data_R4T
#

_chem_comp.id                                   R4T
_chem_comp.name                                 "9-[(1~{R},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]purin-6-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H24 F2 N10 O8 P2 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   2
_chem_comp.pdbx_initial_date                    2020-09-02
_chem_comp.pdbx_modified_date                   2021-10-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       696.541
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    R4T
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7A90
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R4T  C1    C1    C  0  1  Y  N  N  -16.005  21.457   -7.886   -7.307  -0.084  -0.052  C1    R4T   1  
R4T  C2    C2    C  0  1  Y  N  N  -15.555  20.122   -7.633   -8.088  -0.829   0.856  C2    R4T   2  
R4T  C3    C3    C  0  1  Y  N  N  -14.270  19.757   -8.220   -9.434  -0.490   1.002  C3    R4T   3  
R4T  C4    C4    C  0  1  Y  N  N  -17.462  20.473   -6.697   -6.078  -1.645   0.906  C4    R4T   4  
R4T  C5    C5    C  0  1  N  N  R  -19.521  22.759   -8.951   -2.690   0.631  -0.064  C5    R4T   5  
R4T  C6    C6    C  0  1  N  N  R  -18.118  23.194   -8.784   -4.189   0.983  -0.043  C6    R4T   6  
R4T  N1    N1    N  0  1  Y  N  N  -15.277  22.287   -8.605   -7.877   0.901  -0.732  N1    R4T   7  
R4T  N2    N2    N  0  1  Y  N  N  -17.144  21.605   -7.299   -6.047  -0.624   0.004  N2    R4T   8  
R4T  N3    N3    N  0  1  Y  N  N  -16.495  19.566   -6.894   -7.274  -1.764   1.404  N3    R4T   9  
R4T  O1    O1    O  0  1  N  N  N  -19.143  22.763   -6.764   -3.935  -1.250  -0.868  O1    R4T  10  
R4T  C7    C7    C  0  1  N  N  R  -17.877  22.870   -7.355   -4.881  -0.183  -0.766  C7    R4T  11  
R4T  C8    C8    C  0  1  N  N  R  -20.127  23.180   -7.650   -2.609  -0.728  -0.774  C8    R4T  12  
R4T  C9    C9    C  0  1  N  N  N  -21.425  22.498   -7.301   -1.731  -1.685   0.036  C9    R4T  13  
R4T  C10   C10   C  0  1  Y  N  N  -21.899  14.121   -8.707    9.144  -1.202  -0.548  C10   R4T  14  
R4T  C11   C11   C  0  1  Y  N  N  -21.457  16.002   -9.921    7.306   0.078  -0.051  C11   R4T  15  
R4T  C12   C12   C  0  1  Y  N  N  -20.121  15.553  -10.173    8.090   0.824   0.852  C12   R4T  16  
R4T  C13   C13   C  0  1  Y  N  N  -19.754  14.268   -9.587    9.436   0.483   0.996  C13   R4T  17  
R4T  C14   C14   C  0  1  Y  N  N  -20.474  17.458  -11.111    6.084   1.648   0.900  C14   R4T  18  
R4T  C15   C15   C  0  1  N  N  R  -22.761  19.519   -8.858    2.686  -0.624  -0.063  C15   R4T  19  
R4T  O2    O2    O  0  1  N  N  N  -21.230  21.161   -6.909   -0.624  -2.108  -0.762  O2    R4T  20  
R4T  C17   C16   C  0  1  N  N  R  -22.870  17.872  -10.452    4.880   0.183  -0.764  C17   R4T  21  
R4T  C18   C17   C  0  1  N  N  R  -23.184  20.121  -10.159    2.609   0.735  -0.776  C18   R4T  22  
R4T  C19   C18   C  0  1  N  N  N  -22.504  21.421  -10.512    1.735   1.696   0.032  C19   R4T  23  
