data_KYT
# 
_chem_comp.id                                    KYT 
_chem_comp.name                                  "(3AS,4S,6AR)-4-(5-((3R,4R)-3,4-DIAMINOPYRROLIDIN-1-YL)-5-OXOPENTYL)TETRAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-2(3H)-ONE-P-CYMENE-CHLORO-RUTHENIUM(III)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H39 Cl N5 O2 Ru S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2009-08-10 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        598.187 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KYT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2WPU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KYT CL1  CL1  CL 0 0 N N N 5.617  -4.982  2.805  5.617  -4.982  2.805  CL1  KYT 1  
KYT RU1  RU1  RU 1 0 N N N 3.890  -5.979  0.796  3.890  -5.979  0.796  RU1  KYT 2  
KYT N1   N1   N  0 1 N N N 5.241  -7.679  1.273  5.241  -7.679  1.273  N1   KYT 3  
KYT C1   C1   C  0 1 N N R 6.107  -7.724  0.098  6.107  -7.724  0.098  C1   KYT 4  
KYT C2   C2   C  0 1 N N N 7.365  -8.604  0.127  7.365  -8.604  0.127  C2   KYT 5  
KYT C3   C3   C  0 1 Y N N 2.268  -4.617  0.400  2.268  -4.617  0.400  C3   KYT 6  
KYT C4   C4   C  0 1 N N N 2.239  -3.139  0.371  2.239  -3.139  0.371  C4   KYT 7  
KYT C5   C5   C  0 1 N N N 3.506  -2.493  -0.261 3.506  -2.493  -0.261 C5   KYT 8  
KYT C6   C6   C  0 1 N N N 0.936  -2.613  -0.294 0.936  -2.613  -0.294 C6   KYT 9  
KYT C7   C7   C  0 1 Y N N 1.989  -5.303  1.575  1.989  -5.303  1.575  C7   KYT 10 
KYT C8   C8   C  0 1 Y N N 2.016  -6.653  1.629  2.016  -6.653  1.629  C8   KYT 11 
KYT C9   C9   C  0 1 Y N N 2.242  -7.395  0.484  2.242  -7.395  0.484  C9   KYT 12 
KYT C10  C10  C  0 1 N N N 2.184  -8.856  0.507  2.184  -8.856  0.507  C10  KYT 13 
KYT C11  C11  C  0 1 Y N N 2.490  -5.362  -0.717 2.490  -5.362  -0.717 C11  KYT 14 
KYT C12  C12  C  0 1 Y N N 2.502  -6.739  -0.675 2.502  -6.739  -0.675 C12  KYT 15 
KYT N2   N2   N  0 1 N N N 5.611  -5.433  -0.534 5.611  -5.433  -0.534 N2   KYT 16 
KYT C13  C13  C  0 1 N N R 6.693  -6.327  -0.111 6.693  -6.327  -0.111 C13  KYT 17 
KYT C14  C14  C  0 1 N N N 7.851  -6.622  -1.078 7.851  -6.622  -1.078 C14  KYT 18 
KYT N3   N3   N  0 1 N N N 8.243  -7.935  -0.746 8.243  -7.935  -0.746 N3   KYT 19 
KYT C15  C15  C  0 1 N N N 9.335  -8.484  -1.227 9.335  -8.484  -1.227 C15  KYT 20 
KYT O1   O1   O  0 1 N N N 9.503  -8.470  -2.440 9.503  -8.470  -2.440 O1   KYT 21 
KYT C16  C16  C  0 1 N N N 10.330 -9.123  -0.367 10.330 -9.123  -0.367 C16  KYT 22 
KYT C17  C17  C  0 1 N N N 11.745 -9.321  -0.987 11.745 -9.321  -0.987 C17  KYT 23 
