data_O7T
#

_chem_comp.id                                   O7T
_chem_comp.name                                 deltarasin
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C40 H37 N5 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-phenyl-1-[(1~{S})-2-[4-[1-(phenylmethyl)benzimidazol-2-yl]phenoxy]-1-piperidin-4-yl-ethyl]benzimidazole"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-18
_chem_comp.pdbx_modified_date                   2022-06-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       603.755
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    O7T
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6Y3F
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
O7T  C45  C1   C  0  1  Y  N  N  -19.747  -1.390  -18.368  -3.016   3.894   3.622  C45  O7T   1  
O7T  C22  C2   C  0  1  Y  N  N  -22.832  10.158  -16.559   5.302  -4.304   0.628  C22  O7T   2  
O7T  C44  C3   C  0  1  Y  N  N  -19.568  -1.078  -17.015  -3.225   2.528   3.689  C44  O7T   3  
O7T  C46  C4   C  0  1  Y  N  N  -19.911  -0.358  -19.297  -3.234   4.576   2.438  C46  O7T   4  
O7T  C21  C5   C  0  1  Y  N  N  -24.118  10.531  -16.165   6.347  -3.553   1.132  C21  O7T   5  
O7T  C23  C6   C  0  1  Y  N  N  -22.377   8.856  -16.286   4.080  -3.707   0.377  C23  O7T   6  
O7T  C13  C7   C  0  1  Y  N  N  -28.024   9.581  -10.588   8.272   2.276  -1.684  C13  O7T   7  
O7T  C37  C8   C  0  1  Y  N  N  -19.352   7.257  -17.071  -5.978   0.226  -3.730  C37  O7T   8  
O7T  C14  C9   C  0  1  Y  N  N  -28.414   9.519  -11.936   8.529   1.613  -0.493  C14  O7T   9  
O7T  C38  C10  C  0  1  Y  N  N  -18.807   7.037  -15.802  -5.471  -0.970  -3.241  C38  O7T  10  
O7T  C43  C11  C  0  1  Y  N  N  -19.521   0.261  -16.601  -3.647   1.836   2.573  C43  O7T  11  
O7T  C47  C12  C  0  1  Y  N  N  -19.871   0.974  -18.870  -3.663   3.896   1.316  C47  O7T  12  
O7T  C5   C13  C  0  1  Y  N  N  -22.116   6.936  -12.578   1.855   0.428  -1.781  C5   O7T  13  
O7T  C7   C14  C  0  1  Y  N  N  -23.479   4.930  -12.517   1.969   0.673   0.621  C7   O7T  14  
O7T  C20  C15  C  0  1  Y  N  N  -24.944   9.602  -15.504   6.170  -2.206   1.388  C20  O7T  15  
O7T  C24  C16  C  0  1  Y  N  N  -23.213   7.934  -15.636   3.903  -2.361   0.633  C24  O7T  16  
O7T  C12  C17  C  0  1  Y  N  N  -26.830   8.958  -10.169   6.990   2.356  -2.177  C12  O7T  17  
O7T  C36  C18  C  0  1  Y  N  N  -19.730   6.177  -17.890  -5.860   1.380  -3.009  C36  O7T  18  
O7T  C15  C19  C  0  1  Y  N  N  -27.632   8.857  -12.905   7.502   1.024   0.215  C15  O7T  19  
O7T  C39  C20  C  0  1  Y  N  N  -18.653   5.724  -15.331  -4.842  -1.013  -2.015  C39  O7T  20  