R4T  C16   C19   C  0  1  N  N  R  -23.193  18.116   -9.023    4.184  -0.977  -0.035  C16   R4T  24  
R4T  N4    N4    N  0  1  Y  N  N  -20.681  13.642   -8.887    9.913  -0.524   0.285  N4    R4T  25  
R4T  N     N5    N  0  1  Y  N  N  -13.644  20.685   -8.920   -9.915   0.512   0.285  N     R4T  26  
R4T  C     C20   C  0  1  Y  N  N  -14.124  21.902   -9.100   -9.152   1.180  -0.561  C     R4T  27  
R4T  O     O3    O  0  1  N  N  N  -22.025  18.933   -6.327    0.779  -2.299   1.328  O     R4T  28  
R4T  N11   N6    N  1  1  N  N  N  -13.630  18.434   -8.093  -10.255  -1.194   1.887  N11   R4T  29  
R4T  F6    F1    F  0  1  N  N  N  -24.512  18.020   -8.877    4.412  -2.181  -0.709  F6    R4T  30  
R4T  F9    F2    F  0  1  N  N  N  -18.027  24.513   -8.928   -4.416   2.182  -0.726  F9    R4T  31  
R4T  N5    N7    N  0  1  Y  N  N  -22.285  15.273   -9.202    7.870  -0.916  -0.723  N5    R4T  32  
R4T  N6    N8    N  0  1  Y  N  N  -21.605  17.141  -10.508    6.048   0.623   0.002  N6    R4T  33  
R4T  N7    N9    N  0  1  Y  N  N  -19.565  16.492  -10.914    7.281   1.765   1.397  N7    R4T  34  
R4T  N9    N10   N  1  1  N  N  N  -18.431  13.628   -9.714   10.261   1.188   1.877  N9    R4T  35  
R4T  O10   O4    O  0  1  N  N  N  -20.087  23.360  -10.064   -1.959   1.618  -0.794  O10   R4T  36  
R4T  O22   O5    O  0  1  N  N  N  -18.937  22.020  -11.481   -0.776   2.296   1.330  O22   R4T  37  
R4T  O5    O6    O  0  1  N  N  N  -22.766  19.138  -11.044    3.937   1.252  -0.871  O5    R4T  38  
R4T  O7    O7    O  0  1  N  N  N  -23.362  20.085   -7.745    1.957  -1.611  -0.796  O7    R4T  39  
R4T  O8    O8    O  0  1  N  N  N  -21.164  21.226  -10.895    0.623   2.112  -0.763  O8    R4T  40  
R4T  P     P1    P  0  1  N  N  R  -22.430  20.252   -6.564    0.802  -2.517  -0.136  P     R4T  41  
R4T  P1    P2    P  0  1  N  N  R  -20.255  22.426  -11.243   -0.801   2.520  -0.132  P1    R4T  42  
R4T  S3    S1    S  0  1  N  N  N  -23.488  21.022   -5.095    1.190  -4.562  -0.540  S3    R4T  43  
R4T  S4    S2    S  0  1  N  N  N  -21.025  23.484  -12.714   -1.188   4.567  -0.527  S4    R4T  44  
R4T  H4    H1    H  0  1  N  N  N  -18.366  20.304   -6.131   -5.234  -2.264   1.168  H4    R4T  45  
R4T  H5    H2    H  0  1  N  N  N  -19.560  21.663   -9.033   -2.306   0.552   0.953  H5    R4T  46  
R4T  H6    H3    H  0  1  N  N  N  -17.442  22.627   -9.441   -4.547   1.058   0.984  H6    R4T  47  
R4T  H7    H4    H  0  1  N  N  N  -17.287  23.671   -6.885   -5.193   0.132  -1.762  H7    R4T  48  
R4T  H8    H5    H  0  1  N  N  N  -20.259  24.272   -7.629   -2.190  -0.599  -1.772  H8    R4T  49  
R4T  H91   H6    H  0  1  N  N  N  -21.902  23.044   -6.474   -1.364  -1.174   0.927  H91   R4T  50  
R4T  H92   H7    H  0  1  N  N  N  -22.084  22.517   -8.182   -2.319  -2.554   0.332  H92   R4T  51  
R4T  H10   H8    H  0  1  N  N  N  -22.604  13.542   -8.130    9.576  -2.017  -1.109  H10   R4T  52  
