data_H9T
# 
_chem_comp.id                                    H9T 
_chem_comp.name                                  "(1~{S},2~{S},3~{S},4~{S},5~{R},6~{S})-5-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3,4-triol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H13 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-12-03 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        175.182 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     H9T 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6IBT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
H9T C1  C1  C 0 1 N N S N N N 62.184 -14.871 -39.780 0.377  -1.615 0.258  C1  H9T 1  
H9T C2  C2  C 0 1 N N S N N N 61.975 -15.124 -38.294 -1.092 -1.411 0.593  C2  H9T 2  
H9T C3  C3  C 0 1 N N S N N N 60.597 -15.714 -37.947 -1.727 -0.046 0.423  C3  H9T 3  
H9T C4  C4  C 0 1 N N S N N N 59.637 -15.810 -39.135 -0.936 0.854  -0.503 C4  H9T 4  
H9T C5  C5  C 0 1 N N S N N N 59.643 -14.482 -39.846 0.545  0.859  -0.194 C5  H9T 5  
H9T C6  C6  C 0 1 N N R N N N 61.005 -14.205 -40.495 1.185  -0.505 -0.396 C6  H9T 6  
H9T O8  O1  O 0 1 N N N N N N 59.249 -13.495 -38.875 0.732  1.276  1.160  O8  H9T 7  
H9T O9  O2  O 0 1 N N N N N N 58.293 -16.033 -38.699 -1.435 2.188  -0.385 O9  H9T 8  
H9T O10 O3  O 0 1 N N N N N N 60.775 -17.018 -37.414 -3.043 -0.213 -0.110 O10 H9T 9  
H9T C7  C7  C 0 1 N N N N N N 61.194 -12.710 -40.655 2.580  -0.496 0.233  C7  H9T 10 
H9T O11 O4  O 0 1 N N N N N N 62.411 -12.412 -41.350 3.414  0.428  -0.471 O11 H9T 11 
H9T N1  N1  N 0 1 N N N N N N 62.490 -16.202 -40.349 -0.696 -2.197 -0.573 N1  H9T 12 
H9T H1  H1  H 0 1 N N N N N N 63.066 -14.224 -39.898 0.944  -2.297 0.891  H1  H9T 13 
H9T H2  H2  H 0 1 N N N N N N 62.825 -15.224 -37.604 -1.472 -1.987 1.437  H2  H9T 14 
H9T H3  H3  H 0 1 N N N N N N 60.134 -15.067 -37.187 -1.801 0.432  1.399  H3  H9T 15 
H9T H4  H4  H 0 1 N N N N N N 59.970 -16.605 -39.818 -1.078 0.515  -1.529 H4  H9T 16 
H9T H5  H5  H 0 1 N N N N N N 58.890 -14.518 -40.647 1.039  1.574  -0.852 H5  H9T 17 
H9T H6  H6  H 0 1 N N N N N N 60.966 -14.633 -41.508 1.282  -0.695 -1.464 H6  H9T 18 
H9T H7  H7  H 0 1 N N N N N N 58.401 -13.726 -38.514 0.392  2.161  1.350  H7  H9T 19 
H9T H8  H8  H 0 1 N N N N N N 58.242 -16.865 -38.243 -0.979 2.829  -0.948 H8  H9T 20 
H9T H9  H9  H 0 1 N N N N N N 61.369 -16.980 -36.674 -3.518 0.617  -0.249 H9  H9T 21 
H9T H10 H10 H 0 1 N N N N N N 61.226 -12.244 -39.659 2.506  -0.195 1.278  H10 H9T 22 
H9T H11 H11 H 0 1 N N N N N N 60.346 -12.300 -41.224 3.012  -1.495 0.172  H11 H9T 23 
H9T H12 H12 H 0 1 N N N N N N 62.504 -11.471 -41.436 4.315  0.485  -0.126 H12 H9T 24 
H9T H13 H13 H 0 1 N N N N N N 61.824 -16.741 -40.864 -0.821 -1.669 -1.424 H13 H9T 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
H9T O11 C7  SING N N 1  
H9T C7  C6  SING N N 2  
H9T C6  C5  SING N N 3  
H9T C6  C1  SING N N 4  
H9T N1  C1  SING N N 5  
H9T C5  C4  SING N N 6  
H9T C5  O8  SING N N 7  
H9T C1  C2  SING N N 8  
H9T C4  O9  SING N N 9  
H9T C4  C3  SING N N 10 
H9T C2  C3  SING N N 11 
H9T C3  O10 SING N N 12 
H9T C2  N1  SING N N 13 
H9T C1  H1  SING N N 14 
H9T C2  H2  SING N N 15 
H9T C3  H3  SING N N 16 
H9T C4  H4  SING N N 17 
H9T C5  H5  SING N N 18 
H9T C6  H6  SING N N 19 
H9T O8  H7  SING N N 20 
H9T O9  H8  SING N N 21 
H9T O10 H9  SING N N 22 
H9T C7  H10 SING N N 23 
H9T C7  H11 SING N N 24 
H9T O11 H12 SING N N 25 
H9T N1  H13 SING N N 26 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
H9T InChI            InChI                1.03  "InChI=1S/C7H13NO4/c9-1-2-3-4(8-3)6(11)7(12)5(2)10/h2-12H,1H2/t2-,3-,4-,5-,6-,7-/m0/s1" 
H9T InChIKey         InChI                1.03  GPIFFOGPRPKRHS-CLYCCYFHSA-N                                                             
H9T SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1[C@H](O)[C@H](O)[C@@H](O)[C@H]2N[C@@H]12"                                     
H9T SMILES           CACTVS               3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)[CH]2N[CH]12"                                              
H9T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C([C@H]1[C@H]2[C@H](N2)[C@@H]([C@H]([C@H]1O)O)O)O"                                     
H9T SMILES           "OpenEye OEToolkits" 2.0.6 "C(C1C2C(N2)C(C(C1O)O)O)O"                                                              
# 
_pdbx_chem_comp_identifier.comp_id           H9T 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "(1~{S},2~{S},3~{S},4~{S},5~{R},6~{S})-5-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3,4-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
H9T "Create component" 2018-12-03 EBI  
H9T "Initial release"  2019-10-09 RCSB 
H9T "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            H9T 
_pdbx_chem_comp_pcm.modified_residue_id                ASP 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C2 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OD2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