O7T  C4   C21  C  0  1  Y  N  N  -20.979   6.159  -12.825   0.511   0.142  -1.683  C4   O7T  21  
O7T  C8   C22  C  0  1  Y  N  N  -22.336   4.153  -12.786   0.626   0.381   0.710  C8   O7T  22  
O7T  C42  C23  C  0  1  Y  N  N  -19.669   1.304  -17.522  -3.864   2.516   1.374  C42  O7T  23  
O7T  C6   C24  C  0  1  Y  N  N  -23.366   6.324  -12.436   2.596   0.693  -0.627  C6   O7T  24  
O7T  C19  C25  C  0  1  Y  N  N  -24.507   8.304  -15.229   4.948  -1.610   1.138  C19  O7T  25  
O7T  C11  C26  C  0  1  Y  N  N  -26.023   8.314  -11.136   5.937   1.761  -1.475  C11  O7T  26  
O7T  C35  C27  C  0  1  Y  N  N  -19.600   4.858  -17.412  -5.221   1.361  -1.765  C35  O7T  27  
O7T  C16  C28  C  0  1  Y  N  N  -26.434   8.276  -12.474   6.203   1.095  -0.266  C16  O7T  28  
O7T  C34  C29  C  0  1  Y  N  N  -19.070   4.654  -16.143  -4.716   0.147  -1.265  C34  O7T  29  
O7T  C3   C30  C  0  1  Y  N  N  -21.083   4.767  -12.948  -0.108   0.117  -0.440  C3   O7T  30  
O7T  C9   C31  C  0  1  Y  N  N  -24.532   7.153  -12.180   4.039   0.995  -0.726  C9   O7T  31  
O7T  C41  C32  C  0  1  Y  N  N  -19.582   2.718  -17.161  -4.323   1.781   0.175  C41  O7T  32  
O7T  C28  C33  C  0  1  N  N  N  -17.182   1.976  -12.893  -2.862  -2.905   1.188  C28  O7T  33  
O7T  C32  C34  C  0  1  N  N  N  -16.390   2.475  -15.282  -5.144  -2.320   0.367  C32  O7T  34  
O7T  C29  C35  C  0  1  N  N  N  -15.727   2.143  -12.426  -3.084  -4.331   0.680  C29  O7T  35  
O7T  C31  C36  C  0  1  N  N  N  -14.974   2.625  -14.726  -5.300  -3.763  -0.118  C31  O7T  36  
O7T  C27  C37  C  0  1  N  N  N  -17.451   2.780  -14.191  -3.665  -1.929   0.324  C27  O7T  37  
O7T  C18  C38  C  0  1  N  N  N  -25.407   7.312  -14.549   4.755  -0.141   1.418  C18  O7T  38  
O7T  C1   C39  C  0  1  N  N  N  -20.025   2.810  -13.819  -2.006  -0.173   0.962  C1   O7T  39  
O7T  C25  C40  C  0  1  N  N  S  -18.836   2.543  -14.760  -3.495  -0.508   0.865  C25  O7T  40  
O7T  N10  N1   N  0  1  Y  N  N  -24.841   7.620  -10.985   4.603   1.670  -1.698  N10  O7T  41  
O7T  N40  N2   N  0  1  Y  N  N  -19.901   3.657  -18.021  -4.956   2.316  -0.840  N40  O7T  42  
O7T  N17  N3   N  0  1  Y  N  N  -25.454   7.548  -13.118   4.986   0.624   0.190  N17  O7T  43  
O7T  N33  N4   N  0  1  Y  N  N  -19.091   3.275  -16.001  -4.151   0.440  -0.039  N33  O7T  44  
O7T  N30  N5   N  0  1  N  N  N  -14.789   1.791  -13.523  -4.514  -4.657   0.741  N30  O7T  45  
O7T  O2   O1   O  0  1  N  N  N  -19.872   4.081  -13.170  -1.433  -0.164  -0.348  O2   O7T  46  
O7T  H1   H1   H  0  1  N  N  N  -19.758  -2.420  -18.692  -2.685   4.431   4.498  H1   O7T  47  
