data_K0T
#

_chem_comp.id                                   K0T
_chem_comp.name                                 "(2~{S})-5-carbamimidamido-2-[[(2~{S})-2-[[(2~{S})-1-[5-(dimethylamino)naphthalen-1-yl]sulfonylpiperidin-2-yl]carbonylamino]-4-phenyl-butanoyl]amino]pentanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C34 H45 N7 O6 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-04-12
_chem_comp.pdbx_modified_date                   2020-05-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       679.829
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    K0T
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RCY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K0T  O3   O1   O  0  1  N  N  N  -28.223  23.308  6.432  -2.182  -0.655   2.256  O3   K0T   1  
K0T  C4   C1   C  0  1  Y  N  N  -29.185  19.294  8.460   3.503   2.417  -1.856  C4   K0T   2  
K0T  C5   C2   C  0  1  Y  N  N  -27.893  19.223  8.890   2.180   2.200  -1.616  C5   K0T   3  
K0T  O4   O2   O  0  1  N  N  N  -30.120  27.225  4.894  -5.242  -1.842   1.734  O4   K0T   4  
K0T  C6   C3   C  0  1  Y  N  N  -26.886  18.763  8.054   1.760   1.520  -0.476  C6   K0T   5  
K0T  N1   N1   N  0  1  N  N  N  -25.912  19.083  4.448   2.681  -1.355   1.766  N1   K0T   6  
K0T  C7   C4   C  0  1  Y  N  N  -27.174  18.360  6.778   2.661   1.052   0.432  C7   K0T   7  
K0T  C8   C5   C  0  1  Y  N  N  -28.523  18.331  6.301   4.035   1.257   0.218  C8   K0T   8  
K0T  N2   N2   N  0  1  N  N  N  -27.461  21.510  4.341  -0.266  -1.634   0.757  N2   K0T   9  
K0T  C9   C6   C  0  1  Y  N  N  -28.908  17.766  5.056   4.992   0.788   1.134  C9   K0T  10  
K0T  O5   O3   O  0  1  N  N  N  -30.182  26.608  7.049  -6.380  -0.493   3.064  O5   K0T  11  
K0T  C10  C7   C  0  1  Y  N  N  -30.218  17.729  4.671   6.317   1.001   0.902  C10  K0T  12  
K0T  C11  C8   C  0  1  Y  N  N  -31.215  18.258  5.476   6.747   1.680  -0.235  C11  K0T  13  
K0T  C12  C9   C  0  1  N  N  N  -26.273  18.585  3.090   3.771  -1.809   2.642  C12  K0T  14  
K0T  N3   N3   N  0  1  N  N  N  -28.351  24.915  4.846  -3.616  -0.089   0.661  N3   K0T  15  
K0T  C13  C10  C  0  1  N  N  N  -25.170  18.887  2.095   3.326  -3.086   3.361  C13  K0T  16  
K0T  C14  C11  C  0  1  N  N  N  -23.885  19.246  2.799   2.879  -4.121   2.326  C14  K0T  17  
K0T  C15  C12  C  0  1  N  N  N  -24.035  20.507  3.638   1.689  -3.572   1.534  C15  K0T  18  
K0T  N4   N4   N  0  1  N  N  N  -25.671  30.424  5.745  -4.727   4.886  -0.465  N4   K0T  19  
K0T  N    N5   N  0  1  N  N  N  -31.904  19.503  7.510   6.281   2.834  -2.291  N    K0T  20  
K0T  C    C13  C  0  1  N  N  N  -32.392  20.772  6.994   6.955   4.087  -1.926  C    K0T  21  
K0T  O    O4   O  0  1  N  N  N  -25.884  16.719  5.212   0.692   0.106   1.762  O    K0T  22  
