data_GRT
# 
_chem_comp.id                                    GRT 
_chem_comp.name                                  "(2~{S})-~{N}-[2-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-2-oxidanylidene-ethyl]-2-[[(2~{S})-2-azido-3-phenyl-propanoyl]amino]-4-methyl-pentanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H41 N7 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-10-05 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        599.745 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GRT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6HUC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GRT C4  C1  C 0  1 Y N N N N N 55.678 -132.927 35.137 8.391  -0.696 -1.157 C4  GRT 1  
GRT C5  C2  C 0  1 Y N N N N N 54.400 -132.509 34.768 9.594  -0.370 -1.754 C5  GRT 2  
GRT C6  C3  C 0  1 Y N N N N N 53.741 -133.105 33.692 9.650  0.654  -2.681 C6  GRT 3  
GRT C7  C4  C 0  1 N N N N N N 57.589 -134.376 34.803 5.930  -0.362 -0.845 C7  GRT 4  
GRT C8  C5  C 0  1 N N S N N N 58.641 -134.244 33.689 5.748  0.461  0.433  C8  GRT 5  
GRT C15 C6  C 0  1 N N S N N N 61.936 -133.916 35.478 1.990  0.635  1.134  C15 GRT 6  
GRT C17 C7  C 0  1 N N N N N N 63.670 -132.866 33.999 0.510  1.414  2.990  C17 GRT 7  
GRT C28 C8  C 0  1 N N N N N N 61.462 -135.204 38.997 -1.341 0.327  -0.725 C28 GRT 8  
GRT C39 C9  C 0  1 Y N N N N N 64.809 -132.556 40.832 -5.608 1.989  -1.774 C39 GRT 9  
GRT C40 C10 C 0  1 Y N N N N N 65.360 -131.430 40.246 -5.737 3.337  -1.498 C40 GRT 10 
GRT C41 C11 C 0  1 Y N N N N N 65.401 -130.225 40.929 -6.522 3.753  -0.438 C41 GRT 11 
GRT C44 C12 C 0  1 N N N N N N 65.991 -129.132 40.299 -6.664 5.223  -0.138 C44 GRT 12 
GRT N45 N1  N 0  1 N N N N N N 65.180 -127.931 40.349 -7.809 5.767  -0.880 N45 GRT 13 
GRT C42 C13 C 0  1 Y N N N N N 64.882 -130.156 42.227 -7.177 2.821  0.345  C42 GRT 14 
GRT C43 C14 C 0  1 Y N N N N N 64.316 -131.290 42.814 -7.047 1.473  0.069  C43 GRT 15 
GRT C38 C15 C 0  1 Y N N N N N 64.269 -132.517 42.135 -6.262 1.057  -0.990 C38 GRT 16 
GRT C37 C16 C 0  1 N N N N N N 63.691 -133.595 42.812 -6.126 -0.413 -1.295 C37 GRT 17 
GRT C36 C17 C 0  1 N N S N N N 63.720 -134.908 41.957 -4.932 -0.984 -0.527 C36 GRT 18 
GRT C46 C18 C 0  1 N N N N N N 63.486 -136.229 42.731 -4.868 -2.498 -0.737 C46 GRT 19 
GRT C47 C19 C 0  1 N N N N N N 61.990 -136.389 43.122 -3.752 -3.086 0.129  C47 GRT 20 
GRT S48 S1  S 0  1 N N N N N N 61.432 -138.112 43.349 -3.676 -4.882 -0.120 S48 GRT 21 
GRT O49 O1  O 0  1 N N N N N N 59.948 -138.103 43.690 -4.877 -5.459 0.373  O49 GRT 22 
GRT O50 O2  O 0  1 N N N N N N 62.140 -138.711 44.538 -3.283 -5.136 -1.462 O50 GRT 23 
GRT C51 C20 C 0  1 N N N N N N 61.688 -139.137 41.912 -2.313 -5.355 0.979  C51 GRT 24 
GRT N35 N2  N 0  1 N N N N N N 62.667 -134.795 40.954 -3.696 -0.370 -1.018 N35 GRT 25 
GRT C33 C21 C 0  1 N N N N N N 62.706 -135.428 39.790 -2.612 -0.305 -0.219 C33 GRT 26 
GRT O34 O3  O 0  1 N N N N N N 63.640 -136.120 39.381 -2.661 -0.754 0.906  O34 GRT 27 
GRT N27 N3  N 0  1 N N N N N N 61.908 -134.967 37.630 -0.319 0.275  0.324  N27 GRT 28 
