data_M5T
# 
_chem_comp.id                                    M5T 
_chem_comp.name                                  "5-Methyluridine triphosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H17 N2 O15 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-09-28 
_chem_comp.pdbx_modified_date                    2018-05-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        498.168 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     M5T 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5TFG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
M5T C15 C1  C 0 1 N N N 93.707 18.386 -12.960 0.924  2.441  -0.179 C15 M5T 1  
M5T C10 C2  C 0 1 N N R 96.444 19.102 -11.205 3.797  0.547  0.864  C10 M5T 2  
M5T C11 C3  C 0 1 N N R 96.541 17.560 -11.835 4.386  1.757  0.095  C11 M5T 3  
M5T C12 C4  C 0 1 N N S 96.132 17.684 -13.034 3.339  2.862  0.376  C12 M5T 4  
M5T C13 C5  C 0 1 N N R 95.025 18.835 -13.018 2.068  2.085  0.772  C13 M5T 5  
M5T C01 C6  C 0 1 N N N 93.644 18.082 -7.372  6.324  -3.658 1.347  C01 M5T 6  
M5T C02 C7  C 0 1 N N N 94.951 18.647 -7.925  5.484  -2.717 0.524  C02 M5T 7  
M5T C03 C8  C 0 1 N N N 95.170 18.639 -9.285  5.040  -1.556 1.052  C03 M5T 8  
M5T N04 N1  N 0 1 N N N 96.296 19.114 -9.783  4.278  -0.712 0.291  N04 M5T 9  
M5T C05 C9  C 0 1 N N N 97.232 19.616 -8.975  3.966  -1.028 -0.979 C05 M5T 10 
M5T O06 O1  O 0 1 N N N 98.238 20.047 -9.428  3.288  -0.264 -1.638 O06 M5T 11 
M5T N07 N2  N 0 1 N N N 97.070 19.643 -7.660  4.395  -2.179 -1.531 N07 M5T 12 
M5T C08 C10 C 0 1 N N N 95.958 19.170 -7.112  5.153  -3.034 -0.816 C08 M5T 13 
M5T O09 O2  O 0 1 N N N 95.819 19.205 -5.931  5.547  -4.073 -1.316 O09 M5T 14 
M5T O14 O3  O 0 1 N N N 95.380 19.638 -11.746 2.373  0.683  0.671  O14 M5T 15 
M5T O16 O4  O 0 1 N N N 93.643 17.419 -11.956 -0.278 1.808  0.264  O16 M5T 16 
M5T P17 P1  P 0 1 N N N 92.237 16.966 -11.242 -1.686 1.964  -0.502 P17 M5T 17 
M5T O18 O5  O 0 1 N N N 91.405 18.171 -10.902 -1.522 1.570  -1.919 O18 M5T 18 
M5T O19 O6  O 0 1 N N N 92.616 16.114 -10.061 -2.172 3.496  -0.424 O19 M5T 19 
M5T O20 O7  O 0 1 N N N 91.456 16.118 -12.393 -2.784 1.015  0.195  O20 M5T 20 
M5T P21 P2  P 0 1 N N N 90.138 15.174 -12.211 -4.194 0.400  -0.281 P21 M5T 21 
M5T O22 O8  O 0 1 N N N 89.629 15.222 -10.797 -5.315 1.555  -0.269 O22 M5T 22 
M5T O23 O9  O 0 1 N N N 89.146 15.672 -13.230 -4.058 -0.142 -1.651 O23 M5T 23 
M5T O24 O10 O 0 1 N N N 90.706 13.725 -12.666 -4.629 -0.781 0.723  O24 M5T 24 
M5T P25 P3  P 0 1 N N N 90.246 12.266 -12.112 -5.647 -2.024 0.612  P25 M5T 25 
M5T O26 O11 O 0 1 N N N 91.352 11.329 -12.513 -6.036 -2.532 2.090  O26 M5T 26 
M5T O27 O12 O 0 1 N N N 88.977 11.824 -12.795 -6.872 -1.597 -0.100 O27 M5T 27 
M5T O28 O13 O 0 1 N N N 90.064 12.347 -10.611 -4.944 -3.223 -0.200 O28 M5T 28 
M5T O29 O14 O 0 1 N N N 97.267 18.146 -13.892 3.768  3.700  1.451  O29 M5T 29 
M5T O30 O15 O 0 1 N N N 97.918 17.083 -11.758 5.665  2.121  0.620  O30 M5T 30 
M5T H1  H1  H 0 1 N N N 93.034 19.223 -12.720 0.782  3.522  -0.189 H1  M5T 31 
M5T H2  H2  H 0 1 N N N 93.416 17.946 -13.925 1.166  2.097  -1.184 H2  M5T 32 
M5T H3  H3  H 0 1 N N N 97.365 19.629 -11.494 4.048  0.606  1.923  H3  M5T 33 
M5T H4  H4  H 0 1 N N N 95.889 16.917 -11.225 4.452  1.545  -0.972 H4  M5T 34 
M5T H5  H5  H 0 1 N N N 95.688 16.768 -13.452 3.161  3.453  -0.522 H5  M5T 35 
M5T H6  H6  H 0 1 N N N 95.184 19.476 -13.898 1.788  2.330  1.797  H6  M5T 36 
M5T H7  H7  H 0 1 N N N 93.641 18.169 -6.275  6.585  -4.530 0.747  H7  M5T 37 
M5T H8  H8  H 0 1 N N N 92.796 18.646 -7.787  7.234  -3.150 1.665  H8  M5T 38 
M5T H9  H9  H 0 1 N N N 93.553 17.023 -7.656  5.760  -3.977 2.224  H9  M5T 39 
M5T H10 H10 H 0 1 N N N 94.416 18.242 -9.948  5.285  -1.295 2.071  H10 M5T 40 