K0T  C1   C14  C  0  1  N  N  N  -32.837  18.657  8.236   7.159   1.982  -3.105  C1   K0T  23  
K0T  S    S1   S  0  1  N  N  N  -25.778  18.050  5.724   2.107   0.195   1.868  S    K0T  24  
K0T  O1   O5   O  0  1  N  N  N  -24.612  18.437  6.453   2.767   0.795   2.974  O1   K0T  25  
K0T  C16  C15  C  0  1  N  N  S  -25.285  20.437  4.523   2.116  -2.301   0.794  C16  K0T  26  
K0T  C17  C16  C  0  1  N  N  N  -26.135  21.690  4.306   0.921  -1.678   0.120  C17  K0T  27  
K0T  C18  C17  C  0  1  N  N  S  -28.436  22.574  4.159  -1.452  -1.127   0.062  C18  K0T  28  
K0T  C19  C18  C  0  1  N  N  N  -29.845  21.976  4.081  -2.093  -2.259  -0.744  C19  K0T  29  
K0T  C2   C19  C  0  1  Y  N  N  -30.908  18.831  6.708   5.840   2.156  -1.157  C2   K0T  30  
K0T  C20  C20  C  0  1  N  N  N  -30.036  21.092  2.842  -1.135  -2.703  -1.850  C20  K0T  31  
K0T  C21  C21  C  0  1  Y  N  N  -31.380  20.415  2.695  -1.766  -3.817  -2.645  C21  K0T  32  
K0T  C22  C22  C  0  1  Y  N  N  -31.508  19.276  1.902  -1.575  -5.132  -2.263  C22  K0T  33  
K0T  C23  C23  C  0  1  Y  N  N  -32.735  18.642  1.762  -2.154  -6.154  -2.991  C23  K0T  34  
K0T  C24  C24  C  0  1  Y  N  N  -33.847  19.127  2.424  -2.924  -5.862  -4.101  C24  K0T  35  
K0T  C25  C25  C  0  1  Y  N  N  -33.733  20.261  3.208  -3.115  -4.547  -4.483  C25  K0T  36  
K0T  C26  C26  C  0  1  Y  N  N  -32.512  20.906  3.333  -2.541  -3.524  -3.751  C26  K0T  37  
K0T  C27  C27  C  0  1  N  N  N  -28.341  23.639  5.256  -2.442  -0.607   1.073  C27  K0T  38  
K0T  C28  C28  C  0  1  N  N  S  -28.239  26.062  5.734  -4.578   0.417   1.643  C28  K0T  39  
K0T  C29  C29  C  0  1  N  N  N  -27.270  27.096  5.152  -5.476   1.465   0.984  C29  K0T  40  
K0T  C3   C30  C  0  1  Y  N  N  -29.552  18.847  7.161   4.460   1.944  -0.945  C3   K0T  41  
K0T  C30  C31  C  0  1  N  N  N  -27.091  28.421  5.887  -4.635   2.678   0.580  C30  K0T  42  
K0T  C31  C32  C  0  1  N  N  N  -25.915  29.086  5.181  -5.533   3.726  -0.079  C31  K0T  43  
K0T  C32  C33  C  0  1  N  N  N  -24.856  31.306  5.317  -5.322   5.963  -1.080  C32  K0T  44  
K0T  C33  C34  C  0  1  N  N  N  -29.615  26.664  5.970  -5.424  -0.722   2.150  C33  K0T  45  
K0T  N5   N6   N  0  1  N  N  N  -24.668  32.503  5.879  -6.673   5.950  -1.332  N5   K0T  46  
K0T  N6   N7   N  0  1  N  N  N  -24.133  31.007  4.232  -4.605   6.996  -1.423  N6   K0T  47  
K0T  O2   O6   O  0  1  N  N  N  -25.598  22.787  4.149   1.027  -1.216  -0.997  O2   K0T  48  
K0T  H1   H1   H  0  1  N  N  N  -29.942  19.696  9.117   3.814   2.947  -2.744  H1   K0T  49  
K0T  H2   H2   H  0  1  N  N  N  -27.650  19.530  9.897   1.446   2.562  -2.321  H2   K0T  50  
K0T  H3   H3   H  0  1  N  N  N  -25.868  18.723  8.412   0.705   1.361  -0.309  H3   K0T  51  
K0T  H4   H4   H  0  1  N  N  N  -27.803  20.584  4.503  -0.334  -1.938   1.676  H4   K0T  52  
