data_M8T
#

_chem_comp.id                                   M8T
_chem_comp.name                                 "2'-fluoro-,3',3'-c-di-AMP"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H22 F2 N10 O10 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-10-07
_chem_comp.pdbx_modified_date                   2021-05-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       662.394
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    M8T
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6T1X
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M8T  N     N1   N  0  1  Y  N  N  11.598  -13.598  174.078   -9.916  -0.657  -0.146  N     M8T   1  
M8T  C     C1   C  0  1  Y  N  N  10.914  -12.784  174.904   -9.114  -1.321   0.666  C     M8T   2  
M8T  O     O1   O  0  1  N  N  N   7.747  -10.525  167.372    0.740   2.238  -1.386  O     M8T   3  
M8T  C1    C2   C  0  1  Y  N  N   9.308  -12.251  173.280   -7.310   0.000   0.135  C1    M8T   4  
M8T  C10   C3   C  0  1  Y  N  N  12.776  -10.956  165.261    9.116   1.305   0.646  C10   M8T   5  
M8T  C11   C4   C  0  1  Y  N  N  12.249   -9.328  166.866    7.308  -0.018   0.134  C11   M8T   6  
M8T  C12   C5   C  0  1  Y  N  N  13.106  -10.015  167.837    8.119  -0.773  -0.730  C12   M8T   7  
M8T  C13   C6   C  0  1  Y  N  N  13.793  -11.242  167.373    9.471  -0.411  -0.856  C13   M8T   8  
M8T  C14   C7   C  0  1  Y  N  N  12.210   -8.242  168.753    6.127  -1.626  -0.805  C14   M8T   9  
M8T  C15   C8   C  0  1  N  N  R   8.746   -7.796  167.894    2.678   0.634   0.041  C15   M8T  10  
M8T  C16   C9   C  0  1  N  N  R   9.504   -8.025  166.601    4.174   0.997   0.022  C16   M8T  11  
M8T  C17   C10  C  0  1  N  N  R  10.813   -7.298  166.871    4.868  -0.135   0.795  C17   M8T  12  
M8T  C18   C11  C  0  1  N  N  R   9.128   -6.353  168.207    2.603  -0.714   0.773  C18   M8T  13  
M8T  C19   C12  C  0  1  N  N  N   8.970   -5.988  169.672    1.759  -1.699  -0.038  C19   M8T  14  
M8T  C2    C13  C  0  1  Y  N  N   9.997  -13.118  172.320   -8.122   0.737  -0.743  C2    M8T  15  
M8T  C3    C14  C  0  1  Y  N  N  11.214  -13.813  172.800   -9.473   0.369  -0.865  C3    M8T  16  
M8T  C4    C15  C  0  1  Y  N  N   8.241  -12.210  171.382   -6.133   1.596  -0.828  C4    M8T  17  
M8T  C5    C16  C  0  1  N  N  R   7.792   -8.736  172.213   -2.678  -0.635   0.059  C5    M8T  18  
M8T  C6    C17  C  0  1  N  N  R   8.027   -9.490  173.509   -4.172  -1.005   0.047  C6    M8T  19  
M8T  C7    C18  C  0  1  N  N  R   7.293  -10.798  173.253   -4.871   0.137   0.799  C7    M8T  20  
M8T  C8    C19  C  0  1  N  N  R   6.351   -9.125  171.899   -2.609   0.723   0.772  C8    M8T  21  
M8T  C9    C20  C  0  1  N  N  N   5.988   -8.972  170.433   -1.766   1.699  -0.052  C9    M8T  22  
M8T  F6    F1   F  0  1  N  N  N   8.838   -7.451  165.559    4.385   2.223   0.662  F6    M8T  23  
M8T  F9    F2   F  0  1  N  N  N   7.470   -8.821  174.558   -4.378  -2.221   0.708  F9    M8T  24  
M8T  N1    N2   N  0  1  Y  N  N   9.805  -12.127  174.530   -7.843  -1.011   0.813  N1    M8T  25  
M8T  N2    N3   N  0  1  Y  N  N   8.256  -11.741  172.644   -6.062   0.565   0.060  N2    M8T  26  
M8T  N3    N4   N  0  1  Y  N  N   9.291  -13.050  171.175   -7.342   1.696  -1.298  N3    M8T  27  
M8T  N4    N5   N  0  1  Y  N  N  13.580  -11.638  166.098    9.918   0.625  -0.154  N4    M8T  28  
M8T  N5    N6   N  0  1  Y  N  N  12.126   -9.837  165.620    7.844   1.003   0.795  N5    M8T  29  
M8T  N6    N7   N  0  1  Y  N  N  11.746   -8.265  167.489    6.058  -0.579   0.066  N6    M8T  30  