GRT C25 C22 C 0  1 N N N N N N 61.396 -133.987 36.894 0.907  0.784  0.096  C25 GRT 29 
GRT O26 O4  O 0  1 N N N N N N 60.493 -133.230 37.264 1.140  1.363  -0.944 O26 GRT 30 
GRT C16 C23 C 0  1 N N N N N N 62.990 -132.817 35.373 1.804  1.694  2.221  C16 GRT 31 
GRT C19 C24 C 0  1 N N N N N N 64.500 -134.152 33.845 0.646  0.097  3.755  C19 GRT 32 
GRT C18 C25 C 0  1 N N N N N N 64.564 -131.638 33.823 0.247  2.553  3.977  C18 GRT 33 
GRT N14 N4  N 0  1 N N N N N N 60.740 -133.635 34.695 3.300  0.810  0.501  N14 GRT 34 
GRT C12 C26 C 0  1 N N N N N N 59.927 -134.639 34.360 4.383  0.192  1.013  C12 GRT 35 
GRT O13 O5  O 0  1 N N N N N N 60.139 -135.822 34.623 4.260  -0.579 1.941  O13 GRT 36 
GRT N9  N5  N 0  1 N N N N N N 58.408 -135.189 32.593 6.775  0.084  1.406  N9  GRT 37 
GRT N10 N6  N 1  1 N N N N N N 58.618 -134.721 31.349 7.859  0.290  1.188  N10 GRT 38 
GRT N11 N7  N -1 1 N N N N N N 58.834 -134.226 30.115 8.942  0.495  0.970  N11 GRT 39 
GRT C3  C27 C 0  1 Y N N N N N 56.314 -133.947 34.424 7.243  -0.002 -1.491 C3  GRT 40 
GRT C1  C28 C 0  1 Y N N N N N 54.363 -134.130 32.979 8.503  1.352  -3.011 C1  GRT 41 
GRT C2  C29 C 0  1 Y N N N N N 55.640 -134.551 33.355 7.299  1.022  -2.418 C2  GRT 42 
GRT H1  H1  H 0  1 N N N N N N 56.177 -132.462 35.975 8.347  -1.495 -0.432 H1  GRT 43 
GRT H2  H2  H 0  1 N N N N N N 53.916 -131.717 35.320 10.490 -0.914 -1.496 H2  GRT 44 
GRT H3  H3  H 0  1 N N N N N N 52.752 -132.774 33.412 10.590 0.909  -3.147 H3  GRT 45 
GRT H4  H4  H 0  1 N N N N N N 57.526 -135.434 35.098 5.925  -1.423 -0.597 H4  GRT 46 
GRT H5  H5  H 0  1 N N N N N N 57.917 -133.774 35.663 5.114  -0.147 -1.535 H5  GRT 47 
GRT H6  H6  H 0  1 N N N N N N 58.689 -133.207 33.325 5.841  1.521  0.198  H6  GRT 48 
GRT H7  H7  H 0  1 N N N N N N 62.374 -134.884 35.192 1.931  -0.358 1.579  H7  GRT 49 
GRT H8  H8  H 0  1 N N N N N N 62.893 -132.853 33.220 -0.321 1.343  2.288  H8  GRT 50 
GRT H9  H9  H 0  1 N N N N N N 60.915 -134.330 39.380 -0.989 -0.216 -1.602 H9  GRT 51 
GRT H10 H10 H 0  1 N N N N N N 60.813 -136.091 39.041 -1.533 1.366  -0.993 H10 GRT 52 
GRT H11 H11 H 0  1 N N N N N N 64.792 -133.484 40.280 -4.998 1.664  -2.604 H11 GRT 53 
GRT H12 H12 H 0  1 N N N N N N 65.762 -131.491 39.246 -5.226 4.065  -2.109 H12 GRT 54 
GRT H13 H13 H 0  1 N N N N N N 66.166 -129.390 39.244 -6.825 5.361  0.932  H13 GRT 55 
GRT H14 H14 H 0  1 N N N N N N 66.953 -128.924 40.790 -5.755 5.745  -0.438 H14 GRT 56 
GRT H15 H15 H 0  1 N N N N N N 65.657 -127.187 39.882 -7.925 6.752  -0.695 H15 GRT 57 
GRT H16 H16 H 0  1 N N N N N N 64.304 -128.101 39.897 -7.713 5.594  -1.870 H16 GRT 58 
GRT H18 H18 H 0  1 N N N N N N 64.919 -129.226 42.775 -7.790 3.147  1.172  H18 GRT 59 
GRT H19 H19 H 0  1 N N N N N N 63.906 -131.221 43.811 -7.559 0.745  0.680  H19 GRT 60 
GRT H20 H20 H 0  1 N N N N N N 62.645 -133.347 43.047 -7.035 -0.933 -0.993 H20 GRT 61 
GRT H21 H21 H 0  1 N N N N N N 64.246 -133.767 43.746 -5.968 -0.549 -2.365 H21 GRT 62 
GRT H22 H22 H 0  1 N N N N N N 64.698 -134.969 41.457 -5.047 -0.769 0.536  H22 GRT 63 