O7T  H2   H2   H  0  1  N  N  N  -22.192  10.863  -17.069   5.442  -5.355   0.424  H2   O7T  48  
O7T  H3   H3   H  0  1  N  N  N  -19.466  -1.870  -16.288  -3.056   2.003   4.617  H3   O7T  49  
O7T  H4   H4   H  0  1  N  N  N  -20.068  -0.588  -20.340  -3.070   5.642   2.391  H4   O7T  50  
O7T  H5   H5   H  0  1  N  N  N  -24.478  11.529  -16.367   7.301  -4.018   1.329  H5   O7T  51  
O7T  H6   H6   H  0  1  N  N  N  -21.379   8.563  -16.578   3.264  -4.294  -0.018  H6   O7T  52  
O7T  H7   H7   H  0  1  N  N  N  -28.639  10.106   -9.872   9.085   2.737  -2.227  H7   O7T  53  
O7T  H8   H8   H  0  1  N  N  N  -19.484   8.268  -17.427  -6.469   0.245  -4.692  H8   O7T  54  
O7T  H9   H9   H  0  1  N  N  N  -29.337   9.991  -12.238   9.540   1.557  -0.117  H9   O7T  55  
O7T  H10  H10  H  0  1  N  N  N  -18.506   7.873  -15.188  -5.570  -1.873  -3.826  H10  O7T  56  
O7T  H11  H11  H  0  1  N  N  N  -19.368   0.490  -15.557  -3.810   0.770   2.627  H11  O7T  57  
O7T  H12  H12  H  0  1  N  N  N  -19.998   1.765  -19.594  -3.833   4.429   0.392  H12  O7T  58  
O7T  H13  H13  H  0  1  N  N  N  -22.029   8.009  -12.497   2.336   0.443  -2.747  H13  O7T  59  
O7T  H14  H14  H  0  1  N  N  N  -24.438   4.454  -12.374   2.539   0.878   1.515  H14  O7T  60  
O7T  H15  H15  H  0  1  N  N  N  -25.938   9.900  -15.203   6.986  -1.619   1.783  H15  O7T  61  
O7T  H16  H16  H  0  1  N  N  N  -22.859   6.931  -15.447   2.948  -1.895   0.438  H16  O7T  62  
O7T  H17  H17  H  0  1  N  N  N  -26.537   8.972   -9.129   6.797   2.878  -3.103  H17  O7T  63  
O7T  H18  H18  H  0  1  N  N  N  -20.118   6.358  -18.881  -6.258   2.305  -3.398  H18  O7T  64  
O7T  H19  H19  H  0  1  N  N  N  -27.945   8.801  -13.937   7.709   0.513   1.144  H19  O7T  65  
O7T  H20  H20  H  0  1  N  N  N  -18.221   5.538  -14.359  -4.450  -1.947  -1.639  H20  O7T  66  
O7T  H21  H21  H  0  1  N  N  N  -20.015   6.635  -12.922  -0.063  -0.063  -2.575  H21  O7T  67  
O7T  H22  H22  H  0  1  N  N  N  -22.423   3.080  -12.868   0.140   0.365   1.675  H22  O7T  68  
O7T  H23  H23  H  0  1  N  N  N  -17.856   2.336  -12.102  -3.194  -2.832   2.224  H23  O7T  69  
O7T  H24  H24  H  0  1  N  N  N  -17.377   0.910  -13.084  -1.802  -2.658   1.128  H24  O7T  70  
O7T  H25  H25  H  0  1  N  N  N  -16.524   3.175  -16.120  -5.716  -1.655  -0.281  H25  O7T  71  
O7T  H26  H26  H  0  1  N  N  N  -16.528   1.444  -15.640  -5.513  -2.238   1.389  H26  O7T  72  
O7T  H27  H27  H  0  1  N  N  N  -15.544   1.482  -11.566  -2.738  -4.407  -0.351  H27  O7T  73  
O7T  H28  H28  H  0  1  N  N  N  -15.560   3.188  -12.127  -2.525  -5.030   1.302  H28  O7T  74  
