data_H8T
# 
_chem_comp.id                                    H8T 
_chem_comp.name                                  "Virginiamycin M" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H33 N3 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-11-26 
_chem_comp.pdbx_modified_date                    2022-12-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        523.578 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     H8T 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6I9R 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
H8T C1  C1  C 0 1 Y N N 257.859 306.591 277.966 -3.829 1.276  -0.175 C1  H8T 1  
H8T C10 C2  C 0 1 Y N N 253.791 308.376 281.678 1.133  4.299  -0.162 C10 H8T 2  
H8T C12 C3  C 0 1 Y N N 254.362 306.150 281.439 -0.974 4.772  -0.418 C12 H8T 3  
H8T C13 C4  C 0 1 N N N 253.188 309.707 282.337 2.641  4.393  -0.207 C13 H8T 4  
H8T C14 C5  C 0 1 N N N 254.363 310.538 282.952 3.239  3.056  0.154  C14 H8T 5  
H8T C16 C6  C 0 1 N N N 254.197 312.105 282.805 3.882  2.192  -0.896 C16 H8T 6  
H8T C17 C7  C 0 1 N N S 255.555 312.725 282.483 4.755  1.123  -0.227 C17 H8T 7  
H8T C19 C8  C 0 1 N N N 255.888 312.466 280.966 4.383  -0.233 -0.771 C19 H8T 8  
H8T C2  C9  C 0 1 Y N N 259.106 307.203 278.250 -5.043 1.543  -0.763 C2  H8T 9  
H8T C20 C10 C 0 1 N N N 257.353 312.302 280.466 4.197  -1.258 0.053  C20 H8T 10 
H8T C21 C11 C 0 1 N N N 258.506 312.387 281.417 4.376  -1.087 1.540  C21 H8T 11 
H8T C22 C12 C 0 1 N N N 257.588 312.053 278.960 3.790  -2.569 -0.485 C22 H8T 12 
H8T C23 C13 C 0 1 N N N 258.881 312.556 278.258 3.454  -3.539 0.356  C23 H8T 13 
H8T C24 C14 C 0 1 N N N 259.059 312.297 276.766 2.879  -4.835 -0.163 C24 H8T 14 
H8T C26 C15 C 0 1 N N N 258.876 310.381 275.177 0.534  -4.421 -0.564 C26 H8T 15 
H8T C28 C16 C 0 1 N N N 259.148 308.833 275.006 -0.844 -4.195 -0.111 C28 H8T 16 
H8T C29 C17 C 0 1 N N N 258.621 308.035 273.702 -1.796 -3.823 -0.966 C29 H8T 17 
H8T C3  C18 C 0 1 Y N N 259.017 308.148 279.371 -5.085 2.917  -1.024 C3  H8T 18 
H8T C30 C19 C 0 1 N N R 258.873 306.524 273.538 -3.187 -3.521 -0.477 C30 H8T 19 
H8T C31 C20 C 0 1 N N N 260.221 306.167 274.193 -3.765 -4.762 0.206  C31 H8T 20 
H8T C32 C21 C 0 1 N N R 257.664 305.783 274.129 -3.159 -2.365 0.516  C32 H8T 21 
H8T C33 C22 C 0 1 N N N 257.356 304.468 273.356 -1.706 -1.994 0.816  C33 H8T 22 
H8T C34 C23 C 0 1 N N N 258.534 303.509 273.341 -1.121 -1.224 -0.369 C34 H8T 23 
H8T C35 C24 C 0 1 N N N 256.174 303.757 274.044 -1.652 -1.118 2.070  C35 H8T 24 
H8T C37 C25 C 0 1 N N N 257.344 306.559 276.449 -3.302 -0.012 0.259  C37 H8T 25 
H8T C4  C26 C 0 1 Y N N 257.540 307.947 279.948 -3.917 3.460  -0.605 C4  H8T 26 
H8T C6  C27 C 0 1 N N N 255.514 306.346 279.136 -1.923 2.580  0.457  C6  H8T 27 
H8T C8  C28 C 0 1 Y N N 254.755 306.918 280.371 -0.863 3.524  0.112  C8  H8T 28 
H8T N25 N1  N 0 1 N N N 259.293 310.872 276.552 1.469  -4.912 0.288  N25 H8T 29 
H8T N5  N2  N 0 1 Y N N 256.885 306.904 279.005 -3.138 2.470  -0.080 N5  H8T 30 
H8T N9  N3  N 0 1 Y N N 254.409 308.318 280.510 0.470  3.280  0.286  N9  H8T 31 
H8T O11 O1  O 0 1 Y N N 253.746 307.037 282.285 0.278  5.238  -0.591 O11 H8T 32 
H8T O15 O2  O 0 1 N N N 255.299 310.030 283.482 3.201  2.675  1.299  O15 H8T 33 
H8T O18 O3  O 0 1 N N N 255.517 314.088 282.727 6.131  1.388  -0.506 O18 H8T 34 
H8T O27 O4  O 0 1 N N N 258.384 311.073 274.327 0.840  -4.166 -1.713 O27 H8T 35 
H8T O36 O5  O 0 1 N N N 257.831 305.485 275.504 -3.848 -1.204 -0.025 O36 H8T 36 
