data_JKT
# 
_chem_comp.id                                    JKT 
_chem_comp.name                                  "tert-butyl N-[[1-[(3S,5S)-5-[(2S)-2-[azanyl(oxidanyl)methyl]pyrrolidin-1-yl]carbonyl-1-(4-phenylbutanoyl)pyrrolidin-3-yl]-1,2,3-triazol-4-yl]methyl]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H41 N7 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-10-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        555.669 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JKT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4BCC 
_chem_comp.pdbx_subcomponent_list                "CLT VH0 BOC V8W" 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JKT C14  C14  C 0 1 N N N N N N 42.682 37.560 85.925 -3.569  -1.508 0.455  CA   CLT 1  
JKT C15  C15  C 0 1 N N N N N N 44.094 37.846 85.430 -5.016  -1.474 -0.041 CB1  CLT 2  
JKT C16  C16  C 0 1 N N N N N N 45.089 37.790 86.592 -5.488  -2.899 -0.335 CG   CLT 3  
JKT C17  C17  C 0 1 Y N N N N N 45.165 36.377 87.164 -6.913  -2.865 -0.823 CD   CLT 4  
JKT C18  C18  C 0 1 Y N N N N N 44.943 36.170 88.516 -7.179  -2.745 -2.174 CE1  CLT 5  
JKT C22  C22  C 0 1 Y N N N N N 45.481 35.314 86.344 -7.956  -2.958 0.080  CE2  CLT 6  
JKT C19  C19  C 0 1 Y N N N N N 44.990 34.878 89.056 -8.486  -2.714 -2.622 CZ1  CLT 7  
JKT C21  C21  C 0 1 Y N N N N N 45.536 34.022 86.865 -9.263  -2.928 -0.368 CZ2  CLT 8  
JKT C20  C20  C 0 1 Y N N N N N 45.281 33.794 88.220 -9.528  -2.803 -1.719 CH   CLT 9  
JKT C12  C12  C 0 1 N N N N N N 41.760 37.230 84.771 -3.103  -0.104 0.744  CB2  CLT 10 
JKT O13  O13  O 0 1 N N N N N N 42.131 37.263 83.615 -3.855  0.832  0.572  OG1  CLT 11 
JKT N11  N11  N 0 1 N N N N N N 40.437 37.019 85.073 -1.851  0.111  1.196  N11  VH0 12 
JKT C23  C23  C 0 1 N N N N N N 40.103 36.520 86.420 -0.838  -0.930 1.449  C23  VH0 13 
JKT C10  C10  C 0 1 N N S N N N 39.610 36.381 84.044 -1.268  1.423  1.511  C10  VH0 14 
JKT C8   C8   C 0 1 N N N N N N 39.103 37.522 83.177 -1.238  2.282  0.273  C8   VH0 15 
JKT O9   O9   O 0 1 N N N N N N 39.201 38.710 83.514 -1.334  1.770  -0.822 O9   VH0 16 
JKT C25  C25  C 0 1 N N N N N N 38.561 35.624 84.829 0.169   1.177  2.015  C25  VH0 17 
JKT C24  C24  C 0 1 N N S N N N 38.641 36.185 86.234 0.124   -0.302 2.487  C24  VH0 18 
JKT N26  N26  N 0 1 Y N N N N N 37.803 37.409 86.197 1.452   -0.917 2.412  N26  VH0 19 
JKT N27  N27  N 0 1 Y N N N N N 38.240 38.582 86.826 2.250   -1.111 3.403  N27  VH0 20 
JKT N28  N28  N 0 1 Y N N N N N 37.199 39.513 86.623 3.334   -1.672 2.996  N28  VH0 21 
JKT C30  C30  C 0 1 Y N N N N N 36.596 37.581 85.666 2.047   -1.383 1.290  C30  VH0 22 
JKT C29  C29  C 0 1 Y N N N N N 36.224 38.888 85.920 3.254   -1.860 1.673  C29  VH0 23 
JKT C31  C31  C 0 1 N N N N N N 34.923 39.467 85.425 4.300   -2.485 0.787  C31  VH0 24 
JKT N32  N32  N 0 1 N N N N N N 34.119 40.122 86.447 5.272   -1.465 0.385  N32  VH0 25 
JKT O34  O34  O 0 1 N N N N N N 32.883 41.075 84.922 6.430   -2.940 -0.803 O1   BOC 26 
JKT C33  C33  C 0 1 N N N N N N 32.944 40.551 86.022 6.305   -1.796 -0.415 C    BOC 27 
JKT O35  O35  O 0 1 N N N N N N 31.741 40.345 86.843 7.198   -0.859 -0.784 O2   BOC 28 