K0T  H5   H5   H  0  1  N  N  N  -28.151  17.358  4.402   4.677   0.260   2.022  H5   K0T  53  
K0T  H6   H6   H  0  1  N  N  N  -31.031  27.029  6.983  -6.897  -1.256   3.359  H6   K0T  54  
K0T  H7   H7   H  0  1  N  N  N  -30.481  17.281  3.724   7.045   0.637   1.611  H7   K0T  55  
K0T  H8   H8   H  0  1  N  N  N  -32.242  18.225  5.144   7.804   1.835  -0.395  H8   K0T  56  
K0T  H9   H9   H  0  1  N  N  N  -27.200  19.076  2.760   4.658  -2.016   2.044  H9   K0T  57  
K0T  H10  H10  H  0  1  N  N  N  -26.430  17.497  3.135   3.997  -1.034   3.375  H10  K0T  58  
K0T  H11  H11  H  0  1  N  N  N  -28.441  25.090  3.866  -3.824  -0.051  -0.286  H11  K0T  59  
K0T  H12  H12  H  0  1  N  N  N  -25.480  19.731  1.461   4.158  -3.486   3.940  H12  K0T  60  
K0T  H13  H13  H  0  1  N  N  N  -25.000  18.000  1.467   2.495  -2.857   4.028  H13  K0T  61  
K0T  H14  H14  H  0  1  N  N  N  -23.594  18.413  3.456   3.703  -4.331   1.644  H14  K0T  62  
K0T  H15  H15  H  0  1  N  N  N  -23.100  19.410  2.046   2.585  -5.039   2.834  H15  K0T  63  
K0T  H16  H16  H  0  1  N  N  N  -23.148  20.620  4.278   1.357  -4.319   0.813  H16  K0T  64  
K0T  H17  H17  H  0  1  N  N  N  -24.117  21.376  2.969   0.874  -3.339   2.219  H17  K0T  65  
K0T  H18  H18  H  0  1  N  N  N  -26.204  30.668  6.555  -3.773   4.896  -0.287  H18  K0T  66  
K0T  H19  H19  H  0  1  N  N  N  -33.141  21.186  7.685   7.290   4.597  -2.830  H19  K0T  67  
K0T  H20  H20  H  0  1  N  N  N  -31.552  21.476  6.899   6.260   4.729  -1.384  H20  K0T  68  
K0T  H21  H21  H  0  1  N  N  N  -32.852  20.614  6.007   7.815   3.867  -1.294  H21  K0T  69  
K0T  H22  H22  H  0  1  N  N  N  -33.538  19.286  8.803   8.060   1.743  -2.540  H22  K0T  70  
K0T  H23  H23  H  0  1  N  N  N  -33.398  18.034  7.524   6.636   1.061  -3.362  H23  K0T  71  
K0T  H24  H24  H  0  1  N  N  N  -32.281  18.010  8.930   7.432   2.511  -4.019  H24  K0T  72  
K0T  H25  H25  H  0  1  N  N  N  -24.908  20.525  5.553   2.870  -2.552   0.048  H25  K0T  73  
K0T  H26  H26  H  0  1  N  N  N  -28.234  23.070  3.198  -1.162  -0.321  -0.611  H26  K0T  74  
K0T  H27  H27  H  0  1  N  N  N  -30.576  22.797  4.045  -2.302  -3.101  -0.084  H27  K0T  75  
K0T  H28  H28  H  0  1  N  N  N  -30.021  21.367  4.980  -3.023  -1.906  -1.189  H28  K0T  76  
K0T  H29  H29  H  0  1  N  N  N  -29.267  20.306  2.871  -0.925  -1.860  -2.510  H29  K0T  77  
K0T  H30  H30  H  0  1  N  N  N  -29.881  21.723  1.954  -0.204  -3.056  -1.406  H30  K0T  78  
K0T  H31  H31  H  0  1  N  N  N  -30.642  18.882  1.390  -0.973  -5.361  -1.395  H31  K0T  79  
K0T  H32  H32  H  0  1  N  N  N  -32.821  17.767  1.134  -2.004  -7.182  -2.693  H32  K0T  80  
K0T  H33  H33  H  0  1  N  N  N  -34.798  18.624  2.330  -3.375  -6.661  -4.671  H33  K0T  81  
K0T  H34  H34  H  0  1  N  N  N  -34.599  20.646  3.725  -3.717  -4.319  -5.350  H34  K0T  82  
