data_QBT
# 
_chem_comp.id                                    QBT 
_chem_comp.name                                  "[(2R,3S,5R)-3-HYDROXY-5-[(5S)-5-METHYL-2,4-DIOXO-1,3-DIAZINAN-1-YL]OXOLAN-2-YL]METHYL DIHYDROGEN PHOSPHATE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H17 N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-12-08 
_chem_comp.pdbx_modified_date                    2022-06-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        324.224 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     QBT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2Y1J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
QBT P      P      P 0 1 N N N -24.442 11.604 -27.837 -4.136 1.144  -0.030 P      QBT 1  
QBT O1P    O1P    O 0 1 N N N -24.618 10.594 -28.956 -5.413 0.188  0.191  O1P    QBT 2  
QBT O2P    O2P    O 0 1 N N N -24.403 13.061 -28.147 -3.797 1.817  1.244  O2P    QBT 3  
QBT "O5'"  "O5'"  O 0 1 N N N -25.520 11.366 -26.668 -2.882 0.260  -0.520 "O5'"  QBT 4  
QBT "C5'"  "C5'"  C 0 1 N N N -25.996 10.026 -26.523 -2.268 -0.739 0.297  "C5'"  QBT 5  
QBT "C4'"  "C4'"  C 0 1 N N R -27.217 9.991  -25.608 -1.112 -1.385 -0.470 "C4'"  QBT 6  
QBT "O4'"  "O4'"  O 0 1 N N N -26.942 10.620 -24.341 -0.053 -0.429 -0.692 "O4'"  QBT 7  
QBT "C3'"  "C3'"  C 0 1 N N S -28.372 10.730 -26.249 -0.435 -2.484 0.387  "C3'"  QBT 8  
QBT "O3'"  "O3'"  O 0 1 N N N -29.570 9.964  -26.047 -1.105 -3.736 0.234  "O3'"  QBT 9  
QBT "C2'"  "C2'"  C 0 1 N N N -28.453 12.029 -25.484 0.987  -2.540 -0.223 "C2'"  QBT 10 
QBT "C1'"  "C1'"  C 0 1 N N R -27.940 11.600 -24.077 1.147  -1.182 -0.934 "C1'"  QBT 11 
QBT N1     N1     N 0 1 N N N -27.330 12.640 -23.249 2.303  -0.467 -0.387 N1     QBT 12 
QBT C2     C2     C 0 1 N N N -27.583 12.757 -21.924 2.293  -0.079 0.899  C2     QBT 13 
QBT O2     O2     O 0 1 N N N -28.360 12.035 -21.349 1.370  -0.418 1.614  O2     QBT 14 
QBT N3     N3     N 0 1 N N N -26.991 13.699 -21.213 3.278  0.676  1.414  N3     QBT 15 
QBT C4     C4     C 0 1 N N N -26.078 14.492 -21.738 4.184  1.270  0.616  C4     QBT 16 
QBT O4     O4     O 0 1 N N N -25.583 15.372 -21.063 5.112  1.880  1.102  O4     QBT 17 
QBT C5     C5     C 0 1 N N S -25.999 14.601 -23.226 4.045  1.177  -0.882 C5     QBT 18 
QBT C6     C6     C 0 1 N N N -26.364 13.382 -23.974 3.455  -0.191 -1.247 C6     QBT 19 
QBT C5M    C5M    C 0 1 N N N -24.662 15.200 -23.671 5.421  1.328  -1.534 C5M    QBT 20 
QBT O3P    O3P    O 0 1 N Y N -23.055 11.216 -27.163 -4.481 2.251  -1.146 O3P    QBT 21 
QBT H1P    H1P    H 0 1 N N N -24.655 11.048 -29.790 -5.691 -0.286 -0.604 H1P    QBT 22 
QBT "H5'1" "H5'1" H 0 0 N N N -26.275 9.633  -27.512 -1.887 -0.280 1.209  "H5'1" QBT 23 
QBT "H5'2" "H5'2" H 0 0 N N N -25.200 9.410  -26.080 -3.004 -1.501 0.554  "H5'2" QBT 24 
QBT "H4'"  "H4'"  H 0 1 N N N -27.471 8.933  -25.447 -1.464 -1.795 -1.417 "H4'"  QBT 25 
QBT "H3'"  "H3'"  H 0 1 N N N -28.246 10.893 -27.330 -0.397 -2.190 1.436  "H3'"  QBT 26 
QBT "H1'"  "H1'"  H 0 1 N N N -28.815 11.270 -23.498 1.278  -1.338 -2.005 "H1'"  QBT 27 
QBT HA     HA     H 0 1 N N N -29.686 9.795  -25.119 -0.718 -4.456 0.751  HA     QBT 28 
QBT "H2'1" "H2'1" H 0 0 N N N -27.826 12.814 -25.932 1.735  -2.651 0.562  "H2'1" QBT 29 
QBT "H2'2" "H2'2" H 0 0 N N N -29.459 12.475 -25.472 1.062  -3.358 -0.941 "H2'2" QBT 30 
QBT H61C   H61C   H 0 0 N N N -25.466 12.764 -24.122 4.208  -0.965 -1.104 H61C   QBT 31 
