data_J0T
# 
_chem_comp.id                                    J0T 
_chem_comp.name                                  "(2~{S},3~{R},4~{S},5~{R},6~{R})-4-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-[(2~{R})-3-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-oxidanyl-propyl]sulfanyl-6-(hydroxymethyl)oxane-3,5-diol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H26 F2 N6 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-01-11 
_chem_comp.pdbx_modified_date                    2019-01-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        560.573 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     J0T 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6QGF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
J0T C02 C1  C 0 1 Y N N -13.185 8.563  -0.055 -7.284  1.672  -0.057 C02 J0T 1  
J0T C03 C2  C 0 1 Y N N -11.941 8.772  -0.672 -6.764  2.425  -1.107 C03 J0T 2  
J0T C05 C3  C 0 1 Y N N -10.773 9.014  1.457  -8.793  3.694  -1.200 C05 J0T 3  
J0T C06 C4  C 0 1 Y N N -12.016 8.779  2.039  -9.316  2.948  -0.156 C06 J0T 4  
J0T C08 C5  C 0 1 Y N N -14.362 8.315  -0.804 -6.472  0.593  0.559  C08 J0T 5  
J0T C12 C6  C 0 1 Y N N -15.701 8.281  -0.427 -5.208  0.215  0.207  C12 J0T 6  
J0T C14 C7  C 0 1 N N R -18.372 6.573  -0.844 -3.663  -2.656 0.000  C14 J0T 7  
J0T C15 C8  C 0 1 N N S -17.872 7.796  -1.649 -3.605  -1.527 1.034  C15 J0T 8  
J0T C16 C9  C 0 1 N N R -18.689 9.055  -1.255 -2.468  -0.569 0.664  C16 J0T 9  
J0T C24 C10 C 0 1 N N N -22.766 9.636  -1.175 1.656   -1.296 0.193  C24 J0T 10 
J0T C33 C11 C 0 1 Y N N -28.785 9.305  3.000  8.608   0.805  0.277  C33 J0T 11 
J0T C35 C12 C 0 1 Y N N -30.782 9.752  4.325  10.622  2.077  -0.035 C35 J0T 12 
J0T C37 C13 C 0 1 Y N N -29.498 7.853  4.848  10.321  0.777  1.960  C37 J0T 13 
J0T C01 C14 C 0 1 Y N N -13.197 8.526  1.339  -8.566  1.939  0.418  C01 J0T 14 
J0T C04 C15 C 0 1 Y N N -10.771 8.997  0.061  -7.521  3.431  -1.673 C04 J0T 15 
J0T C13 C16 C 0 1 N N R -19.882 6.440  -1.091 -2.305  -3.361 -0.052 C13 J0T 16 
J0T C17 C17 C 0 1 N N S -20.159 8.760  -1.481 -1.155  -1.353 0.587  C17 J0T 17 
J0T C20 C18 C 0 1 N N N -20.415 5.295  -0.192 -2.337  -4.452 -1.125 C20 J0T 18 
J0T C25 C19 C 0 1 N N R -23.749 9.928  -0.053 2.893   -0.491 -0.209 C25 J0T 19 
J0T C27 C20 C 0 1 N N N -25.119 9.377  -0.503 4.134   -1.382 -0.114 C27 J0T 20 
J0T C30 C21 C 0 1 Y N N -27.851 9.637  1.920  7.276   0.366  -0.208 C30 J0T 21 
J0T C31 C22 C 0 1 Y N N -26.807 8.925  1.352  6.406   -0.469 0.430  C31 J0T 22 
J0T C34 C23 C 0 1 Y N N -29.912 10.093 3.290  9.384   1.667  -0.495 C34 J0T 23 
J0T C36 C24 C 0 1 Y N N -30.616 8.624  5.137  11.089  1.632  1.191  C36 J0T 24 
J0T C38 C25 C 0 1 Y N N -28.619 8.181  3.807  9.084   0.362  1.509  C38 J0T 25 
J0T F07 F1  F 0 1 N N N -12.043 8.727  3.386  -10.560 3.209  0.302  F07 J0T 26 
J0T F39 F2  F 0 1 N N N -31.841 10.537 4.556  11.376  2.912  -0.782 F39 J0T 27 
J0T N09 N1  N 0 1 Y N N -14.366 7.971  -2.158 -6.831  -0.206 1.580  N09 J0T 28 
J0T N10 N2  N 0 1 Y N N -15.555 7.784  -2.583 -5.862  -1.012 1.836  N10 J0T 29 