R4T  H14   H9    H  0  1  N  N  N  -20.306  18.361  -11.679    5.242   2.272   1.160  H14   R4T  53  
R4T  H15   H10   H  0  1  N  N  N  -21.665  19.560   -8.777    2.297  -0.542   0.952  H15   R4T  54  
R4T  H17   H11   H  0  1  N  N  N  -23.671  17.281  -10.920    5.189  -0.138  -1.759  H17   R4T  55  
R4T  H18   H12   H  0  1  N  N  N  -24.276  20.251  -10.179    2.190   0.605  -1.774  H18   R4T  56  
R4T  H192  H13   H  0  0  N  N  N  -22.530  22.085   -9.636    1.372   1.191   0.928  H192  R4T  57  
R4T  H191  H14   H  0  0  N  N  N  -23.047  21.891  -11.345    2.323   2.568   0.320  H191  R4T  58  
R4T  H16   H15   H  0  1  N  N  N  -22.623  17.442   -8.366    4.538  -1.045   0.993  H16   R4T  59  
R4T  H     H16   H  0  1  N  N  N  -13.545  22.608   -9.677   -9.588   1.991  -1.126  H     R4T  60  
R4T  H111  H17   H  0  0  N  N  N  -12.761  18.435   -8.587  -10.224  -0.756   2.796  H111  R4T  61  
R4T  H113  H18   H  0  0  N  N  N  -13.464  18.236   -7.127  -11.204  -1.187   1.543  H113  R4T  62  
R4T  HN92  H19   H  0  0  N  N  N  -18.432  12.759   -9.219   10.231   0.753   2.787  HN92  R4T  63  
R4T  HN9   H20   H  0  1  N  N  N  -18.233  13.462  -10.680   11.208   1.180   1.531  HN9   R4T  64  
R4T  HS3   H21   H  0  1  N  N  N  -23.529  20.038   -4.247    0.163  -5.189   0.060  HS3   R4T  65  
R4T  HS4   H22   H  0  1  N  N  N  -20.041  23.523  -13.563   -0.159   5.191   0.074  HS4   R4T  66  
R4T  HN91  HN91  H  0  0  N  N  N  -17.731  14.230   -9.329    9.938   2.142   1.950  HN91  R4T  67  
R4T  H112  H112  H  0  0  N  N  N  -14.232  17.734   -8.478   -9.931  -2.146   1.961  H112  R4T  68  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R4T  S4    P1    SING  N  N   1  
R4T  O22   P1    DOUB  N  N   2  
R4T  P1    O8    SING  N  N   3  
R4T  P1    O10   SING  N  N   4  
R4T  C14   N7    DOUB  Y  N   5  
R4T  C14   N6    SING  Y  N   6  
R4T  O5    C17   SING  N  N   7  
R4T  O5    C18   SING  N  N   8  
R4T  N7    C12   SING  Y  N   9  
R4T  O8    C19   SING  N  N  10  
R4T  C19   C18   SING  N  N  11  
R4T  N6    C17   SING  N  N  12  
R4T  N6    C11   SING  Y  N  13  
R4T  C17   C16   SING  N  N  14  
R4T  C12   C11   DOUB  Y  N  15  
R4T  C12   C13   SING  Y  N  16  
R4T  C18   C15   SING  N  N  17  
R4T  O10   C5    SING  N  N  18  
R4T  C11   N5    SING  Y  N  19  
R4T  N9    C13   SING  N  N  20  
R4T  C13   N4    DOUB  Y  N  21  
R4T  N5    C10   DOUB  Y  N  22  
R4T  C     N     DOUB  Y  N  23  
R4T  C     N1    SING  Y  N  24  
R4T  C16   F6    SING  N  N  25  
R4T  C16   C15   SING  N  N  26  
R4T  C5    C6    SING  N  N  27  
R4T  C5    C8    SING  N  N  28  
R4T  F9    C6    SING  N  N  29  
R4T  N     C3    SING  Y  N  30  
R4T  N4    C10   SING  Y  N  31  
R4T  C15   O7    SING  N  N  32  
R4T  C6    C7    SING  N  N  33  
R4T  N1    C1    DOUB  Y  N  34  
R4T  C3    N11   SING  N  N  35  
R4T  C3    C2    DOUB  Y  N  36  
R4T  C1    C2    SING  Y  N  37  