KYT C18  C18  C  0 1 N N N 12.731 -10.030 -0.018 12.731 -10.030 -0.018 C18  KYT 24 
KYT C19  C19  C  0 1 N N N 14.184 -10.107 -0.564 14.184 -10.107 -0.564 C19  KYT 25 
KYT C20  C20  C  0 1 N N S 15.164 -10.813 0.418  15.164 -10.813 0.418  C20  KYT 26 
KYT C21  C21  C  0 1 N N S 16.550 -11.208 -0.163 16.550 -11.208 -0.163 C21  KYT 27 
KYT N4   N4   N  0 1 N N N 17.100 -10.286 -1.038 17.100 -10.286 -1.038 N4   KYT 28 
KYT S1   S1   S  0 1 N N N 15.610 -9.803  1.870  15.610 -9.803  1.870  S1   KYT 29 
KYT C22  C22  C  0 1 N N N 17.131 -10.707 2.301  17.131 -10.707 2.301  C22  KYT 30 
KYT C23  C23  C  0 1 N N R 17.647 -11.260 0.945  17.647 -11.260 0.945  C23  KYT 31 
KYT N5   N5   N  0 1 N N N 18.625 -10.449 0.396  18.625 -10.449 0.396  N5   KYT 32 
KYT C24  C24  C  0 1 N N N 18.264 -9.902  -0.694 18.264 -9.902  -0.694 C24  KYT 33 
KYT O2   O2   O  0 1 N N N 18.948 -9.119  -1.331 18.948 -9.119  -1.331 O2   KYT 34 
KYT HAF1 HAF1 H  0 0 N N N 4.718  -8.549  1.380  4.718  -8.549  1.380  HAF1 KYT 35 
KYT HAF2 HAF2 H  0 0 N N N 5.783  -7.470  2.112  5.783  -7.470  2.112  HAF2 KYT 36 
KYT H1   H1   H  0 1 N N N 1.754  -4.803  2.403  1.754  -4.803  2.403  H1   KYT 37 
KYT H2   H2   H  0 1 N N N 1.808  -7.104  2.489  1.808  -7.104  2.489  H2   KYT 38 
KYT H5   H5   H  0 1 N N N 2.647  -4.920  -1.594 2.647  -4.920  -1.594 H5   KYT 39 
KYT H4   H4   H  0 1 N N N 2.676  -7.247  -1.514 2.676  -7.247  -1.514 H4   KYT 40 
KYT HAI1 HAI1 H  0 0 N N N 5.366  -5.612  -1.509 5.366  -5.612  -1.509 HAI1 KYT 41 
KYT HAI2 HAI2 H  0 0 N N N 5.880  -4.454  -0.410 5.880  -4.454  -0.410 HAI2 KYT 42 
KYT HAE  HAE  H  0 1 N N N 5.490  -8.007  -0.764 5.490  -8.007  -0.764 HAE  KYT 43 
KYT HAD1 HAD1 H  0 0 N N N 7.780  -8.657  1.138  7.780  -8.657  1.138  HAD1 KYT 44 
KYT HAD2 HAD2 H  0 0 N N N 7.124  -9.613  -0.217 7.124  -9.613  -0.217 HAD2 KYT 45 
KYT HAH  HAH  H  0 1 N N N 7.098  -5.936  0.830  7.098  -5.936  0.830  HAH  KYT 46 
KYT H10  H10  H  0 1 N N N 2.219  -2.758  1.399  2.219  -2.758  1.399  H10  KYT 47 
KYT H81C H81C H  0 0 N N N 3.487  -1.411  -0.109 3.487  -1.411  -0.109 H81C KYT 48 
KYT H82C H82C H  0 0 N N N 4.411  -2.877  0.213  4.411  -2.877  0.213  H82C KYT 49 
KYT H83C H83C H  0 0 N N N 3.559  -2.685  -1.335 3.559  -2.685  -1.335 H83C KYT 50 
KYT H71C H71C H  0 0 N N N 0.897  -1.523  -0.239 0.897  -1.523  -0.239 H71C KYT 51 
KYT H72C H72C H  0 0 N N N 0.880  -2.907  -1.344 0.880  -2.907  -1.344 H72C KYT 52 
KYT H73C H73C H  0 0 N N N 0.060  -3.007  0.227  0.060  -3.007  0.227  H73C KYT 53 
KYT H91C H91C H  0 0 N N N 1.280  -9.195  -0.002 1.280  -9.195  -0.002 H91C KYT 54 
KYT H92C H92C H  0 0 N N N 3.050  -9.284  -0.002 3.050  -9.284  -0.002 H92C KYT 55 