J0T N11 N3  N 0 1 Y N N -16.433 7.954  -1.550 -4.877  -0.799 1.037  N11 J0T 30 
J0T N28 N4  N 0 1 Y N N -26.242 9.725  0.348  5.331   -0.581 -0.383 N28 J0T 31 
J0T N29 N5  N 0 1 Y N N -26.956 10.886 0.305  5.537   0.133  -1.433 N29 J0T 32 
J0T N32 N6  N 0 1 Y N N -27.864 10.849 1.211  6.681   0.716  -1.363 N32 J0T 33 
J0T O18 O1  O 0 1 N N N -20.509 7.639  -0.677 -1.287  -2.409 -0.371 O18 J0T 34 
J0T O19 O2  O 0 1 N N N -18.140 6.807  0.550  -3.968  -2.112 -1.285 O19 J0T 35 
J0T O21 O3  O 0 1 N N N -21.776 5.129  -0.507 -1.112  -5.186 -1.094 O21 J0T 36 
J0T O22 O4  O 0 1 N N N -18.219 10.044 -2.134 -2.359  0.450  1.661  O22 J0T 37 
J0T O26 O5  O 0 1 N N N -23.357 9.237  1.103  2.743   -0.026 -1.552 O26 J0T 38 
J0T S23 S1  S 0 1 N N N -21.093 10.162 -0.826 0.185   -0.241 0.080  S23 J0T 39 
J0T H1  H1  H 0 1 N N N -11.886 8.759  -1.750 -5.770  2.222  -1.478 H1  J0T 40 
J0T H2  H2  H 0 1 N N N -9.882  9.195  2.039  -9.381  4.482  -1.646 H2  J0T 41 
J0T H3  H3  H 0 1 N N N -16.094 8.474  0.560  -4.598  0.641  -0.576 H3  J0T 42 
J0T H4  H4  H 0 1 N N N -17.855 5.665  -1.189 -4.434  -3.371 0.285  H4  J0T 43 
J0T H5  H5  H 0 1 N N N -18.110 7.591  -2.703 -3.422  -1.947 2.023  H5  J0T 44 
J0T H6  H6  H 0 1 N N N -18.504 9.311  -0.201 -2.677  -0.112 -0.303 H6  J0T 45 
J0T H7  H7  H 0 1 N N N -23.111 10.155 -2.081 1.544   -2.149 -0.477 H7  J0T 46 
J0T H8  H8  H 0 1 N N N -22.758 8.551  -1.355 1.771   -1.651 1.217  H8  J0T 47 
J0T H9  H9  H 0 1 N N N -29.300 6.974  5.443  10.690  0.433  2.915  H9  J0T 48 
J0T H10 H10 H 0 1 N N N -14.110 8.304  1.871  -8.974  1.357  1.232  H10 J0T 49 
J0T H11 H11 H 0 1 N N N -9.843  9.162  -0.466 -7.117  4.015  -2.488 H11 J0T 50 
J0T H12 H12 H 0 1 N N N -20.078 6.213  -2.149 -2.091  -3.810 0.918  H12 J0T 51 
J0T H13 H13 H 0 1 N N N -20.404 8.640  -2.547 -0.926  -1.776 1.565  H13 J0T 52 
J0T H14 H14 H 0 1 N N N -19.863 4.366  -0.396 -3.170  -5.127 -0.931 H14 J0T 53 
J0T H15 H15 H 0 1 N N N -20.302 5.563  0.869  -2.462  -3.993 -2.105 H15 J0T 54 
J0T H16 H16 H 0 1 N N N -23.819 11.012 0.119  3.006   0.361  0.460  H16 J0T 55 
J0T H17 H17 H 0 1 N N N -25.325 9.764  -1.512 4.199   -1.808 0.887  H17 J0T 56 
J0T H18 H18 H 0 1 N N N -25.048 8.280  -0.539 4.062   -2.185 -0.847 H18 J0T 57 
J0T H19 H19 H 0 1 N N N -26.486 7.933  1.632  6.547   -0.945 1.389  H19 J0T 58 
J0T H20 H20 H 0 1 N N N -30.107 10.977 2.702  9.020   2.013  -1.451 H20 J0T 59 
J0T H21 H21 H 0 1 N N N -31.306 8.372  5.929  12.057  1.954  1.547  H21 J0T 60 
J0T H22 H22 H 0 1 N N N -27.775 7.533  3.622  8.486   -0.306 2.111  H22 J0T 61 
J0T H23 H23 H 0 1 N N N -18.444 6.060  1.052  -4.018  -2.772 -1.990 H23 J0T 62 
J0T H24 H24 H 0 1 N N N -22.142 4.432  0.025  -1.062  -5.895 -1.750 H24 J0T 63 
J0T H25 H25 H 0 1 N N N -18.671 10.862 -1.962 -1.657  1.093  1.490  H25 J0T 64 
J0T H26 H26 H 0 1 N N N -23.971 9.419  1.805  2.638   -0.733 -2.204 H26 J0T 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
J0T N10 N09 DOUB Y N 1  
J0T N10 N11 SING Y N 2  
J0T N09 C08 SING Y N 3  
