data_JOT
#

_chem_comp.id                                   JOT
_chem_comp.name                                 "~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-2-phenyl-ethanamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H12 N2 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-03-14
_chem_comp.pdbx_modified_date                   2019-08-02
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       232.235
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JOT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6R12
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JOT  C4   C1   C  0  1  N  N  N  22.432  13.933  26.202  -2.492  -1.016   0.251  C4   JOT   1  
JOT  C5   C2   C  0  1  N  N  N  24.415  15.547  28.185   0.333   0.462  -0.118  C5   JOT   2  
JOT  C6   C3   C  0  1  N  N  N  24.238  16.043  29.588   1.426   0.857  -1.078  C6   JOT   3  
JOT  C11  C4   C  0  1  Y  N  N  21.092  17.973  30.009   4.717   0.798   0.771  C11  JOT   4  
JOT  C7   C5   C  0  1  Y  N  N  23.275  17.194  29.691   2.756   0.394  -0.543  C7   JOT   5  
JOT  C8   C6   C  0  1  Y  N  N  23.777  18.486  29.714   3.236  -0.859  -0.874  C8   JOT   6  
JOT  C9   C7   C  0  1  Y  N  N  22.902  19.555  29.812   4.459  -1.282  -0.388  C9   JOT   7  
JOT  C10  C8   C  0  1  Y  N  N  21.583  19.256  30.109   5.197  -0.456   0.439  C10  JOT   8  
JOT  C12  C9   C  0  1  Y  N  N  21.963  16.947  29.792   3.496   1.222   0.280  C12  JOT   9  
JOT  N1   N1   N  0  1  N  N  N  21.963  12.795  25.627  -3.790  -0.980  -0.074  N1   JOT  10  
JOT  N2   N2   N  0  1  N  N  N  24.019  14.297  27.998  -0.950   0.774  -0.392  N2   JOT  11  
JOT  C3   C10  C  0  1  N  N  S  23.830  13.683  26.709  -2.012   0.389   0.541  C3   JOT  12  
JOT  C1   C11  C  0  1  N  N  N  22.776  11.714  25.738  -4.329   0.246  -0.070  C1   JOT  13  
JOT  C2   C12  C  0  1  N  N  N  23.924  12.105  26.591  -3.269   1.254   0.318  C2   JOT  14  
JOT  O1   O1   O  0  1  N  N  N  22.634  10.711  25.147  -5.483   0.506  -0.334  O1   JOT  15  
JOT  O2   O2   O  0  1  N  N  N  21.811  14.971  26.220  -1.811  -2.017   0.310  O2   JOT  16  
JOT  O3   O3   O  0  1  N  N  N  25.092  16.190  27.329   0.607  -0.137   0.900  O3   JOT  17  
JOT  H1   H1   H  0  1  N  N  N  23.861  15.215  30.207   1.243   0.394  -2.047  H1   JOT  18  
JOT  H2   H2   H  0  1  N  N  N  25.216  16.370  29.969   1.436   1.941  -1.189  H2   JOT  19  
JOT  H3   H3   H  0  1  N  N  N  20.033  17.783  30.101   5.293   1.443   1.417  H3   JOT  20  
JOT  H4   H4   H  0  1  N  N  N  24.842  18.657  29.656   2.658  -1.506  -1.517  H4   JOT  21  
JOT  H5   H5   H  0  1  N  N  N  23.232  20.573  29.664   4.834  -2.261  -0.647  H5   JOT  22  
JOT  H6   H6   H  0  1  N  N  N  20.922  20.049  30.427   6.148  -0.789   0.826  H6   JOT  23  
JOT  H7   H7   H  0  1  N  N  N  21.595  15.936  29.702   3.122   2.202   0.538  H7   JOT  24  
JOT  H8   H8   H  0  1  N  N  N  21.082  12.757  25.156  -4.298  -1.776  -0.295  H8   JOT  25  
JOT  H9   H9   H  0  1  N  N  N  23.839  13.740  28.809  -1.169   1.253  -1.206  H9   JOT  26  
JOT  H10  H10  H  0  1  N  N  N  24.544  14.113  25.991  -1.665   0.471   1.571  H10  JOT  27  
JOT  H11  H11  H  0  1  N  N  N  23.845  11.638  27.584  -3.548   1.769   1.237  H11  JOT  28  
JOT  H12  H12  H  0  1  N  N  N  24.873  11.808  26.121  -3.106   1.969  -0.489  H12  JOT  29  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JOT  O1   C1   DOUB  N  N   1  
JOT  N1   C1   SING  N  N   2  
JOT  N1   C4   SING  N  N   3  
JOT  C1   C2   SING  N  N   4  
JOT  C4   O2   DOUB  N  N   5  
JOT  C4   C3   SING  N  N   6  
JOT  C2   C3   SING  N  N   7  
JOT  C3   N2   SING  N  N   8  
JOT  O3   C5   DOUB  N  N   9  
JOT  N2   C5   SING  N  N  10  
JOT  C5   C6   SING  N  N  11  
JOT  C6   C7   SING  N  N  12  
JOT  C7   C8   DOUB  Y  N  13  
JOT  C7   C12  SING  Y  N  14  
JOT  C8   C9   SING  Y  N  15  
JOT  C12  C11  DOUB  Y  N  16  
JOT  C9   C10  DOUB  Y  N  17  
JOT  C11  C10  SING  Y  N  18  
JOT  C6   H1   SING  N  N  19  
JOT  C6   H2   SING  N  N  20  
JOT  C11  H3   SING  N  N  21  
JOT  C8   H4   SING  N  N  22  
JOT  C9   H5   SING  N  N  23  
JOT  C10  H6   SING  N  N  24  
JOT  C12  H7   SING  N  N  25  
JOT  N1   H8   SING  N  N  26  
JOT  N2   H9   SING  N  N  27  
JOT  C3   H10  SING  N  N  28  
JOT  C2   H11  SING  N  N  29  
JOT  C2   H12  SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JOT  InChI             InChI                 1.03   "InChI=1S/C12H12N2O3/c15-10(6-8-4-2-1-3-5-8)13-9-7-11(16)14-12(9)17/h1-5,9H,6-7H2,(H,13,15)(H,14,16,17)/t9-/m0/s1"  
JOT  InChIKey          InChI                 1.03   ZTMDMWMWWGOUHX-VIFPVBQESA-N  
JOT  SMILES_CANONICAL  CACTVS                3.385  "O=C1C[C@H](NC(=O)Cc2ccccc2)C(=O)N1"  
JOT  SMILES            CACTVS                3.385  "O=C1C[CH](NC(=O)Cc2ccccc2)C(=O)N1"  
JOT  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CC(=O)N[C@H]2CC(=O)NC2=O"  
JOT  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CC(=O)NC2CC(=O)NC2=O"  
#
_pdbx_chem_comp_identifier.comp_id          JOT
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-2-phenyl-ethanamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JOT  "Create component"  2019-03-14  RCSB  
JOT  "Initial release"   2019-08-07  RCSB  
##
