data_KQT
#

_chem_comp.id                                   KQT
_chem_comp.name                                 Berberine
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H27 N2 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2019-06-18
_chem_comp.pdbx_modified_date                   2020-05-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       455.525
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KQT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6S15
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KQT  O2   O1   O  0  1  N  N  N   2.169  -15.272  5.237   5.476   2.611   0.216  O2   KQT   1  
KQT  C2   C1   C  0  1  Y  N  N   1.072  -16.097  5.273   4.162   2.455  -0.040  C2   KQT   2  
KQT  C3   C2   C  0  1  Y  N  N   1.430  -17.339  5.727   3.558   1.959   1.128  C3   KQT   3  
KQT  O3   O2   O  0  1  N  N  N  -6.376  -21.389  5.742  -4.903   1.786  -0.891  O3   KQT   4  
KQT  C4   C3   C  0  1  Y  N  N  -0.229  -15.809  4.941   3.411   2.707  -1.178  C4   KQT   5  
KQT  O4   O3   O  0  1  N  N  N  -6.049  -24.054  5.404  -6.050  -0.122   0.703  O4   KQT   6  
KQT  C5   C4   C  0  1  Y  N  N  -1.183  -16.824  5.034   2.058   2.419  -1.120  C5   KQT   7  
KQT  C6   C5   C  0  1  Y  N  N  -0.811  -18.112  5.462   1.453   1.868   0.012  C6   KQT   8  
KQT  C1   C6   C  0  1  N  N  N   3.265  -16.067  5.698   5.781   1.809   1.368  C1   KQT   9  
KQT  O1   O4   O  0  1  N  N  N   2.783  -17.383  5.978   4.524   1.849   2.063  O1   KQT  10  
KQT  C19  C7   C  0  1  N  N  N  -7.113  -20.913  4.613  -5.177   1.312  -2.211  C19  KQT  11  
KQT  C18  C8   C  0  1  Y  N  N  -5.115  -21.911  5.526  -4.124   0.999  -0.102  C18  KQT  12  
KQT  C13  C9   C  0  1  Y  N  N  -4.021  -21.007  5.506  -2.726   1.155  -0.097  C13  KQT  13  
KQT  C12  C10  C  0  1  Y  N  N  -2.696  -21.537  5.362  -1.927   0.309   0.719  C12  KQT  14  
KQT  C15  C11  C  0  1  Y  N  N  -2.550  -22.949  5.255  -2.551  -0.644   1.537  C15  KQT  15  
KQT  C16  C12  C  0  1  Y  N  N  -3.626  -23.784  5.255  -3.909  -0.775   1.517  C16  KQT  16  
KQT  C17  C13  C  0  1  Y  N  N  -4.917  -23.280  5.390  -4.700   0.035   0.703  C17  KQT  17  
KQT  C20  C14  C  0  1  N  N  N  -5.901  -25.478  5.289  -6.585  -1.134   1.559  C20  KQT  18  
KQT  C11  C15  C  0  1  Y  N  N  -1.579  -20.637  5.312  -0.529   0.470   0.670  C11  KQT  19  
KQT  C10  C16  C  0  1  Y  N  N  -1.833  -19.185  5.448   0.011   1.519  -0.041  C10  KQT  20  
KQT  N1   N1   N  1  1  Y  N  N  -3.178  -18.770  5.603  -0.779   2.255  -0.849  N1   KQT  21  
KQT  C14  C17  C  0  1  Y  N  N  -4.191  -19.628  5.617  -2.083   2.120  -0.882  C14  KQT  22  
KQT  C7   C18  C  0  1  Y  N  N   0.506  -18.342  5.865   2.205   1.674   1.177  C7   KQT  23  
KQT  C8   C19  C  0  1  N  N  N  -2.642  -16.536  4.807   1.184   2.754  -2.308  C8   KQT  24  
KQT  C9   C20  C  0  1  N  N  N  -3.456  -17.325  5.805  -0.171   3.224  -1.773  C9   KQT  25  
KQT  C21  C21  C  0  1  N  N  N  -0.204  -21.234  5.077   0.339  -0.573   1.334  C21  KQT  26  
KQT  C22  C22  C  0  1  N  N  N   0.426  -21.882  6.348   0.562  -1.740   0.370  C22  KQT  27  