KYT H93C H93C H  0 0 N N N 2.171  -9.256  1.523  2.171  -9.256  1.523  H93C KYT 56 
KYT HAG1 HAG1 H  0 0 N N N 8.663  -5.905  -0.925 8.663  -5.905  -0.925 HAG1 KYT 57 
KYT HAG2 HAG2 H  0 0 N N N 7.511  -6.562  -2.117 7.511  -6.562  -2.117 HAG2 KYT 58 
KYT H401 H401 H  0 0 N N N 9.942  -10.100 -0.065 9.942  -10.100 -0.065 H401 KYT 59 
KYT H402 H402 H  0 0 N N N 10.444 -8.513  0.535  10.444 -8.513  0.535  H402 KYT 60 
KYT H451 H451 H  0 0 N N N 12.150 -8.344  -1.261 12.150 -8.344  -1.261 H451 KYT 61 
KYT H452 H452 H  0 0 N N N 11.666 -9.921  -1.898 11.666 -9.921  -1.898 H452 KYT 62 
KYT H461 H461 H  0 0 N N N 12.368 -11.046 0.164  12.368 -11.046 0.164  H461 KYT 63 
KYT H462 H462 H  0 0 N N N 12.738 -9.497  0.935  12.738 -9.497  0.935  H462 KYT 64 
KYT H471 H471 H  0 0 N N N 14.546 -9.097  -0.778 14.546 -9.097  -0.778 H471 KYT 65 
KYT H472 H472 H  0 0 N N N 14.171 -10.667 -1.502 14.171 -10.667 -1.502 H472 KYT 66 
KYT H48  H48  H  0 1 N N N 14.700 -11.728 0.796  14.700 -11.728 0.796  H48  KYT 67 
KYT H49  H49  H  0 1 N N N 16.471 -12.167 -0.681 16.471 -12.167 -0.681 H49  KYT 68 
KYT H53  H53  H  0 1 N N N 16.668 -9.981  -1.811 16.668 -9.981  -1.811 H53  KYT 69 
KYT H50  H50  H  0 1 N N N 18.040 -12.274 1.068  18.040 -12.274 1.068  H50  KYT 70 
KYT H55  H55  H  0 1 N N N 19.467 -10.321 0.784  19.467 -10.321 0.784  H55  KYT 71 
KYT H511 H511 H  0 0 N N N 16.868 -11.531 2.970  16.868 -11.531 2.970  H511 KYT 72 
KYT H512 H512 H  0 0 N N N 17.848 -10.047 2.797  17.848 -10.047 2.797  H512 KYT 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KYT CL1 RU1  SING N N 1  
KYT N1  C1   SING N N 2  
KYT N1  HAF1 SING N N 3  
KYT N1  HAF2 SING N N 4  
KYT C1  C2   SING N N 5  
KYT C1  C13  SING N N 6  
KYT C1  HAE  SING N N 7  
KYT C2  N3   SING N N 8  
KYT C2  HAD1 SING N N 9  
KYT C2  HAD2 SING N N 10 
KYT C3  C4   SING N N 11 
KYT C3  C7   SING Y N 12 
KYT C3  C11  DOUB Y N 13 
KYT C4  C5   SING N N 14 
KYT C4  C6   SING N N 15 
KYT C4  H10  SING N N 16 
KYT C5  H81C SING N N 17 
KYT C5  H82C SING N N 18 
KYT C5  H83C SING N N 19 
KYT C6  H71C SING N N 20 
KYT C6  H72C SING N N 21 
KYT C6  H73C SING N N 22 
KYT C7  C8   DOUB Y N 23 
KYT C7  H1   SING N N 24 
KYT C8  C9   SING Y N 25 
KYT C8  H2   SING N N 26 
KYT C9  C10  SING N N 27 
KYT C9  C12  DOUB Y N 28 
KYT C10 H91C SING N N 29 
KYT C10 H92C SING N N 30 
KYT C10 H93C SING N N 31 
KYT C11 C12  SING Y N 32 
KYT C11 H5   SING N N 33 
KYT C12 H4   SING N N 34 
KYT N2  C13  SING N N 35 
KYT N2  HAI1 SING N N 36 
KYT N2  HAI2 SING N N 37 
KYT C13 C14  SING N N 38 
KYT C13 HAH  SING N N 39 
KYT C14 N3   SING N N 40 