M8T  N7    N8   N  0  1  Y  N  N  13.039   -9.297  168.974    7.337  -1.738  -1.271  N7    M8T  31  
M8T  N9    N9   N  0  1  N  N  N  14.606  -11.946  168.196   10.318  -1.118  -1.692  N9    M8T  32  
M8T  O1    O2   O  0  1  N  N  N   6.222  -10.483  172.353   -3.943   1.220   0.893  O1    M8T  33  
M8T  O10   O3   O  0  1  N  N  N   8.030   -7.350  172.363   -1.931  -1.615   0.783  O10   M8T  34  
M8T  O2    O4   O  0  1  N  N  N   6.823   -9.780  169.612   -0.644   2.130   0.722  O2    M8T  35  
M8T  O22   O5   O  0  1  N  N  N  10.516   -7.743  172.738   -0.748  -2.244  -1.479  O22   M8T  36  
M8T  O3    O6   O  0  1  N  N  N   5.413   -9.666  167.496    1.079   4.074   0.313  O3    M8T  37  
M8T  O4    O7   O  0  1  N  N  N   9.663   -5.407  172.614   -1.064  -3.947   0.357  O4    M8T  38  
M8T  O5    O8   O  0  1  N  N  N  10.491   -6.227  167.769    3.935  -1.212   0.905  O5    M8T  39  
M8T  O7    O9   O  0  1  N  N  N   7.361   -8.035  167.733    1.936   1.627   0.751  O7    M8T  40  
M8T  O8    O10  O  0  1  N  N  N   9.785   -6.814  170.495    0.646  -2.132   0.747  O8    M8T  41  
M8T  P     P1   P  0  1  N  N  N   6.821   -9.527  168.024    0.777   2.511   0.068  P     M8T  42  
M8T  P1    P2   P  0  1  N  N  N   9.524   -6.814  172.082   -0.780  -2.516   0.107  P1    M8T  43  
M8T  N10   N10  N  0  1  N  N  N  11.917  -14.635  171.987  -10.321   1.058  -1.715  111   M8T  44  
M8T  H     H1   H  0  1  N  N  N  11.274  -12.654  175.914   -9.516  -2.148   1.233  H     M8T  45  
M8T  H10   H2   H  0  1  N  N  N  12.648  -11.326  164.254    9.521   2.137   1.202  H10   M8T  46  
M8T  H14   H3   H  0  1  N  N  N  11.959   -7.491  169.488    5.299  -2.267  -1.069  H14   M8T  47  
M8T  H15   H4   H  0  1  N  N  N   9.161   -8.452  168.674    2.299   0.534  -0.976  H15   M8T  48  
M8T  H16   H5   H  0  1  N  N  N   9.688   -9.099  166.450    4.542   1.037  -1.003  H16   M8T  49  
M8T  H17   H6   H  0  1  N  N  N  11.228   -6.913  165.928    5.151   0.214   1.788  H17   M8T  50  
M8T  H18   H7   H  0  1  N  N  N   8.487   -5.687  167.611    2.161  -0.574   1.760  H18   M8T  51  
M8T  H191  H8   H  0  0  N  N  N   9.263   -4.937  169.814    1.397  -1.208  -0.942  H191  M8T  52  
M8T  H192  H9   H  0  0  N  N  N   7.917   -6.117  169.963    2.368  -2.560  -0.312  H192  M8T  53  
M8T  H4    H10  H  0  1  N  N  N   7.500  -11.955  170.639   -5.307   2.237  -1.101  H4    M8T  54  
M8T  H5    H11  H  0  1  N  N  N   8.448   -9.153  171.435   -2.301  -0.548  -0.960  H5    M8T  55  
M8T  H6    H12  H  0  1  N  N  N   9.101   -9.679  173.650   -4.539  -1.065  -0.978  H6    M8T  56  
M8T  H7    H13  H  0  1  N  N  N   6.908  -11.202  174.201   -5.155  -0.196   1.797  H7    M8T  57  
M8T  H8    H14  H  0  1  N  N  N   5.684   -8.479  172.489   -2.169   0.599   1.762  H8    M8T  58  
M8T  H91   H15  H  0  1  N  N  N   6.108   -7.918  170.141   -1.414   1.201  -0.955  H91   M8T  59  
M8T  H92   H16  H  0  1  N  N  N   4.940   -9.275  170.289   -2.372   2.562  -0.325  H92   M8T  60  
M8T  HN9   H17  H  0  1  N  N  N  14.973  -12.737  167.706    9.981  -1.872  -2.199  HN9   M8T  61  
M8T  H1    H18  H  0  1  N  N  N  15.359  -11.362  168.499   11.250  -0.858  -1.770  H1    M8T  62  
M8T  H2    H19  H  0  1  N  N  N  11.040   -7.257  173.364   -0.077  -2.755  -1.952  H2    M8T  63  
M8T  H3    H20  H  0  1  N  N  N   5.384  -10.362  166.850    0.420   4.667  -0.072  H3    M8T  64  
M8T  H111  H21  H  0  0  N  N  N  12.699  -15.009  172.486   -9.985   1.804  -2.234  H111  M8T  65  
M8T  H9    H22  H  0  1  N  N  N  11.329  -15.383  171.681  -11.251   0.793  -1.790  H9    M8T  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M8T  C10  N5    DOUB  Y  N   1  