K0T  H35  H35  H  0  1  N  N  N  -32.440  21.801  3.934  -2.693  -2.497  -4.047  H35  K0T  83  
K0T  H36  H36  H  0  1  N  N  N  -27.839  25.728  6.703  -4.042   0.871   2.477  H36  K0T  84  
K0T  H37  H37  H  0  1  N  N  N  -26.280  26.619  5.097  -5.944   1.037   0.097  H37  K0T  85  
K0T  H38  H38  H  0  1  N  N  N  -27.620  27.333  4.136  -6.248   1.777   1.687  H38  K0T  86  
K0T  H39  H39  H  0  1  N  N  N  -27.997  29.039  5.802  -4.167   3.106   1.467  H39  K0T  87  
K0T  H40  H40  H  0  1  N  N  N  -26.862  28.250  6.949  -3.863   2.366  -0.123  H40  K0T  88  
K0T  H41  H41  H  0  1  N  N  N  -26.141  29.180  4.109  -6.305   4.037   0.625  H41  K0T  89  
K0T  H42  H42  H  0  1  N  N  N  -25.015  28.467  5.313  -6.001   3.297  -0.965  H42  K0T  90  
K0T  H43  H43  H  0  1  N  N  N  -25.186  32.759  6.695  -7.207   5.181  -1.076  H43  K0T  91  
K0T  H44  H44  H  0  1  N  N  N  -24.009  33.143  5.484  -7.093   6.709  -1.765  H44  K0T  92  
K0T  H45  H45  H  0  1  N  N  N  -23.519  31.753  3.973  -5.024   7.755  -1.857  H45  K0T  93  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K0T  C23  C22  DOUB  Y  N   1  
K0T  C23  C24  SING  Y  N   2  
K0T  C22  C21  SING  Y  N   3  
K0T  C13  C14  SING  N  N   4  
K0T  C13  C12  SING  N  N   5  
K0T  C24  C25  DOUB  Y  N   6  
K0T  C21  C20  SING  N  N   7  
K0T  C21  C26  DOUB  Y  N   8  
K0T  C14  C15  SING  N  N   9  
K0T  C20  C19  SING  N  N  10  
K0T  C12  N1   SING  N  N  11  
K0T  C25  C26  SING  Y  N  12  
K0T  C15  C16  SING  N  N  13  
K0T  C19  C18  SING  N  N  14  
K0T  O2   C17  DOUB  N  N  15  
K0T  C18  N2   SING  N  N  16  
K0T  C18  C27  SING  N  N  17  
K0T  N6   C32  DOUB  N  N  18  
K0T  C17  N2   SING  N  N  19  
K0T  C17  C16  SING  N  N  20  
K0T  N1   C16  SING  N  N  21  
K0T  N1   S    SING  N  N  22  
K0T  C10  C9   DOUB  Y  N  23  
K0T  C10  C11  SING  Y  N  24  
K0T  N3   C27  SING  N  N  25  
K0T  N3   C28  SING  N  N  26  
K0T  O4   C33  DOUB  N  N  27  
K0T  C9   C8   SING  Y  N  28  
K0T  C29  C28  SING  N  N  29  
K0T  C29  C30  SING  N  N  30  
K0T  C31  N4   SING  N  N  31  
K0T  C31  C30  SING  N  N  32  
K0T  O    S    DOUB  N  N  33  
K0T  C27  O3   DOUB  N  N  34  
K0T  C32  N4   SING  N  N  35  
K0T  C32  N5   SING  N  N  36  
K0T  C11  C2   DOUB  Y  N  37  
K0T  S    O1   DOUB  N  N  38  
K0T  S    C7   SING  N  N  39  
K0T  C28  C33  SING  N  N  40  
K0T  C33  O5   SING  N  N  41  
K0T  C8   C7   DOUB  Y  N  42  
K0T  C8   C3   SING  Y  N  43  
K0T  C2   C3   SING  Y  N  44  
K0T  C2   N    SING  N  N  45  
K0T  C7   C6   SING  Y  N  46  
K0T  C    N    SING  N  N  47  
K0T  C3   C4   DOUB  Y  N  48  
K0T  N    C1   SING  N  N  49  
K0T  C6   C5   DOUB  Y  N  50  
K0T  C4   C5   SING  Y  N  51  
K0T  C4   H1   SING  N  N  52  
K0T  C5   H2   SING  N  N  53  
