3'"   SING  N  N  50  
RGT  "O3'"  "HO3'"  SING  N  N  51  
RGT  "O4'"  "C4'"   SING  N  N  52  
RGT  "C4'"  "C5'"   SING  N  N  53  
RGT  "C4'"  "H4'"   SING  N  N  54  
RGT  "O5'"  "C5'"   SING  N  N  55  
RGT  "C5'"  "H5'"   SING  N  N  56  
RGT  "C5'"  "H5'A"  SING  N  N  57  
RGT  "O5'"  PA      SING  N  N  58  
RGT  O2A    PA      DOUB  N  N  59  
RGT  PA     O3A     SING  N  N  60  
RGT  PA     O1A     SING  N  N  61  
RGT  O1A    HO1A    SING  N  N  62  
RGT  PB     O3A     SING  N  N  63  
RGT  O1B    PB      DOUB  N  N  64  
RGT  O2B    PB      SING  N  N  65  
RGT  PB     O3B     SING  N  N  66  
RGT  O2B    HO2B    SING  N  N  67  
RGT  PG     O3B     SING  N  N  68  
RGT  O3G    PG      DOUB  N  N  69  
RGT  PG     O1G     SING  N  N  70  
RGT  PG     O2G     SING  N  N  71  
RGT  O1G    HO1G    SING  N  N  72  
RGT  O2G    HO2G    SING  N  N  73  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RGT  SMILES            ACDLabs               10.04  "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC4OC(n2cnc1c(nc(nc12)N)OC3OC(C(O)C3O)COP(=O)(O)O)C(O)C4O"  
RGT  SMILES_CANONICAL  CACTVS                3.341  "Nc1nc(O[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)c3ncn([C@@H]4O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]4O)c3n1"  
RGT  SMILES            CACTVS                3.341  "Nc1nc(O[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)c3ncn([CH]4O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]4O)c3n1"  
RGT  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)nc(nc2O[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(O)O)O)O)N"  
RGT  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)nc(nc2OC4C(C(C(O4)COP(=O)(O)O)O)O)N"  
RGT  InChI             InChI                 1.03   "InChI=1S/C15H25N5O21P4/c16-15-18-11-6(12(19-15)39-14-10(24)8(22)5(38-14)1-35-42(25,26)27)17-3-20(11)13-9(23)7(21)4(37-13)2-36-44(31,32)41-45(33,34)40-43(28,29)30/h3-5,7-10,13-14,21-24H,1-2H2,(H,31,32)(H,33,34)(H2,16,18,19)(H2,25,26,27)(H2,28,29,30)/t4-,5-,7-,8-,9-,10-,13-,14+/m1/s1"  
RGT  InChIKey          InChI                 1.03   CZRRKFZDNKXXKR-MHJQXXNXSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RGT  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-amino-9-{5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}-9H-purin-6-yl 5-O-phosphono-beta-D-ribofuranoside"  
RGT  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-[2-amino-6-[(2S,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]oxy-purin-9-yl]-3,4-dihydroxy-oxolan-2-yl]methyl (hydroxy-phosphonooxy-phosphoryl) hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RGT  "Create component"      2008-07-31  RCSB  
RGT  "Modify aromatic_flag"  2011-06-04  RCSB  
RGT  "Modify descriptor"     2011-06-04  RCSB  
RGT  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     RGT
_pdbx_chem_comp_synonyms.name        "(Ribose-5'-phosphate)-(guanosine-5'-triphosphate)"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