GRT H23 H23 H 0  1 N N N N N N 63.784 -137.076 42.095 -5.821 -2.945 -0.454 H23 GRT 64 
GRT H24 H24 H 0  1 N N N N N N 64.098 -136.223 43.645 -4.664 -2.711 -1.786 H24 GRT 65 
GRT H25 H25 H 0  1 N N N N N N 61.825 -135.850 44.066 -2.799 -2.639 -0.154 H25 GRT 66 
GRT H26 H26 H 0  1 N N N N N N 61.379 -135.934 42.328 -3.956 -2.874 1.178  H26 GRT 67 
GRT H27 H27 H 0  1 N N N N N N 61.330 -140.156 42.120 -2.559 -5.076 2.004  H27 GRT 68 
GRT H28 H28 H 0  1 N N N N N N 61.131 -138.720 41.060 -2.159 -6.433 0.924  H28 GRT 69 
GRT H29 H29 H 0  1 N N N N N N 62.761 -139.167 41.670 -1.402 -4.841 0.672  H29 GRT 70 
GRT H30 H30 H 0  1 N N N N N N 61.879 -134.213 41.154 -3.658 -0.010 -1.918 H30 GRT 71 
GRT H31 H31 H 0  1 N N N N N N 62.615 -135.555 37.237 -0.526 -0.127 1.183  H31 GRT 72 
GRT H32 H32 H 0  1 N N N N N N 63.746 -132.963 36.158 2.649  1.662  2.909  H32 GRT 73 
GRT H33 H33 H 0  1 N N N N N N 62.508 -131.837 35.505 1.747  2.681  1.762  H33 GRT 74 
GRT H34 H34 H 0  1 N N N N N N 63.847 -135.028 33.973 1.435  0.190  4.502  H34 GRT 75 
GRT H35 H35 H 0  1 N N N N N N 64.954 -134.177 32.844 -0.297 -0.136 4.249  H35 GRT 76 
GRT H36 H36 H 0  1 N N N N N N 65.292 -134.170 34.608 0.899  -0.703 3.059  H36 GRT 77 
GRT H37 H37 H 0  1 N N N N N N 63.960 -130.725 33.935 0.150  3.492  3.432  H37 GRT 78 
GRT H38 H38 H 0  1 N N N N N N 65.357 -131.649 34.586 -0.674 2.353  4.525  H38 GRT 79 
GRT H39 H39 H 0  1 N N N N N N 65.019 -131.656 32.822 1.078  2.625  4.679  H39 GRT 80 
GRT H40 H40 H 0  1 N N N N N N 60.530 -132.699 34.411 3.387  1.370  -0.286 H40 GRT 81 
GRT H42 H42 H 0  1 N N N N N N 53.861 -134.594 32.143 8.547  2.152  -3.735 H42 GRT 82 
GRT H43 H43 H 0  1 N N N N N N 56.116 -135.355 32.813 6.403  1.567  -2.676 H43 GRT 83 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GRT N11 N10 DOUB N N 1  
GRT N10 N9  DOUB N N 2  
GRT N9  C8  SING N N 3  
GRT C1  C2  DOUB Y N 4  
GRT C1  C6  SING Y N 5  
GRT C2  C3  SING Y N 6  
GRT C8  C12 SING N N 7  
GRT C8  C7  SING N N 8  
GRT C6  C5  DOUB Y N 9  
GRT C18 C17 SING N N 10 
GRT C19 C17 SING N N 11 
GRT C17 C16 SING N N 12 
GRT C12 O13 DOUB N N 13 
GRT C12 N14 SING N N 14 
GRT C3  C7  SING N N 15 
GRT C3  C4  DOUB Y N 16 
GRT N14 C15 SING N N 17 
GRT C5  C4  SING Y N 18 
GRT C16 C15 SING N N 19 
GRT C15 C25 SING N N 20 
GRT C25 O26 DOUB N N 21 
GRT C25 N27 SING N N 22 
GRT N27 C28 SING N N 23 
GRT C28 C33 SING N N 24 
GRT O34 C33 DOUB N N 25 
GRT C33 N35 SING N N 26 
GRT C40 C39 DOUB Y N 27 
GRT C40 C41 SING Y N 28 
GRT C44 N45 SING N N 29 
GRT C44 C41 SING N N 30 
GRT C39 C38 SING Y N 31 
GRT C41 C42 DOUB Y N 32 
GRT N35 C36 SING N N 33 
GRT C51 S48 SING N N 34 
GRT C36 C46 SING N N 35 
GRT C36 C37 SING N N 36 
GRT C38 C37 SING N N 37 
GRT C38 C43 DOUB Y N 38 
GRT C42 C43 SING Y N 39 
GRT C46 C47 SING N N 40 
GRT C47 S48 SING N N 41 
GRT S48 O49 DOUB N N 42 
GRT S48 O50 DOUB N N 43 
GRT C4  H1  SING N N 44 
GRT C5  H2  SING N N 45 
GRT C6  H3  SING N N 46 
GRT C7  H4  SING N N 47 
GRT C7  H5  SING N N 48 
GRT C8  H6  SING N N 49 
GRT C15 H7  SING N N 50 
GRT C17 H8  SING N N 51 
GRT C28 H9  SING N N 52 
GRT C28 H10 SING N N 53 