H8T O38 O6  O 0 1 N N N 256.568 307.406 276.110 -2.289 -0.006 0.932  O38 H8T 37 
H8T O7  O7  O 0 1 N N N 255.057 305.553 278.392 -1.663 1.793  1.346  O7  H8T 38 
H8T H1  H1  H 0 1 N N N 254.505 305.089 281.581 -1.891 5.290  -0.655 H1  H8T 39 
H8T H2  H2  H 0 1 N N N 252.677 310.303 281.567 2.957  4.674  -1.212 H2  H8T 40 
H8T H3  H3  H 0 1 N N N 252.472 309.437 283.127 2.979  5.147  0.503  H3  H8T 41 
H8T H4  H4  H 0 1 N N N 253.815 312.525 283.747 3.108  1.707  -1.490 H4  H8T 42 
H8T H5  H5  H 0 1 N N N 253.490 312.326 281.992 4.503  2.811  -1.544 H5  H8T 43 
H8T H6  H6  H 0 1 N N N 256.326 312.236 283.096 4.591  1.141  0.850  H6  H8T 44 
H8T H7  H7  H 0 1 N N N 255.079 312.400 280.254 4.262  -0.369 -1.839 H7  H8T 45 
H8T H8  H8  H 0 1 N N N 260.016 306.998 277.705 -5.819 0.825  -0.983 H8  H8T 46 
H8T H9  H9  H 0 1 N N N 258.130 312.567 282.435 3.427  -0.794 1.988  H9  H8T 47 
H8T H10 H10 H 0 1 N N N 259.069 311.442 281.396 4.708  -2.029 1.977  H10 H8T 48 
H8T H11 H11 H 0 1 N N N 259.167 313.214 281.119 5.121  -0.315 1.729  H11 H8T 49 
H8T H12 H12 H 0 1 N N N 256.843 311.522 278.386 3.766  -2.729 -1.553 H12 H8T 50 
H8T H13 H13 H 0 1 N N N 259.641 313.080 278.818 3.541  -3.380 1.423  H13 H8T 51 
H8T H14 H14 H 0 1 N N N 259.920 312.872 276.393 2.921  -4.849 -1.252 H14 H8T 52 
H8T H15 H15 H 0 1 N N N 258.151 312.606 276.228 3.443  -5.677 0.239  H15 H8T 53 
H8T H16 H16 H 0 1 N N N 259.694 308.301 275.771 -1.097 -4.339 0.931  H16 H8T 54 
H8T H17 H17 H 0 1 N N N 258.083 308.570 272.933 -1.569 -3.721 -2.019 H17 H8T 55 
H8T H18 H18 H 0 1 N N N 259.779 308.826 279.726 -5.906 3.451  -1.480 H18 H8T 56 
H8T H19 H19 H 0 1 N N N 258.934 306.294 272.464 -3.818 -3.253 -1.325 H19 H8T 57 
H8T H20 H20 H 0 1 N N N 260.410 305.089 274.081 -3.134 -5.038 1.051  H20 H8T 58 
H8T H21 H21 H 0 1 N N N 261.027 306.733 273.704 -4.772 -4.546 0.561  H21 H8T 59 
H8T H22 H22 H 0 1 N N N 260.189 306.424 275.262 -3.800 -5.586 -0.506 H22 H8T 60 
H8T H23 H23 H 0 1 N N N 256.789 306.439 274.012 -3.648 -2.674 1.440  H23 H8T 61 
H8T H24 H24 H 0 1 N N N 257.074 304.718 272.323 -1.126 -2.902 0.982  H24 H8T 62 
H8T H25 H25 H 0 1 N N N 259.394 303.992 272.854 -0.390 -0.501 -0.008 H25 H8T 63 
H8T H26 H26 H 0 1 N N N 258.801 303.240 274.374 -0.635 -1.922 -1.052 H26 H8T 64 
H8T H27 H27 H 0 1 N N N 258.260 302.601 272.784 -1.921 -0.701 -0.893 H27 H8T 65 
H8T H28 H28 H 0 1 N N N 255.305 304.430 274.069 -2.586 -0.565 2.167  H28 H8T 66 
H8T H29 H29 H 0 1 N N N 255.917 302.847 273.483 -1.510 -1.749 2.948  H29 H8T 67 
H8T H30 H30 H 0 1 N N N 256.457 303.486 275.072 -0.821 -0.418 1.988  H30 H8T 68 
H8T H31 H31 H 0 1 N N N 257.096 308.431 280.805 -3.647 4.503  -0.675 H31 H8T 69 
H8T H32 H32 H 0 1 N N N 259.691 310.274 277.247 1.227  -5.293 1.147  H32 H8T 70 
H8T H33 H33 H 0 1 N N N 255.316 314.241 283.643 6.742  0.749  -0.112 H33 H8T 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
H8T C34 C33 SING N N 1  
H8T C33 C35 SING N N 2  
H8T C33 C32 SING N N 3  
H8T C30 C29 SING N N 4  
H8T C30 C32 SING N N 5  
H8T C30 C31 SING N N 6  
H8T C29 C28 DOUB N E 7  
H8T C32 O36 SING N N 8  
H8T O27 C26 DOUB N N 9  
H8T C28 C26 SING N N 10 
H8T C26 N25 SING N N 11 
H8T O36 C37 SING N N 12 
H8T O38 C37 DOUB N N 13 
H8T C37 C1  SING N N 14 
H8T N25 C24 SING N N 15 
H8T C24 C23 SING N N 16 
H8T C1  C2  DOUB Y N 17 
H8T C1  N5  SING Y N 18 
H8T C2  C3  SING Y N 19 
H8T C23 C22 DOUB N E 20 
H8T O7  C6  DOUB N N 21 