KQT  C23  C23  C  0  1  N  N  N   1.683  -22.714  6.093   1.441  -2.796   1.042  C23  KQT  28  
KQT  C25  C24  C  0  1  Y  N  N   3.037  -22.075  5.852   1.660  -3.946   0.093  C25  KQT  29  
KQT  C26  C25  C  0  1  Y  N  N   3.252  -20.706  5.728   2.736  -3.949  -0.781  C26  KQT  30  
KQT  C27  C26  C  0  1  Y  N  N   4.536  -20.205  5.476   2.905  -5.021  -1.637  C27  KQT  31  
KQT  N2   N2   N  0  1  Y  N  N   5.590  -20.992  5.344   2.058  -6.031  -1.628  N2   KQT  32  
KQT  C29  C27  C  0  1  Y  N  N   5.408  -22.366  5.469   1.024  -6.062  -0.811  C29  KQT  33  
KQT  C30  C28  C  0  1  Y  N  N   4.130  -22.927  5.732   0.794  -5.028   0.077  C30  KQT  34  
KQT  H1   H1   H  0  1  N  N  N  -0.508  -14.818  4.615   3.864   3.113  -2.070  H1   KQT  35  
KQT  H2   H2   H  0  1  N  N  N   4.042  -16.114  4.921   6.038   0.789   1.080  H2   KQT  36  
KQT  H3   H3   H  0  1  N  N  N  -8.089  -20.531  4.946  -4.240   1.190  -2.754  H3   KQT  37  
KQT  H4   H4   H  0  1  N  N  N  -6.551  -20.104  4.123  -5.692   0.354  -2.153  H4   KQT  38  
KQT  H5   H5   H  0  1  N  N  N  -7.265  -21.737  3.901  -5.808   2.033  -2.731  H5   KQT  39  
KQT  H6   H6   H  0  1  N  N  N  -1.559  -23.370  5.172  -1.980  -1.281   2.195  H6   KQT  40  
KQT  H7   H7   H  0  1  N  N  N  -3.476  -24.848  5.149  -4.377  -1.521   2.142  H7   KQT  41  
KQT  H8   H8   H  0  1  N  N  N  -6.892  -25.954  5.316  -7.671  -1.154   1.463  H8   KQT  42  
KQT  H9   H9   H  0  1  N  N  N  -5.405  -25.719  4.337  -6.177  -2.104   1.274  H9   KQT  43  
KQT  H10  H10  H  0  1  N  N  N  -5.292  -25.852  6.125  -6.316  -0.916   2.592  H10  KQT  44  
KQT  H11  H11  H  0  1  N  N  N  -5.193  -19.239  5.719  -2.669   2.761  -1.525  H11  KQT  45  
KQT  H12  H12  H  0  1  N  N  N   0.793  -19.297  6.280   1.758   1.362   2.110  H12  KQT  46  
KQT  H13  H13  H  0  1  N  N  N  -2.832  -15.461  4.943   1.645   3.552  -2.886  H13  KQT  47  
KQT  H14  H14  H  0  1  N  N  N  -2.922  -16.832  3.785   1.048   1.869  -2.925  H14  KQT  48  
KQT  H15  H15  H  0  1  N  N  N  -3.175  -17.032  6.827  -0.843   3.378  -2.614  H15  KQT  49  
KQT  H16  H16  H  0  1  N  N  N  -4.527  -17.128  5.649  -0.030   4.168  -1.251  H16  KQT  50  
KQT  H17  H17  H  0  1  N  N  N  -0.290  -22.007  4.300   1.300  -0.131   1.597  H17  KQT  51  
KQT  H18  H18  H  0  1  N  N  N   0.466  -20.435  4.727  -0.154  -0.935   2.236  H18  KQT  52  
KQT  H19  H19  H  0  1  N  N  N   0.687  -21.075  7.049  -0.399  -2.182   0.106  H19  KQT  53  
KQT  H20  H20  H  0  1  N  N  N  -0.329  -22.537  6.807   1.055  -1.378  -0.532  H20  KQT  54  
KQT  H21  H21  H  0  1  N  N  N   1.470  -23.328  5.205   2.402  -2.354   1.306  H21  KQT  55  
KQT  H22  H22  H  0  1  N  N  N   1.803  -23.367  6.970   0.948  -3.158   1.944  H22  KQT  56  
KQT  H23  H23  H  0  1  N  N  N   2.421  -20.023  5.827   3.433  -3.124  -0.794  H23  KQT  57  
KQT  H24  H24  H  0  1  N  N  N   4.670  -19.137  5.386   3.741  -5.031  -2.321  H24  KQT  58  
KQT  H25  H25  H  0  1  N  N  N   6.260  -23.022  5.363   0.351  -6.906  -0.832  H25  KQT  59  
KQT  H26  H26  H  0  1  N  N  N   4.009  -23.995  5.837  -0.055  -5.059   0.745  H26  KQT  60  