GRT C39 H11 SING N N 54 
GRT C40 H12 SING N N 55 
GRT C44 H13 SING N N 56 
GRT C44 H14 SING N N 57 
GRT N45 H15 SING N N 58 
GRT N45 H16 SING N N 59 
GRT C42 H18 SING N N 60 
GRT C43 H19 SING N N 61 
GRT C37 H20 SING N N 62 
GRT C37 H21 SING N N 63 
GRT C36 H22 SING N N 64 
GRT C46 H23 SING N N 65 
GRT C46 H24 SING N N 66 
GRT C47 H25 SING N N 67 
GRT C47 H26 SING N N 68 
GRT C51 H27 SING N N 69 
GRT C51 H28 SING N N 70 
GRT C51 H29 SING N N 71 
GRT N35 H30 SING N N 72 
GRT N27 H31 SING N N 73 
GRT C16 H32 SING N N 74 
GRT C16 H33 SING N N 75 
GRT C19 H34 SING N N 76 
GRT C19 H35 SING N N 77 
GRT C19 H36 SING N N 78 
GRT C18 H37 SING N N 79 
GRT C18 H38 SING N N 80 
GRT C18 H39 SING N N 81 
GRT N14 H40 SING N N 82 
GRT C1  H42 SING N N 83 
GRT C2  H43 SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GRT InChI            InChI                1.03  "InChI=1S/C29H41N7O5S/c1-20(2)15-25(34-29(39)26(35-36-31)17-21-7-5-4-6-8-21)28(38)32-19-27(37)33-24(13-14-42(3,40)41)16-22-9-11-23(18-30)12-10-22/h4-12,20,24-26H,13-19,30H2,1-3H3,(H,32,38)(H,33,37)(H,34,39)/t24-,25+,26+/m1/s1" 
GRT InChIKey         InChI                1.03  POJZTOVJTGGZDY-ZNZIZOMTSA-N                                                                                                                                                                                                        
GRT SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)[C@H](Cc1ccccc1)N=[N+]=[N-])C(=O)NCC(=O)N[C@H](CC[S](C)(=O)=O)Cc2ccc(CN)cc2"                                                                                                                                    
GRT SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)[CH](Cc1ccccc1)N=[N+]=[N-])C(=O)NCC(=O)N[CH](CC[S](C)(=O)=O)Cc2ccc(CN)cc2"                                                                                                                                       
GRT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)C[C@@H](C(=O)NCC(=O)N[C@H](CCS(=O)(=O)C)Cc1ccc(cc1)CN)NC(=O)[C@H](Cc2ccccc2)N=[N+]=[N-]"                                                                                                                                     
GRT SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C)CC(C(=O)NCC(=O)NC(CCS(=O)(=O)C)Cc1ccc(cc1)CN)NC(=O)C(Cc2ccccc2)N=[N+]=[N-]"                                                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           GRT 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-~{N}-[2-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-2-oxidanylidene-ethyl]-2-[[(2~{S})-2-azido-3-phenyl-propanoyl]amino]-4-methyl-pentanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GRT "Create component" 2018-10-05 EBI  
GRT "Initial release"  2019-01-30 RCSB 
GRT "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            GRT 
_pdbx_chem_comp_pcm.modified_residue_id                THR 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C46 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG1 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