H8T C22 C20 SING N N 22 
H8T N5  C6  SING N N 23 
H8T N5  C4  SING Y N 24 
H8T C6  C8  SING N N 25 
H8T C3  C4  DOUB Y N 26 
H8T C8  N9  SING Y N 27 
H8T C8  C12 DOUB Y N 28 
H8T C20 C19 DOUB N E 29 
H8T C20 C21 SING N N 30 
H8T N9  C10 DOUB Y N 31 
H8T C19 C17 SING N N 32 
H8T C12 O11 SING Y N 33 
H8T C10 O11 SING Y N 34 
H8T C10 C13 SING N N 35 
H8T C13 C14 SING N N 36 
H8T C17 O18 SING N N 37 
H8T C17 C16 SING N N 38 
H8T C16 C14 SING N N 39 
H8T C14 O15 DOUB N N 40 
H8T C12 H1  SING N N 41 
H8T C13 H2  SING N N 42 
H8T C13 H3  SING N N 43 
H8T C16 H4  SING N N 44 
H8T C16 H5  SING N N 45 
H8T C17 H6  SING N N 46 
H8T C19 H7  SING N N 47 
H8T C2  H8  SING N N 48 
H8T C21 H9  SING N N 49 
H8T C21 H10 SING N N 50 
H8T C21 H11 SING N N 51 
H8T C22 H12 SING N N 52 
H8T C23 H13 SING N N 53 
H8T C24 H14 SING N N 54 
H8T C24 H15 SING N N 55 
H8T C28 H16 SING N N 56 
H8T C29 H17 SING N N 57 
H8T C3  H18 SING N N 58 
H8T C30 H19 SING N N 59 
H8T C31 H20 SING N N 60 
H8T C31 H21 SING N N 61 
H8T C31 H22 SING N N 62 
H8T C32 H23 SING N N 63 
H8T C33 H24 SING N N 64 
H8T C34 H25 SING N N 65 
H8T C34 H26 SING N N 66 
H8T C34 H27 SING N N 67 
H8T C35 H28 SING N N 68 
H8T C35 H29 SING N N 69 
H8T C35 H30 SING N N 70 
H8T C4  H31 SING N N 71 
H8T N25 H32 SING N N 72 
H8T O18 H33 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
H8T InChI            InChI                1.06  "InChI=1S/C28H33N3O7/c1-17(2)26-19(4)9-10-24(34)29-11-5-7-18(3)13-20(32)14-21(33)15-25-30-22(16-37-25)27(35)31-12-6-8-23(31)28(36)38-26/h5-10,12-13,16-17,19-20,26,32H,11,14-15H2,1-4H3,(H,29,34)/b7-5+,10-9+,18-13+/t19-,20-,26-/m1/s1" 
H8T InChIKey         InChI                1.06  CNTGCXRBDCXZRN-FQTGFAPKSA-N                                                                                                                                                                                                              
H8T SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@H]1OC(=O)c2cccn2C(=O)c3coc(CC(=O)C[C@H](O)/C=C(C)/C=C/CNC(=O)/C=C/[C@H]1C)n3"                                                                                                                                                   
H8T SMILES           CACTVS               3.385 "CC(C)[CH]1OC(=O)c2cccn2C(=O)c3coc(CC(=O)C[CH](O)C=C(C)C=CCNC(=O)C=C[CH]1C)n3"                                                                                                                                                           
H8T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1/C=C/C(=O)NC/C=C/C(=C/[C@H](CC(=O)Cc2nc(co2)C(=O)n3cccc3C(=O)O[C@@H]1C(C)C)O)/C"                                                                                                                                                
H8T SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C=CC(=O)NCC=CC(=CC(CC(=O)Cc2nc(co2)C(=O)n3cccc3C(=O)OC1C(C)C)O)C"                                                                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           H8T 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(10~{R},11~{R},12~{E},17~{E},19~{E},21~{S})-11,19-dimethyl-21-oxidanyl-10-propan-2-yl-9,26-dioxa-3,15,28-triazatricyclo[23.2.1.0^{3,7}]octacosa-1(27),4,6,12,17,19,25(28)-heptaene-2,8,14,23-tetrone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
H8T "Create component" 2018-11-26 EBI  
H8T "Initial release"  2020-07-08 RCSB 
H8T "Modify name"      2022-12-19 PDBE 
# 