JKT C36  C36  C 0 1 N N N N N N 30.751 41.347 87.104 8.285   -1.287 -1.646 CT   BOC 29 
JKT C39  C39  C 0 1 N N N N N N 30.634 42.327 85.939 7.711   -1.844 -2.951 C1   BOC 30 
JKT C37  C37  C 0 1 N N N N N N 31.118 42.112 88.376 9.191   -0.093 -1.956 C2   BOC 31 
JKT C38  C38  C 0 1 N N N N N N 29.406 40.658 87.301 9.098   -2.374 -0.942 C3   BOC 32 
JKT N7   N7   N 0 1 N N N N N N 38.592 37.190 81.984 -1.103  3.618  0.383  N7   V8W 33 
JKT C3   C3   C 0 1 N N S N N N 38.094 38.228 81.064 -1.058  4.570  -0.737 C3   V8W 34 
JKT C1   C1   C 0 1 N N R N N N 36.647 38.728 81.243 0.148   4.268  -1.628 C1   V8W 35 
JKT N2   N2   N 0 1 N N N N N N 35.812 37.854 81.618 0.184   5.223  -2.744 N2   V8W 36 
JKT C4   C4   C 0 1 N N N N N N 38.129 37.443 79.749 -0.924  5.983  -0.132 C4   V8W 37 
JKT C5   C5   C 0 1 N N N N N N 37.832 35.999 80.115 -1.469  5.798  1.308  C5   V8W 38 
JKT C6   C6   C 0 1 N N N N N N 38.468 35.820 81.482 -0.983  4.369  1.646  C6   V8W 39 
JKT OXT  OXT  O 0 1 N Y N N N N 36.154 39.545 80.226 0.040   2.939  -2.143 OXT  V8W 40 
JKT H141 H141 H 0 0 N N N N N N 42.298 38.447 86.450 -3.510  -2.105 1.365  HA1  CLT 41 
JKT H142 H142 H 0 0 N N N N N N 42.710 36.707 86.619 -2.932  -1.951 -0.312 HA2  CLT 42 
JKT H151 H151 H 0 0 N N N N N N 44.373 37.094 84.677 -5.652  -1.031 0.726  HB11 CLT 43 
JKT H152 H152 H 0 0 N N N N N N 44.123 38.848 84.976 -5.074  -0.876 -0.951 HB12 CLT 44 
JKT H161 H161 H 0 0 N N N N N N 46.084 38.088 86.231 -4.852  -3.342 -1.101 HG1  CLT 45 
JKT H162 H162 H 0 0 N N N N N N 44.763 38.483 87.382 -5.430  -3.496 0.575  HG2  CLT 46 
JKT H18  H18  H 0 1 N N N N N N 44.732 37.012 89.159 -6.364  -2.676 -2.880 HE1  CLT 47 
JKT H22  H22  H 0 1 N N N N N N 45.686 35.483 85.297 -7.749  -3.056 1.136  HE2  CLT 48 
JKT H19  H19  H 0 1 N N N N N N 44.803 34.720 90.108 -8.693  -2.620 -3.678 HZ1  CLT 49 
JKT H21  H21  H 0 1 N N N N N N 45.777 33.192 86.217 -10.078 -3.001 0.338  HZ2  CLT 50 
JKT H20  H20  H 0 1 N N N N N N 45.308 32.791 88.618 -10.550 -2.778 -2.068 HH   CLT 51 
JKT H231 H231 H 0 0 N N N N N N 40.694 35.630 86.681 -1.308  -1.824 1.858  H231 VH0 52 
JKT H232 H232 H 0 0 N N N N N N 40.248 37.294 87.188 -0.302  -1.168 0.530  H232 VH0 53 
JKT H10  H10  H 0 1 N N N N N N 40.207 35.683 83.439 -1.856  1.913  2.287  H10  VH0 54 
JKT H24  H24  H 0 1 N N N N N N 38.289 35.461 86.983 -0.284  -0.380 3.495  H24  VH0 55 
JKT H251 H251 H 0 0 N N N N N N 37.562 35.793 84.402 0.888   1.298  1.204  H251 VH0 56 
JKT H252 H252 H 0 0 N N N N N N 38.782 34.546 84.830 0.407   1.842  2.845  H252 VH0 57 
JKT H30  H30  H 0 1 N N N N N N 36.016 36.840 85.136 1.641   -1.375 0.289  H30  VH0 58 
JKT H311 H311 H 0 0 N N N N N N 35.153 40.207 84.644 4.811   -3.279 1.331  H311 VH0 59 
JKT H312 H312 H 0 0 N N N N N N 34.327 38.650 84.992 3.823   -2.901 -0.101 H312 VH0 60 
JKT H32  H32  H 0 1 N N N N N N 34.430 40.237 87.390 5.173   -0.551 0.695  H32  VH0 61 
JKT H391 H391 H 0 0 N N N N N N 29.868 43.082 86.170 7.132   -1.069 -3.453 H11  BOC 62 
JKT H392 H392 H 0 0 N N N N N N 31.602 42.824 85.780 8.527   -2.165 -3.599 H12  BOC 63 
JKT H393 H393 H 0 0 N N N N N N 30.348 41.781 85.028 7.066   -2.694 -2.730 H13  BOC 64 
JKT H371 H371 H 0 0 N N N N N N 30.357 42.881 88.575 9.599   0.304  -1.027 H21  BOC 65 