R4T  C1    N2    SING  Y  N  38  
R4T  O7    P     SING  N  N  39  
R4T  C8    C9    SING  N  N  40  
R4T  C8    O1    SING  N  N  41  
R4T  C2    N3    SING  Y  N  42  
R4T  C7    N2    SING  N  N  43  
R4T  C7    O1    SING  N  N  44  
R4T  C9    O2    SING  N  N  45  
R4T  N2    C4    SING  Y  N  46  
R4T  O2    P     SING  N  N  47  
R4T  N3    C4    DOUB  Y  N  48  
R4T  P     O     DOUB  N  N  49  
R4T  P     S3    SING  N  N  50  
R4T  C4    H4    SING  N  N  51  
R4T  C5    H5    SING  N  N  52  
R4T  C6    H6    SING  N  N  53  
R4T  C7    H7    SING  N  N  54  
R4T  C8    H8    SING  N  N  55  
R4T  C9    H91   SING  N  N  56  
R4T  C9    H92   SING  N  N  57  
R4T  C10   H10   SING  N  N  58  
R4T  C14   H14   SING  N  N  59  
R4T  C15   H15   SING  N  N  60  
R4T  C17   H17   SING  N  N  61  
R4T  C18   H18   SING  N  N  62  
R4T  C19   H192  SING  N  N  63  
R4T  C19   H191  SING  N  N  64  
R4T  C16   H16   SING  N  N  65  
R4T  C     H     SING  N  N  66  
R4T  N11   H111  SING  N  N  67  
R4T  N11   H113  SING  N  N  68  
R4T  N9    HN92  SING  N  N  69  
R4T  N9    HN9   SING  N  N  70  
R4T  S3    HS3   SING  N  N  71  
R4T  S4    HS4   SING  N  N  72  
R4T  HN91  N9    SING  N  N  73  
R4T  N11   H112  SING  N  N  74  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R4T  InChI             InChI                 1.03     "InChI=1S/C20H22F2N10O8P2S2/c21-9-13-7(37-19(9)31-5-29-11-15(23)25-3-27-17(11)31)1-35-41(33,43)40-14-8(2-36-42(34,44)39-13)38-20(10(14)22)32-6-30-12-16(24)26-4-28-18(12)32/h3-10,13-14,19-20H,1-2H2,(H,33,43)(H,34,44)(H2,23,25,27)(H2,24,26,28)/t7-,8-,9-,10-,13-,14-,19-,20-,41-,42-/m1/s1"  
R4T  InChIKey          InChI                 1.03     IAOSONHXVQMOMS-WLDRUBBVSA-N  
R4T  SMILES_CANONICAL  CACTVS                3.385    "[NH3+]c1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P@](S)(=O)O[C@H]5[C@@H](F)[C@@H](O[C@@H]5CO[P@](S)(=O)O[C@H]4[C@H]3F)n6cnc7c([NH3+])ncnc67"  
R4T  SMILES            CACTVS                3.385    "[NH3+]c1ncnc2n(cnc12)[CH]3O[CH]4CO[P](S)(=O)O[CH]5[CH](F)[CH](O[CH]5CO[P](S)(=O)O[CH]4[CH]3F)n6cnc7c([NH3+])ncnc67"  
R4T  SMILES_CANONICAL  "OpenEye OEToolkits"  3.1.0.0  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@](=O)(O[C@@H]5[C@@H](CO[P@](=O)(O4)S)O[C@H]([C@@H]5F)n6cnc7c6ncnc7[NH3+])S)F)[NH3+]"  
R4T  SMILES            "OpenEye OEToolkits"  3.1.0.0  "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(COP(=O)(O4)S)OC(C5F)n6cnc7c6ncnc7[NH3+])S)F)[NH3+]"  
#
_pdbx_chem_comp_identifier.comp_id          R4T
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  3.1.0.0
_pdbx_chem_comp_identifier.identifier       "[9-[(1~{R},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{R})-17-(6-azaniumylpurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]purin-6-yl]azanium"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R4T  "Create component"  2020-09-02  PDBE  
R4T  "Modify atom id"    2021-09-29  PDBE  
R4T  "Initial release"   2021-10-06  RCSB  
##