KYT C14 HAG1 SING N N 41 
KYT C14 HAG2 SING N N 42 
KYT N3  C15  SING N N 43 
KYT C15 O1   DOUB N N 44 
KYT C15 C16  SING N N 45 
KYT C16 C17  SING N N 46 
KYT C16 H401 SING N N 47 
KYT C16 H402 SING N N 48 
KYT C17 C18  SING N N 49 
KYT C17 H451 SING N N 50 
KYT C17 H452 SING N N 51 
KYT C18 C19  SING N N 52 
KYT C18 H461 SING N N 53 
KYT C18 H462 SING N N 54 
KYT C19 C20  SING N N 55 
KYT C19 H471 SING N N 56 
KYT C19 H472 SING N N 57 
KYT C20 C21  SING N N 58 
KYT C20 S1   SING N N 59 
KYT C20 H48  SING N N 60 
KYT C21 N4   SING N N 61 
KYT C21 C23  SING N N 62 
KYT C21 H49  SING N N 63 
KYT N4  C24  SING N N 64 
KYT N4  H53  SING N N 65 
KYT S1  C22  SING N N 66 
KYT C22 C23  SING N N 67 
KYT C22 H511 SING N N 68 
KYT C22 H512 SING N N 69 
KYT C23 N5   SING N N 70 
KYT C23 H50  SING N N 71 
KYT N5  C24  SING N N 72 
KYT N5  H55  SING N N 73 
KYT C24 O2   DOUB N N 74 
KYT N2  RU1  SING N N 75 
KYT N1  RU1  SING N N 76 
KYT C3  RU1  SING N N 77 
KYT C8  RU1  SING N N 78 
KYT C12 RU1  SING N N 79 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KYT SMILES           ACDLabs              11.02 "O=C1NC2C(SCC2N1)CCCCC(=O)N7CC6N[Ru+]45(Cl)(C3=CC5(=CC4=C3C)C(C)C)NC6C7" 
KYT SMILES_CANONICAL CACTVS               3.352 "CC(C)C1|2=CC|3=C(C)C(=C1)|[Ru+]|4|2|3(|N[C@@H]5CN(C[C@H]5N|4)C(=O)CCCC[C@@H]6SC[C@@H]7NC(=O)N[C@H]67)Cl" 
KYT SMILES           CACTVS               3.352 "CC(C)C1|2=CC|3=C(C)C(=C1)|[Ru+]|4|2|3(|N[CH]5CN(C[CH]5N|4)C(=O)CCCC[CH]6SC[CH]7NC(=O)N[CH]67)Cl" 
KYT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC1=[CH]2C=C3([Ru+]24([CH]1=C3)([NH2][C@@H]5CN(C[C@H]5[NH2]4)C(=O)CCCC[C@H]6[C@@H]7[C@H](CS6)NC(=O)N7)Cl)C(C)C" 
KYT SMILES           "OpenEye OEToolkits" 1.7.0 "CC1=[CH]2C=C3([Ru+]24([CH]1=C3)([NH2]C5CN(CC5[NH2]4)C(=O)CCCCC6C7C(CS6)NC(=O)N7)Cl)C(C)C" 
KYT InChI            InChI                1.03  
"InChI=1S/C14H25N5O2S.C10H14.ClH.Ru/c15-8-5-19(6-9(8)16)12(20)4-2-1-3-11-13-10(7-22-11)17-14(21)18-13;1-8(2)10-6-4-9(3)5-7-10;;/h8-11,13H,1-7,15-16H2,(H2,17,18,21);4-8H,1-3H3;1H;/q;;;+2/p-1/t8-,9-,10+,11+,13+;;;/m1.../s1" 
KYT InChIKey         InChI                1.03  OJIBJWGHGYGDGX-SNKMZJELSA-M 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
KYT "SYSTEMATIC NAME" ACDLabs 11.02 "chloro[(3aS,4S,6aR)-4-{5-[(3R,4R)-3,4-di(amino-kappaN)pyrrolidin-1-yl]-5-oxopentyl}tetrahydro-1H-thieno[3,4-d]imidazol-2(3H)-one][1-methyl-4-(propan-2-yl)benzene-kappa~3~C~2~,C~4~,C~6~]ruthenium(1+)" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KYT "Create component"     2009-08-10 EBI  
KYT "Modify aromatic_flag" 2011-06-04 RCSB 
KYT "Modify descriptor"    2011-06-04 RCSB 
# 