JKT H372 H372 H 0 0 N N N N N N 31.163 41.413 89.224 10.006  -0.414 -2.604 H22  BOC 66 
JKT H373 H373 H 0 0 N N N N N N 32.099 42.593 88.245 8.612   0.682  -2.459 H23  BOC 67 
JKT H381 H381 H 0 0 N N N N N N 28.632 41.414 87.503 8.452   -3.225 -0.721 H31  BOC 68 
JKT H382 H382 H 0 0 N N N N N N 29.144 40.099 86.391 9.913   -2.696 -1.589 H32  BOC 69 
JKT H383 H383 H 0 0 N N N N N N 29.471 39.964 88.152 9.507   -1.977 -0.012 H33  BOC 70 
JKT H3   H3   H 0 1 N N N N N N 38.787 39.081 81.017 -1.977  4.499  -1.320 H3   V8W 71 
JKT H61C H61C H 0 0 N N N N N N 39.455 35.342 81.397 -1.616  3.924  2.413  H61C V8W 72 
JKT H62C H62C H 0 0 N N N N N N 37.824 35.217 82.139 0.056   4.392  1.976  H62C V8W 73 
JKT H41C H41C H 0 0 N N N N N N 37.366 37.826 79.055 0.120   6.296  -0.113 H41C V8W 74 
JKT H42C H42C H 0 0 N N N N N N 39.122 37.523 79.283 -1.531  6.699  -0.686 H42C V8W 75 
JKT H21N H21N H 0 0 N N N N N N 34.908 38.272 81.705 1.007   5.086  -3.311 H21N V8W 76 
JKT H22N H22N H 0 0 N N N N N N 35.775 37.117 80.943 -0.654  5.159  -3.302 H22N V8W 77 
JKT H51C H51C H 0 0 N N N N N N 36.747 35.825 80.164 -1.034  6.531  1.988  H51C V8W 78 
JKT H52C H52C H 0 0 N N N N N N 38.281 35.311 79.383 -2.557  5.851  1.324  H52C V8W 79 
JKT HOXT HOXT H 0 0 N N N N N N 35.261 39.799 80.428 0.772   2.679  -2.718 HOXT V8W 80 
JKT H1C  H1C  H 0 1 N N N N N N 36.742 39.413 82.098 1.064   4.358  -1.044 H1C  V8W 81 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JKT O13 C12  DOUB N N 1  
JKT C12 C14  SING N N 2  
JKT C12 N11  SING N N 3  
JKT C14 C15  SING N N 4  
JKT C15 C16  SING N N 5  
JKT C16 C17  SING N N 6  
JKT C17 C18  SING Y N 7  
JKT C17 C22  DOUB Y N 8  
JKT C18 C19  DOUB Y N 9  
JKT C19 C20  SING Y N 10 
JKT C20 C21  DOUB Y N 11 
JKT C21 C22  SING Y N 12 
JKT N11 C23  SING N N 13 
JKT N11 C10  SING N N 14 
JKT C23 C24  SING N N 15 
JKT C10 C8   SING N N 16 
JKT C10 C25  SING N N 17 
JKT C8  O9   DOUB N N 18 
JKT C8  N7   SING N N 19 
JKT N7  C3   SING N N 20 
JKT N7  C6   SING N N 21 
JKT C3  C1   SING N N 22 
JKT C3  C4   SING N N 23 
JKT C1  N2   SING N N 24 
JKT C1  OXT  SING N N 25 
JKT C4  C5   SING N N 26 
JKT C5  C6   SING N N 27 
JKT C25 C24  SING N N 28 
JKT C24 N26  SING N N 29 
JKT N26 N27  SING Y N 30 
JKT N26 C30  SING Y N 31 
JKT N27 N28  DOUB Y N 32 
JKT N28 C29  SING Y N 33 
JKT C30 C29  DOUB Y N 34 
JKT C29 C31  SING N N 35 
JKT C31 N32  SING N N 36 
JKT N32 C33  SING N N 37 
JKT C33 O34  DOUB N N 38 
JKT C33 O35  SING N N 39 
JKT O35 C36  SING N N 40 
JKT C36 C39  SING N N 41 
JKT C36 C37  SING N N 42 
JKT C36 C38  SING N N 43 
JKT C14 H141 SING N N 44 
JKT C14 H142 SING N N 45 
JKT C15 H151 SING N N 46 
JKT C15 H152 SING N N 47 
JKT C16 H161 SING N N 48 
JKT C16 H162 SING N N 49 
JKT C18 H18  SING N N 50 
JKT C22 H22  SING N N 51 
JKT C19 H19  SING N N 52 
JKT C20 H20  SING N N 53 
JKT C21 H21  SING N N 54 
JKT C23 H231 SING N N 55 
JKT C23 H232 SING N N 56 
JKT C10 H10  SING N N 57 
JKT C24 H24  SING N N 58 
JKT C25 H251 SING N N 59 
JKT C25 H252 SING N N 60 
JKT C3  H3   SING N N 61 
JKT C6  H61C SING N N 62 
JKT C6  H62C SING N N 63 
JKT C4  H41C SING N N 64 
JKT C4  H42C SING N N 65 