K0T  C6   H3   SING  N  N  54  
K0T  N2   H4   SING  N  N  55  
K0T  C9   H5   SING  N  N  56  
K0T  O5   H6   SING  N  N  57  
K0T  C10  H7   SING  N  N  58  
K0T  C11  H8   SING  N  N  59  
K0T  C12  H9   SING  N  N  60  
K0T  C12  H10  SING  N  N  61  
K0T  N3   H11  SING  N  N  62  
K0T  C13  H12  SING  N  N  63  
K0T  C13  H13  SING  N  N  64  
K0T  C14  H14  SING  N  N  65  
K0T  C14  H15  SING  N  N  66  
K0T  C15  H16  SING  N  N  67  
K0T  C15  H17  SING  N  N  68  
K0T  N4   H18  SING  N  N  69  
K0T  C    H19  SING  N  N  70  
K0T  C    H20  SING  N  N  71  
K0T  C    H21  SING  N  N  72  
K0T  C1   H22  SING  N  N  73  
K0T  C1   H23  SING  N  N  74  
K0T  C1   H24  SING  N  N  75  
K0T  C16  H25  SING  N  N  76  
K0T  C18  H26  SING  N  N  77  
K0T  C19  H27  SING  N  N  78  
K0T  C19  H28  SING  N  N  79  
K0T  C20  H29  SING  N  N  80  
K0T  C20  H30  SING  N  N  81  
K0T  C22  H31  SING  N  N  82  
K0T  C23  H32  SING  N  N  83  
K0T  C24  H33  SING  N  N  84  
K0T  C25  H34  SING  N  N  85  
K0T  C26  H35  SING  N  N  86  
K0T  C28  H36  SING  N  N  87  
K0T  C29  H37  SING  N  N  88  
K0T  C29  H38  SING  N  N  89  
K0T  C30  H39  SING  N  N  90  
K0T  C30  H40  SING  N  N  91  
K0T  C31  H41  SING  N  N  92  
K0T  C31  H42  SING  N  N  93  
K0T  N5   H43  SING  N  N  94  
K0T  N5   H44  SING  N  N  95  
K0T  N6   H45  SING  N  N  96  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K0T  InChI             InChI                 1.03   "InChI=1S/C34H45N7O6S/c1-40(2)28-17-8-14-25-24(28)13-9-18-30(25)48(46,47)41-22-7-6-16-29(41)32(43)38-26(20-19-23-11-4-3-5-12-23)31(42)39-27(33(44)45)15-10-21-37-34(35)36/h3-5,8-9,11-14,17-18,26-27,29H,6-7,10,15-16,19-22H2,1-2H3,(H,38,43)(H,39,42)(H,44,45)(H4,35,36,37)/t26-,27-,29-/m0/s1"  
K0T  InChIKey          InChI                 1.03   MKNCAFDCRIGOAN-YCVJPRETSA-N  
K0T  SMILES_CANONICAL  CACTVS                3.385  "CN(C)c1cccc2c1cccc2[S](=O)(=O)N3CCCC[C@H]3C(=O)N[C@@H](CCc4ccccc4)C(=O)N[C@@H](CCCNC(N)=N)C(O)=O"  
K0T  SMILES            CACTVS                3.385  "CN(C)c1cccc2c1cccc2[S](=O)(=O)N3CCCC[CH]3C(=O)N[CH](CCc4ccccc4)C(=O)N[CH](CCCNC(N)=N)C(O)=O"  
K0T  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "[H]/N=C(/N)\NCCC[C@@H](C(=O)O)NC(=O)[C@H](CCc1ccccc1)NC(=O)[C@@H]2CCCCN2S(=O)(=O)c3cccc4c3cccc4N(C)C"  
K0T  SMILES            "OpenEye OEToolkits"  2.0.7  "CN(C)c1cccc2c1cccc2S(=O)(=O)N3CCCCC3C(=O)NC(CCc4ccccc4)C(=O)NC(CCCNC(=N)N)C(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          K0T
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-5-carbamimidamido-2-[[(2~{S})-2-[[(2~{S})-1-[5-(dimethylamino)naphthalen-1-yl]sulfonylpiperidin-2-yl]carbonylamino]-4-phenyl-butanoyl]amino]pentanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K0T  "Create component"  2019-04-12  RCSB  
K0T  "Initial release"   2020-05-13  RCSB  
##