M8T  C10  N4    SING  Y  N   2  
M8T  F6   C16   SING  N  N   3  
M8T  N5   C11   SING  Y  N   4  
M8T  N4   C13   DOUB  Y  N   5  
M8T  C16  C17   SING  N  N   6  
M8T  C16  C15   SING  N  N   7  
M8T  C11  N6    SING  Y  N   8  
M8T  C11  C12   DOUB  Y  N   9  
M8T  C17  N6    SING  N  N  10  
M8T  C17  O5    SING  N  N  11  
M8T  O    P     DOUB  N  N  12  
M8T  C13  C12   SING  Y  N  13  
M8T  C13  N9    SING  N  N  14  
M8T  N6   C14   SING  Y  N  15  
M8T  O3   P     SING  N  N  16  
M8T  O7   C15   SING  N  N  17  
M8T  O7   P     SING  N  N  18  
M8T  O5   C18   SING  N  N  19  
M8T  C12  N7    SING  Y  N  20  
M8T  C15  C18   SING  N  N  21  
M8T  P    O2    SING  N  N  22  
M8T  C18  C19   SING  N  N  23  
M8T  C14  N7    DOUB  Y  N  24  
M8T  O2   C9    SING  N  N  25  
M8T  C19  O8    SING  N  N  26  
M8T  C9   C8    SING  N  N  27  
M8T  O8   P1    SING  N  N  28  
M8T  N3   C4    DOUB  Y  N  29  
M8T  N3   C2    SING  Y  N  30  
M8T  C4   N2    SING  Y  N  31  
M8T  C8   C5    SING  N  N  32  
M8T  C8   O1    SING  N  N  33  
M8T  N10  C3    SING  N  N  34  
M8T  P1   O10   SING  N  N  35  
M8T  P1   O4    DOUB  N  N  36  
M8T  P1   O22   SING  N  N  37  
M8T  C5   O10   SING  N  N  38  
M8T  C5   C6    SING  N  N  39  
M8T  C2   C3    DOUB  Y  N  40  
M8T  C2   C1    SING  Y  N  41  
M8T  O1   C7    SING  N  N  42  
M8T  N2   C7    SING  N  N  43  
M8T  N2   C1    SING  Y  N  44  
M8T  C3   N     SING  Y  N  45  
M8T  C7   C6    SING  N  N  46  
M8T  C1   N1    DOUB  Y  N  47  
M8T  C6   F9    SING  N  N  48  
M8T  N    C     DOUB  Y  N  49  
M8T  N1   C     SING  Y  N  50  
M8T  C    H     SING  N  N  51  
M8T  C10  H10   SING  N  N  52  
M8T  C14  H14   SING  N  N  53  
M8T  C15  H15   SING  N  N  54  
M8T  C16  H16   SING  N  N  55  
M8T  C17  H17   SING  N  N  56  
M8T  C18  H18   SING  N  N  57  
M8T  C19  H191  SING  N  N  58  
M8T  C19  H192  SING  N  N  59  
M8T  C4   H4    SING  N  N  60  
M8T  C5   H5    SING  N  N  61  
M8T  C6   H6    SING  N  N  62  
M8T  C7   H7    SING  N  N  63  
M8T  C8   H8    SING  N  N  64  
M8T  C9   H91   SING  N  N  65  
M8T  C9   H92   SING  N  N  66  
M8T  N9   HN9   SING  N  N  67  
M8T  N9   H1    SING  N  N  68  
M8T  O22  H2    SING  N  N  69  
M8T  O3   H3    SING  N  N  70  
M8T  N10  H111  SING  N  N  71  
M8T  N10  H9    SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M8T  InChI             InChI                 1.03   "InChI=1S/C20H22F2N10O10P2/c21-9-13-7(39-19(9)31-5-29-11-15(23)25-3-27-17(11)31)1-37-43(33,34)42-14-8(2-38-44(35,36)41-13)40-20(10(14)22)32-6-30-12-16(24)26-4-28-18(12)32/h3-10,13-14,19-20H,1-2H2,(H,33,34)(H,35,36)(H2,23,25,27)(H2,24,26,28)/t7-,8-,9-,10-,13-,14-,19-,20-/m1/s1"  
M8T  InChIKey          InChI                 1.03   LMPBRGUYJGJYOI-QPMBAPTHSA-N  
M8T  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](F)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@H]4[C@H]3F)n6cnc7c(N)ncnc67"  
M8T  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](F)[CH](O[CH]5CO[P](O)(=O)O[CH]4[CH]3F)n6cnc7c(N)ncnc67"  
M8T  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(O[C@@H]5[C@@H](COP(=O)(O4)O)O[C@H]([C@@H]5F)n6cnc7c6ncnc7N)O)F)N"  
M8T  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(COP(=O)(O4)O)OC(C5F)n6cnc7c6ncnc7N)O)F)N"  
#
_pdbx_chem_comp_identifier.comp_id          M8T
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]purin-6-amine"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M8T  "Create component"  2019-10-07  PDBE  
M8T  "Initial release"   2021-05-19  RCSB  
##