QBT H62C   H62C   H 0 0 N N N -26.785 13.669 -24.949 3.135  -0.182 -2.289 H62C   QBT 32 
QBT H3     H3     H 0 1 N N N -27.242 13.814 -20.252 3.336  0.794  2.375  H3     QBT 33 
QBT H52    H52    H 0 1 N N N -24.669 15.344 -24.762 6.079  0.534  -1.181 H52    QBT 34 
QBT H53    H53    H 0 1 N N N -24.512 16.170 -23.175 5.319  1.260  -2.617 H53    QBT 35 
QBT H54    H54    H 0 1 N N N -23.845 14.517 -23.397 5.845  2.296  -1.269 H54    QBT 36 
QBT H3P    H3P    H 0 1 N N N -22.387 11.139 -27.834 -5.228 2.821  -0.918 H3P    QBT 37 
QBT H5M    H5M    H 0 1 N N N -26.796 15.307 -23.502 3.385  1.969  -1.237 H5M    QBT 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
QBT P     O1P    SING N N 1  
QBT P     O2P    DOUB N N 2  
QBT P     "O5'"  SING N N 3  
QBT P     O3P    SING N N 4  
QBT "O5'" "C5'"  SING N N 5  
QBT "C5'" "C4'"  SING N N 6  
QBT "C4'" "O4'"  SING N N 7  
QBT "C4'" "C3'"  SING N N 8  
QBT "O4'" "C1'"  SING N N 9  
QBT "C3'" "O3'"  SING N N 10 
QBT "C3'" "C2'"  SING N N 11 
QBT "C2'" "C1'"  SING N N 12 
QBT "C1'" N1     SING N N 13 
QBT N1    C2     SING N N 14 
QBT N1    C6     SING N N 15 
QBT C2    O2     DOUB N N 16 
QBT C2    N3     SING N N 17 
QBT N3    C4     SING N N 18 
QBT C4    O4     DOUB N N 19 
QBT C4    C5     SING N N 20 
QBT C5    C5M    SING N N 21 
QBT O1P   H1P    SING N N 22 
QBT "C5'" "H5'1" SING N N 23 
QBT "C5'" "H5'2" SING N N 24 
QBT "C4'" "H4'"  SING N N 25 
QBT "C3'" "H3'"  SING N N 26 
QBT "C1'" "H1'"  SING N N 27 
QBT "O3'" HA     SING N N 28 
QBT "C2'" "H2'1" SING N N 29 
QBT "C2'" "H2'2" SING N N 30 
QBT C6    H61C   SING N N 31 
QBT C6    H62C   SING N N 32 
QBT N3    H3     SING N N 33 
QBT C5    C6     SING N N 34 
QBT C5    H5M    SING N N 35 
QBT C5M   H52    SING N N 36 
QBT C5M   H53    SING N N 37 
QBT C5M   H54    SING N N 38 
QBT O3P   H3P    SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
QBT SMILES_CANONICAL CACTVS               3.352 "C[C@H]1CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                     
QBT SMILES           CACTVS               3.352 "C[CH]1CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                          
QBT SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C[C@H]1CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O"                                                                                       
QBT SMILES           "OpenEye OEToolkits" 1.6.1 "CC1CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)O)O"                                                                                                        
QBT InChI            InChI                1.03  "InChI=1S/C10H17N2O8P/c1-5-3-12(10(15)11-9(5)14)8-2-6(13)7(20-8)4-19-21(16,17)18/h5-8,13H,2-4H2,1H3,(H,11,14,15)(H2,16,17,18)/t5-,6-,7+,8+/m0/s1" 
QBT InChIKey         InChI                1.03  PGRQANKWVMVANW-RULNZFCNSA-N                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           QBT 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   1.6.1 
_pdbx_chem_comp_identifier.identifier        "[(2R,3S,5R)-3-hydroxy-5-[(5S)-5-methyl-2,4-dioxo-1,3-diazinan-1-yl]oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
QBT "Create component"       2010-12-08 EBI  
QBT "Modify descriptor"      2011-06-04 RCSB 
QBT "Modify one letter code" 2019-05-03 EBI  
QBT "Modify parent residue"  2022-06-13 RCSB 
# 