M5T H11 H11 H 0 1 N N N 97.789 20.022 -7.078  4.161  -2.391 -2.448 H11 M5T 41 
M5T H12 H12 H 0 1 N N N 92.254 16.492 -9.268  -2.300 3.823  0.477  H12 M5T 42 
M5T H13 H13 H 0 1 N N N 88.744 15.568 -10.790 -5.458 1.956  0.599  H13 M5T 43 
M5T H14 H14 H 0 1 N N N 91.010 10.669 -13.105 -6.648 -3.281 2.100  H14 M5T 44 
M5T H15 H15 H 0 1 N N N 89.175 12.101 -10.386 -4.134 -3.554 0.210  H15 M5T 45 
M5T H16 H16 H 0 1 N N N 97.939 17.475 -13.916 4.565  4.212  1.257  H16 M5T 46 
M5T H17 H17 H 0 1 N N N 98.177 17.007 -10.847 6.074  2.874  0.171  H17 M5T 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
M5T O29 C12 SING N N 1  
M5T O23 P21 DOUB N N 2  
M5T C12 C13 SING N N 3  
M5T C12 C11 SING N N 4  
M5T C13 C15 SING N N 5  
M5T C13 O14 SING N N 6  
M5T C15 O16 SING N N 7  
M5T O27 P25 DOUB N N 8  
M5T O24 P21 SING N N 9  
M5T O24 P25 SING N N 10 
M5T O26 P25 SING N N 11 
M5T O20 P21 SING N N 12 
M5T O20 P17 SING N N 13 
M5T P21 O22 SING N N 14 
M5T P25 O28 SING N N 15 
M5T O16 P17 SING N N 16 
M5T C11 O30 SING N N 17 
M5T C11 C10 SING N N 18 
M5T O14 C10 SING N N 19 
M5T P17 O18 DOUB N N 20 
M5T P17 O19 SING N N 21 
M5T C10 N04 SING N N 22 
M5T N04 C03 SING N N 23 
M5T N04 C05 SING N N 24 
M5T O06 C05 DOUB N N 25 
M5T C03 C02 DOUB N N 26 
M5T C05 N07 SING N N 27 
M5T C02 C01 SING N N 28 
M5T C02 C08 SING N N 29 
M5T N07 C08 SING N N 30 
M5T C08 O09 DOUB N N 31 
M5T C15 H1  SING N N 32 
M5T C15 H2  SING N N 33 
M5T C10 H3  SING N N 34 
M5T C11 H4  SING N N 35 
M5T C12 H5  SING N N 36 
M5T C13 H6  SING N N 37 
M5T C01 H7  SING N N 38 
M5T C01 H8  SING N N 39 
M5T C01 H9  SING N N 40 
M5T C03 H10 SING N N 41 
M5T N07 H11 SING N N 42 
M5T O19 H12 SING N N 43 
M5T O22 H13 SING N N 44 
M5T O26 H14 SING N N 45 
M5T O28 H15 SING N N 46 
M5T O29 H16 SING N N 47 
M5T O30 H17 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
M5T SMILES           ACDLabs              12.01 "C(OP(=O)(O)OP(O)(=O)OP(O)(O)=O)C2C(C(C(N1C=C(C)C(NC1=O)=O)O2)O)O"                                                                                                                                    
M5T InChI            InChI                1.03  "InChI=1S/C10H17N2O15P3/c1-4-2-12(10(16)11-8(4)15)9-7(14)6(13)5(25-9)3-24-29(20,21)27-30(22,23)26-28(17,18)19/h2,5-7,9,13-14H,3H2,1H3,(H,20,21)(H,22,23)(H,11,15,16)(H2,17,18,19)/t5-,6-,7-,9-/m1/s1" 
M5T InChIKey         InChI                1.03  RZCIEJXAILMSQK-JXOAFFINSA-N                                                                                                                                                                           
M5T SMILES_CANONICAL CACTVS               3.385 "CC1=CN([C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=O)NC1=O"                                                                                                                
M5T SMILES           CACTVS               3.385 "CC1=CN([CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O)C(=O)NC1=O"                                                                                                                      
M5T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O"                                                                                                                    
M5T SMILES           "OpenEye OEToolkits" 2.0.6 "CC1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O"                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
M5T "SYSTEMATIC NAME" ACDLabs              12.01 
;5-methyluridine 5'-(tetrahydrogen triphosphate)
;
M5T "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2~{R},3~{S},4~{R},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
M5T "Create component" 2016-09-28 RCSB 
M5T "Initial release"  2018-05-09 RCSB 
# 