JKT N2  H21N SING N N 66 
JKT N2  H22N SING N N 67 
JKT C5  H51C SING N N 68 
JKT C5  H52C SING N N 69 
JKT C30 H30  SING N N 70 
JKT C31 H311 SING N N 71 
JKT C31 H312 SING N N 72 
JKT N32 H32  SING N N 73 
JKT C39 H391 SING N N 74 
JKT C39 H392 SING N N 75 
JKT C39 H393 SING N N 76 
JKT C37 H371 SING N N 77 
JKT C37 H372 SING N N 78 
JKT C37 H373 SING N N 79 
JKT C38 H381 SING N N 80 
JKT C38 H382 SING N N 81 
JKT C38 H383 SING N N 82 
JKT OXT HOXT SING N N 83 
JKT C1  H1C  SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JKT SMILES           ACDLabs              12.01 "O=C(OC(C)(C)C)NCc1nnn(c1)C4CN(C(=O)CCCc2ccccc2)C(C(=O)N3C(C(O)N)CCC3)C4"                                                                                                                                                            
JKT InChI            InChI                1.03  "InChI=1S/C28H41N7O5/c1-28(2,3)40-27(39)30-16-20-17-35(32-31-20)21-15-23(26(38)33-14-8-12-22(33)25(29)37)34(18-21)24(36)13-7-11-19-9-5-4-6-10-19/h4-6,9-10,17,21-23,25,37H,7-8,11-16,18,29H2,1-3H3,(H,30,39)/t21-,22-,23-,25+/m0/s1" 
JKT InChIKey         InChI                1.03  MVZCEONBTBQGTK-KELBGUDLSA-N                                                                                                                                                                                                          
JKT SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)OC(=O)NCc1cn(nn1)[C@H]2C[C@H](N(C2)C(=O)CCCc3ccccc3)C(=O)N4CCC[C@H]4[C@H](N)O"                                                                                                                                              
JKT SMILES           CACTVS               3.385 "CC(C)(C)OC(=O)NCc1cn(nn1)[CH]2C[CH](N(C2)C(=O)CCCc3ccccc3)C(=O)N4CCC[CH]4[CH](N)O"                                                                                                                                                  
JKT SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC(C)(C)OC(=O)NCc1cn(nn1)[C@H]2C[C@H](N(C2)C(=O)CCCc3ccccc3)C(=O)N4CCC[C@H]4[C@H](N)O"                                                                                                                                              
JKT SMILES           "OpenEye OEToolkits" 1.9.2 "CC(C)(C)OC(=O)NCc1cn(nn1)C2CC(N(C2)C(=O)CCCc3ccccc3)C(=O)N4CCCC4C(N)O"                                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JKT "SYSTEMATIC NAME" ACDLabs              12.01 "tert-butyl ({1-[(3S,5S)-5-({(2S)-2-[(R)-amino(hydroxy)methyl]pyrrolidin-1-yl}carbonyl)-1-(4-phenylbutanoyl)pyrrolidin-3-yl]-1H-1,2,3-triazol-4-yl}methyl)carbamate" 
JKT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "tert-butyl N-[[1-[(3S,5S)-5-[(2S)-2-[(R)-azanyl(oxidanyl)methyl]pyrrolidin-1-yl]carbonyl-1-(4-phenylbutanoyl)pyrrolidin-3-yl]-1,2,3-triazol-4-yl]methyl]carbamate"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JKT "Create component"         2012-10-01 EBI  
JKT "Modify subcomponent list" 2013-03-13 EBI  
JKT "Modify descriptor"        2014-09-05 RCSB 
JKT "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            JKT 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