KQT  H28  H28  H  0  1  N  N  N   3.687  -15.624  6.612   6.574   2.260   1.963  H28  KQT  61  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KQT  C19  O3   SING  N  N   1  
KQT  C8   C5   SING  N  N   2  
KQT  C8   C9   SING  N  N   3  
KQT  C4   C5   DOUB  Y  N   4  
KQT  C4   C2   SING  Y  N   5  
KQT  C5   C6   SING  Y  N   6  
KQT  C21  C11  SING  N  N   7  
KQT  C21  C22  SING  N  N   8  
KQT  O2   C2   SING  N  N   9  
KQT  O2   C1   SING  N  N  10  
KQT  C16  C15  DOUB  Y  N  11  
KQT  C16  C17  SING  Y  N  12  
KQT  C15  C12  SING  Y  N  13  
KQT  C2   C3   DOUB  Y  N  14  
KQT  C20  O4   SING  N  N  15  
KQT  C11  C12  DOUB  Y  N  16  
KQT  C11  C10  SING  Y  N  17  
KQT  N2   C29  DOUB  Y  N  18  
KQT  N2   C27  SING  Y  N  19  
KQT  C12  C13  SING  Y  N  20  
KQT  C17  O4   SING  N  N  21  
KQT  C17  C18  DOUB  Y  N  22  
KQT  C10  C6   SING  N  N  23  
KQT  C10  N1   DOUB  Y  N  24  
KQT  C6   C7   DOUB  Y  N  25  
KQT  C29  C30  SING  Y  N  26  
KQT  C27  C26  DOUB  Y  N  27  
KQT  C13  C18  SING  Y  N  28  
KQT  C13  C14  DOUB  Y  N  29  
KQT  C18  O3   SING  N  N  30  
KQT  N1   C14  SING  Y  N  31  
KQT  N1   C9   SING  N  N  32  
KQT  C1   O1   SING  N  N  33  
KQT  C3   C7   SING  Y  N  34  
KQT  C3   O1   SING  N  N  35  
KQT  C26  C25  SING  Y  N  36  
KQT  C30  C25  DOUB  Y  N  37  
KQT  C25  C23  SING  N  N  38  
KQT  C23  C22  SING  N  N  39  
KQT  C4   H1   SING  N  N  40  
KQT  C1   H2   SING  N  N  41  
KQT  C19  H3   SING  N  N  42  
KQT  C19  H4   SING  N  N  43  
KQT  C19  H5   SING  N  N  44  
KQT  C15  H6   SING  N  N  45  
KQT  C16  H7   SING  N  N  46  
KQT  C20  H8   SING  N  N  47  
KQT  C20  H9   SING  N  N  48  
KQT  C20  H10  SING  N  N  49  
KQT  C14  H11  SING  N  N  50  
KQT  C7   H12  SING  N  N  51  
KQT  C8   H13  SING  N  N  52  
KQT  C8   H14  SING  N  N  53  
KQT  C9   H15  SING  N  N  54  
KQT  C9   H16  SING  N  N  55  
KQT  C21  H17  SING  N  N  56  
KQT  C21  H18  SING  N  N  57  
KQT  C22  H19  SING  N  N  58  
KQT  C22  H20  SING  N  N  59  
KQT  C23  H21  SING  N  N  60  
KQT  C23  H22  SING  N  N  61  
KQT  C26  H23  SING  N  N  62  
KQT  C27  H24  SING  N  N  63  
KQT  C29  H25  SING  N  N  64  
KQT  C30  H26  SING  N  N  65  
KQT  C1   H28  SING  N  N  66  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KQT  InChI             InChI                 1.03   "InChI=1S/C28H27N2O4/c1-31-24-7-6-20-21(5-3-4-18-8-11-29-12-9-18)27-22-15-26-25(33-17-34-26)14-19(22)10-13-30(27)16-23(20)28(24)32-2/h6-9,11-12,14-16H,3-5,10,13,17H2,1-2H3/q+1"  
KQT  InChIKey          InChI                 1.03   QVKHJFYKHMGTFF-UHFFFAOYSA-N  
KQT  SMILES_CANONICAL  CACTVS                3.385  "COc1ccc2c(CCCc3ccncc3)c4c5cc6OCOc6cc5CC[n+]4cc2c1OC"  
KQT  SMILES            CACTVS                3.385  "COc1ccc2c(CCCc3ccncc3)c4c5cc6OCOc6cc5CC[n+]4cc2c1OC"  
KQT  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1ccc2c(c1OC)c[n+]3c(c2CCCc4ccncc4)-c5cc6c(cc5CC3)OCO6"  
KQT  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1ccc2c(c1OC)c[n+]3c(c2CCCc4ccncc4)-c5cc6c(cc5CC3)OCO6"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KQT  "Create component"  2019-06-18  RCSB  
KQT  "Initial release"   2020-06-03  RCSB  
##