O7T  H29  H29  H  0  1  N  N  N  -14.251   2.314  -15.494  -6.351  -4.049  -0.075  H29  O7T  75  
O7T  H30  H30  H  0  1  N  N  N  -14.800   3.679  -14.464  -4.944  -3.841  -1.146  H30  O7T  76  
O7T  H31  H31  H  0  1  N  N  N  -17.368   3.848  -13.940  -3.306  -1.973  -0.705  H31  O7T  77  
O7T  H32  H32  H  0  1  N  N  N  -26.422   7.405  -14.962   3.737   0.031   1.767  H32  O7T  78  
O7T  H33  H33  H  0  1  N  N  N  -25.027   6.296  -14.734   5.461   0.179   2.184  H33  O7T  79  
O7T  H34  H34  H  0  1  N  N  N  -20.957   2.811  -14.403  -1.883   0.809   1.418  H34  O7T  80  
O7T  H35  H35  H  0  1  N  N  N  -20.070   2.017  -13.058  -1.503  -0.923   1.572  H35  O7T  81  
O7T  H36  H36  H  0  1  N  N  N  -18.884   1.473  -15.009  -3.948  -0.439   1.854  H36  O7T  82  
O7T  H37  H37  H  0  1  N  N  N  -14.935   0.834  -13.773  -4.850  -4.632   1.692  H37  O7T  83  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
O7T  C46  C47  DOUB  Y  N   1  
O7T  C46  C45  SING  Y  N   2  
O7T  C47  C42  SING  Y  N   3  
O7T  C45  C44  DOUB  Y  N   4  
O7T  N40  C35  SING  Y  N   5  
O7T  N40  C41  DOUB  Y  N   6  
O7T  C36  C35  DOUB  Y  N   7  
O7T  C36  C37  SING  Y  N   8  
O7T  C42  C41  SING  N  N   9  
O7T  C42  C43  DOUB  Y  N  10  
O7T  C35  C34  SING  Y  N  11  
O7T  C41  N33  SING  Y  N  12  
O7T  C37  C38  DOUB  Y  N  13  
O7T  C44  C43  SING  Y  N  14  
O7T  C22  C23  DOUB  Y  N  15  
O7T  C22  C21  SING  Y  N  16  
O7T  C23  C24  SING  Y  N  17  
O7T  C21  C20  DOUB  Y  N  18  
O7T  C34  N33  SING  Y  N  19  
O7T  C34  C39  DOUB  Y  N  20  
O7T  N33  C25  SING  N  N  21  
O7T  C38  C39  SING  Y  N  22  
O7T  C24  C19  DOUB  Y  N  23  
O7T  C20  C19  SING  Y  N  24  
O7T  C32  C31  SING  N  N  25  
O7T  C32  C27  SING  N  N  26  
O7T  C19  C18  SING  N  N  27  
O7T  C25  C27  SING  N  N  28  
O7T  C25  C1   SING  N  N  29  
O7T  C31  N30  SING  N  N  30  
O7T  C18  N17  SING  N  N  31  
O7T  C27  C28  SING  N  N  32  
O7T  C1   O2   SING  N  N  33  
O7T  N30  C29  SING  N  N  34  
O7T  O2   C3   SING  N  N  35  
O7T  N17  C16  SING  Y  N  36  
O7T  N17  C9   SING  Y  N  37  
O7T  C3   C4   DOUB  Y  N  38  
O7T  C3   C8   SING  Y  N  39  
O7T  C15  C16  DOUB  Y  N  40  
O7T  C15  C14  SING  Y  N  41  
O7T  C28  C29  SING  N  N  42  
O7T  C4   C5   SING  Y  N  43  
O7T  C8   C7   DOUB  Y  N  44  
O7T  C5   C6   DOUB  Y  N  45  
O7T  C7   C6   SING  Y  N  46  
O7T  C16  C11  SING  Y  N  47  
O7T  C6   C9   SING  N  N  48  
O7T  C9   N10  DOUB  Y  N  49  
O7T  C14  C13  DOUB  Y  N  50  
O7T  C11  N10  SING  Y  N  51  
O7T  C11  C12  DOUB  Y  N  52  
O7T  C13  C12  SING  Y  N  53  
O7T  C45  H1   SING  N  N  54  
