data_J3T
# 
_chem_comp.id                                    J3T 
_chem_comp.name                                  "[4-[(4~{S})-4-oxidanyl-5-oxidanylidene-1,3,2-dioxaborolan-2-yl]phenyl]methyl carbamimidothioate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H11 B N2 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-01-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        266.081 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     J3T 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6QIH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
J3T C2  C1  C 0 1 Y N N N N N -0.917 15.619 15.294 -1.588 -0.145 0.597  C2  J3T 1  
J3T C3  C2  C 0 1 Y N N N N N -2.067 15.730 14.388 -0.900 1.045  0.760  C3  J3T 2  
J3T C4  C3  C 0 1 Y N N N N N -2.106 15.088 13.106 0.462  1.092  0.548  C4  J3T 3  
J3T C6  C4  C 0 1 N N S N N N -1.456 11.447 10.232 4.845  -0.634 -0.570 C6  J3T 4  
J3T C7  C5  C 0 1 N N N N N N -2.206 12.686 9.437  4.787  0.834  -0.221 C7  J3T 5  
J3T C8  C6  C 0 1 Y N N N N N 0.186  14.242 13.586 0.450  -1.259 0.012  C8  J3T 6  
J3T C9  C7  C 0 1 Y N N N N N -0.315 14.914 14.464 -0.913 -1.295 0.226  C9  J3T 7  
J3T N1  N1  N 0 1 N N N N N N -2.726 15.794 20.210 -6.641 0.265  -1.059 N1  J3T 8  
J3T N   N2  N 0 1 N N N N N N -2.167 17.590 18.910 -5.871 -0.231 1.073  N   J3T 9  
J3T C   C8  C 0 1 N N N N N N -2.357 16.272 19.075 -5.611 0.055  -0.173 C   J3T 10 
J3T S   S1  S 0 1 N N N N N N -2.020 15.181 17.725 -3.940 0.172  -0.720 S   J3T 11 
J3T C1  C9  C 0 1 N N N N N N -1.076 16.280 16.559 -3.076 -0.190 0.829  C1  J3T 12 
J3T C5  C10 C 0 1 Y N N N N N -1.010 14.352 12.755 1.146  -0.062 0.169  C5  J3T 13 
J3T B   B1  B 0 1 N N N N N N -1.059 13.592 11.371 2.697  -0.014 -0.074 B   J3T 14 
J3T O   O1  O 0 1 N N N N N N -0.891 12.117 11.406 3.501  -1.119 -0.461 O   J3T 15 
J3T O1  O2  O 0 1 N N N N N N -0.307 11.011 9.594  5.694  -1.326 0.348  O1  J3T 16 
J3T O3  O3  O 0 1 N N N N N N -2.128 13.868 10.383 3.510  1.136  0.058  O3  J3T 17 
J3T O2  O4  O 0 1 N N N N N N -2.315 12.864 8.014  5.722  1.599  -0.198 O2  J3T 18 
J3T H1  H1  H 0 1 N N N N N N -2.917 16.318 14.699 -1.432 1.938  1.054  H1  J3T 19 
J3T H2  H2  H 0 1 N N N N N N -2.959 15.182 12.451 0.997  2.022  0.675  H2  J3T 20 
J3T H3  H3  H 0 1 N N N N N N -2.176 10.654 10.484 5.210  -0.764 -1.589 H3  J3T 21 
J3T H4  H4  H 0 1 N N N N N N 1.142  13.754 13.466 0.976  -2.157 -0.277 H4  J3T 22 
J3T H5  H5  H 0 1 N N N N N N 0.523  14.761 15.128 -1.453 -2.222 0.105  H5  J3T 23 
J3T H6  H6  H 0 1 N N N N N N -2.876 16.407 20.986 -7.561 0.201  -0.758 H6  J3T 24 
J3T H7  H7  H 0 1 N N N N N N -2.863 14.809 20.317 -6.448 0.478  -1.986 H7  J3T 25 
J3T H8  H8  H 0 1 N N N N N N -2.346 18.102 19.750 -6.791 -0.295 1.374  H8  J3T 26 
J3T H9  H9  H 0 1 N N N N N N -0.085 16.499 16.984 -3.359 -1.183 1.180  H9  J3T 27 
J3T H10 H10 H 0 1 N N N N N N -1.629 17.220 16.414 -3.349 0.551  1.580  H10 J3T 28 
J3T H11 H11 H 0 1 N N N N N N 0.082  10.301 10.091 5.747  -2.279 0.193  H11 J3T 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
J3T O2 C7  DOUB N N 1  
J3T C7 C6  SING N N 2  
J3T C7 O3  SING N N 3  
J3T O1 C6  SING N N 4  
J3T C6 O   SING N N 5  
J3T O3 B   SING N N 6  
J3T B  O   SING N N 7  
J3T B  C5  SING N N 8  
J3T C5 C4  DOUB Y N 9  
J3T C5 C8  SING Y N 10 
J3T C4 C3  SING Y N 11 
J3T C8 C9  DOUB Y N 12 
J3T C3 C2  DOUB Y N 13 
J3T C9 C2  SING Y N 14 
J3T C2 C1  SING N N 15 
J3T C1 S   SING N N 16 
J3T S  C   SING N N 17 
J3T N  C   DOUB N N 18 
J3T C  N1  SING N N 19 
J3T C3 H1  SING N N 20 
J3T C4 H2  SING N N 21 
J3T C6 H3  SING N N 22 
J3T C8 H4  SING N N 23 
J3T C9 H5  SING N N 24 
J3T N1 H6  SING N N 25 
J3T N1 H7  SING N N 26 
J3T N  H8  SING N N 27 
J3T C1 H9  SING N N 28 
J3T C1 H10 SING N N 29 
J3T O1 H11 SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
J3T InChI            InChI                1.03  "InChI=1S/C10H11BN2O4S/c12-10(13)18-5-6-1-3-7(4-2-6)11-16-8(14)9(15)17-11/h1-4,8,14H,5H2,(H3,12,13)/t8-/m0/s1" 
J3T InChIKey         InChI                1.03  OMOMPYVBIXPZLY-QMMMGPOBSA-N                                                                                    
J3T SMILES_CANONICAL CACTVS               3.385 "NC(=N)SCc1ccc(cc1)B2O[C@H](O)C(=O)O2"                                                                         
J3T SMILES           CACTVS               3.385 "NC(=N)SCc1ccc(cc1)B2O[CH](O)C(=O)O2"                                                                          
J3T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[H]/N=C(/N)\SCc1ccc(cc1)B2O[C@@H](C(=O)O2)O"                                                                  
J3T SMILES           "OpenEye OEToolkits" 2.0.6 "B1(OC(C(=O)O1)O)c2ccc(cc2)CSC(=N)N"                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           J3T 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "[4-[(4~{S})-4-oxidanyl-5-oxidanylidene-1,3,2-dioxaborolan-2-yl]phenyl]methyl carbamimidothioate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
J3T "Create component" 2019-01-18 EBI  
J3T "Initial release"  2020-02-05 RCSB 
J3T "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            J3T 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