J0T O22 C16 SING N N 4  
J0T C15 N11 SING N N 5  
J0T C15 C16 SING N N 6  
J0T C15 C14 SING N N 7  
J0T N11 C12 SING Y N 8  
J0T C17 C16 SING N N 9  
J0T C17 S23 SING N N 10 
J0T C17 O18 SING N N 11 
J0T C24 S23 SING N N 12 
J0T C24 C25 SING N N 13 
J0T C13 C14 SING N N 14 
J0T C13 O18 SING N N 15 
J0T C13 C20 SING N N 16 
J0T C14 O19 SING N N 17 
J0T C08 C12 DOUB Y N 18 
J0T C08 C02 SING N N 19 
J0T C03 C02 DOUB Y N 20 
J0T C03 C04 SING Y N 21 
J0T O21 C20 SING N N 22 
J0T C27 C25 SING N N 23 
J0T C27 N28 SING N N 24 
J0T C02 C01 SING Y N 25 
J0T C25 O26 SING N N 26 
J0T C04 C05 DOUB Y N 27 
J0T N29 N28 SING Y N 28 
J0T N29 N32 DOUB Y N 29 
J0T N28 C31 SING Y N 30 
J0T N32 C30 SING Y N 31 
J0T C01 C06 DOUB Y N 32 
J0T C31 C30 DOUB Y N 33 
J0T C05 C06 SING Y N 34 
J0T C30 C33 SING N N 35 
J0T C06 F07 SING N N 36 
J0T C33 C34 DOUB Y N 37 
J0T C33 C38 SING Y N 38 
J0T C34 C35 SING Y N 39 
J0T C38 C37 DOUB Y N 40 
J0T C35 F39 SING N N 41 
J0T C35 C36 DOUB Y N 42 
J0T C37 C36 SING Y N 43 
J0T C03 H1  SING N N 44 
J0T C05 H2  SING N N 45 
J0T C12 H3  SING N N 46 
J0T C14 H4  SING N N 47 
J0T C15 H5  SING N N 48 
J0T C16 H6  SING N N 49 
J0T C24 H7  SING N N 50 
J0T C24 H8  SING N N 51 
J0T C37 H9  SING N N 52 
J0T C01 H10 SING N N 53 
J0T C04 H11 SING N N 54 
J0T C13 H12 SING N N 55 
J0T C17 H13 SING N N 56 
J0T C20 H14 SING N N 57 
J0T C20 H15 SING N N 58 
J0T C25 H16 SING N N 59 
J0T C27 H17 SING N N 60 
J0T C27 H18 SING N N 61 
J0T C31 H19 SING N N 62 
J0T C34 H20 SING N N 63 
J0T C36 H21 SING N N 64 
J0T C38 H22 SING N N 65 
J0T O19 H23 SING N N 66 
J0T O21 H24 SING N N 67 
J0T O22 H25 SING N N 68 
J0T O26 H26 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
J0T InChI            InChI                1.03  
"InChI=1S/C25H26F2N6O5S/c26-16-5-1-3-14(7-16)19-10-32(30-28-19)9-18(35)13-39-25-24(37)22(23(36)21(12-34)38-25)33-11-20(29-31-33)15-4-2-6-17(27)8-15/h1-8,10-11,18,21-25,34-37H,9,12-13H2/t18-,21-,22+,23+,24-,25+/m1/s1" 
J0T InChIKey         InChI                1.03  QSKQHLBUOMOHKU-LAMOWGQJSA-N 
J0T SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@@H](SC[C@H](O)Cn2cc(nn2)c3cccc(F)c3)[C@H](O)[C@H]([C@H]1O)n4cc(nn4)c5cccc(F)c5" 
J0T SMILES           CACTVS               3.385 "OC[CH]1O[CH](SC[CH](O)Cn2cc(nn2)c3cccc(F)c3)[CH](O)[CH]([CH]1O)n4cc(nn4)c5cccc(F)c5" 
J0T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(cc(c1)F)c2cn(nn2)C[C@H](CS[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)n4cc(nn4)c5cccc(c5)F)O)O" 
J0T SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc(cc(c1)F)c2cn(nn2)CC(CSC3C(C(C(C(O3)CO)O)n4cc(nn4)c5cccc(c5)F)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
J0T "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S},3~{R},4~{S},5~{R},6~{R})-4-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-[(2~{R})-3-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-oxidanyl-propyl]sulfanyl-6-(hydroxymethyl)oxane-3,5-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
J0T "Create component" 2019-01-11 EBI  
J0T "Initial release"  2019-01-23 RCSB 
# 