O7T  C22  H2   SING  N  N  55  
O7T  C44  H3   SING  N  N  56  
O7T  C46  H4   SING  N  N  57  
O7T  C21  H5   SING  N  N  58  
O7T  C23  H6   SING  N  N  59  
O7T  C13  H7   SING  N  N  60  
O7T  C37  H8   SING  N  N  61  
O7T  C14  H9   SING  N  N  62  
O7T  C38  H10  SING  N  N  63  
O7T  C43  H11  SING  N  N  64  
O7T  C47  H12  SING  N  N  65  
O7T  C5   H13  SING  N  N  66  
O7T  C7   H14  SING  N  N  67  
O7T  C20  H15  SING  N  N  68  
O7T  C24  H16  SING  N  N  69  
O7T  C12  H17  SING  N  N  70  
O7T  C36  H18  SING  N  N  71  
O7T  C15  H19  SING  N  N  72  
O7T  C39  H20  SING  N  N  73  
O7T  C4   H21  SING  N  N  74  
O7T  C8   H22  SING  N  N  75  
O7T  C28  H23  SING  N  N  76  
O7T  C28  H24  SING  N  N  77  
O7T  C32  H25  SING  N  N  78  
O7T  C32  H26  SING  N  N  79  
O7T  C29  H27  SING  N  N  80  
O7T  C29  H28  SING  N  N  81  
O7T  C31  H29  SING  N  N  82  
O7T  C31  H30  SING  N  N  83  
O7T  C27  H31  SING  N  N  84  
O7T  C18  H32  SING  N  N  85  
O7T  C18  H33  SING  N  N  86  
O7T  C1   H34  SING  N  N  87  
O7T  C1   H35  SING  N  N  88  
O7T  C25  H36  SING  N  N  89  
O7T  N30  H37  SING  N  N  90  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
O7T  InChI             InChI                 1.03   "InChI=1S/C40H37N5O/c1-3-11-29(12-4-1)27-44-36-17-9-7-15-34(36)42-39(44)32-19-21-33(22-20-32)46-28-38(30-23-25-41-26-24-30)45-37-18-10-8-16-35(37)43-40(45)31-13-5-2-6-14-31/h1-22,30,38,41H,23-28H2/t38-/m1/s1"  
O7T  InChIKey          InChI                 1.03   LTZKEDSUXKTTTC-KXQOOQHDSA-N  
O7T  SMILES_CANONICAL  CACTVS                3.385  "C1CC(CCN1)[C@@H](COc2ccc(cc2)c3nc4ccccc4n3Cc5ccccc5)n6c7ccccc7nc6c8ccccc8"  
O7T  SMILES            CACTVS                3.385  "C1CC(CCN1)[CH](COc2ccc(cc2)c3nc4ccccc4n3Cc5ccccc5)n6c7ccccc7nc6c8ccccc8"  
O7T  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)Cn2c3ccccc3nc2c4ccc(cc4)OC[C@H](C5CCNCC5)n6c7ccccc7nc6c8ccccc8"  
O7T  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)Cn2c3ccccc3nc2c4ccc(cc4)OCC(C5CCNCC5)n6c7ccccc7nc6c8ccccc8"  
#
_pdbx_chem_comp_identifier.comp_id          O7T
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2-phenyl-1-[(1~{S})-2-[4-[1-(phenylmethyl)benzimidazol-2-yl]phenoxy]-1-piperidin-4-yl-ethyl]benzimidazole"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     O7T
_pdbx_chem_comp_synonyms.name        "2-phenyl-1-[(1~{S})-2-[4-[1-(phenylmethyl)benzimidazol-2-yl]phenoxy]-1-piperidin-4-yl-ethyl]benzimidazole"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
O7T  "Create component"  2020-02-18  PDBE  
O7T  "Modify synonyms"   2020-06-05  PDBE  
O7T  "Initial release"   2022-06-08  RCSB  
##
