data_GKT
# 
_chem_comp.id                                    GKT 
_chem_comp.name                                  "3-iodanyl-4-methyl-~{N}-[2-(piperidin-1-ylmethyl)-3~{H}-benzimidazol-5-yl]benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H23 I N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-09-24 
_chem_comp.pdbx_modified_date                    2018-11-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        474.338 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GKT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6HPW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GKT C1  C1  C 0 1 Y N N 3.914  14.926 12.282 -5.195 -1.693 -0.412 C1  GKT 1  
GKT C2  C2  C 0 1 Y N N 2.904  14.008 11.987 -4.374 -2.806 -0.399 C2  GKT 2  
GKT C3  C3  C 0 1 Y N N 1.692  14.010 12.655 -3.018 -2.664 -0.188 C3  GKT 3  
GKT C4  C4  C 0 1 Y N N 1.444  14.932 13.660 -2.474 -1.395 0.012  C4  GKT 4  
GKT C5  C5  C 0 1 Y N N 2.441  15.853 13.984 -3.308 -0.275 -0.003 C5  GKT 5  
GKT C6  C6  C 0 1 Y N N 3.643  15.868 13.280 -4.663 -0.431 -0.215 C6  GKT 6  
GKT C7  C7  C 0 1 N N N 0.087  14.976 14.283 -1.023 -1.236 0.239  C7  GKT 7  
GKT O   O1  O 0 1 N N N -0.922 14.786 13.614 -0.299 -2.212 0.252  O   GKT 8  
GKT I   I1  I 0 1 N N N 4.957  17.529 13.566 -5.917 1.248  -0.237 I   GKT 9  
GKT C   C8  C 0 1 N N N 5.231  14.842 11.559 -6.674 -1.855 -0.650 C   GKT 10 
GKT N   N1  N 0 1 N N N 0.057  15.235 15.602 -0.501 -0.008 0.432  N   GKT 11 
GKT C8  C9  C 0 1 Y N N -1.066 15.274 16.438 0.856  0.135  0.743  C8  GKT 12 
GKT C20 C10 C 0 1 Y N N -2.297 14.754 16.029 1.786  -0.725 0.183  C20 GKT 13 
GKT C19 C11 C 0 1 Y N N -3.335 14.694 16.949 3.130  -0.579 0.495  C19 GKT 14 
GKT C11 C12 C 0 1 Y N N -3.144 15.172 18.240 3.539  0.437  1.375  C11 GKT 15 
GKT C10 C13 C 0 1 Y N N -1.935 15.707 18.652 2.585  1.295  1.930  C10 GKT 16 
GKT C9  C14 C 0 1 Y N N -0.896 15.758 17.737 1.266  1.145  1.612  C9  GKT 17 
GKT N3  N2  N 0 1 Y N N -4.627 14.206 16.822 4.280  -1.246 0.122  N3  GKT 18 
GKT C12 C15 C 0 1 Y N N -5.187 14.407 18.001 5.322  -0.644 0.758  C12 GKT 19 
GKT N1  N3  N 0 1 Y N N -4.344 14.974 18.890 4.889  0.340  1.491  N1  GKT 20 
GKT C13 C16 C 0 1 N N N -6.626 14.152 18.317 6.766  -1.056 0.632  C13 GKT 21 
GKT N2  N4  N 0 1 N N N -6.829 12.910 19.074 7.420  -0.240 -0.399 N2  GKT 22 
GKT C18 C17 C 0 1 N N N -8.276 12.620 19.205 8.754  -0.766 -0.718 C18 GKT 23 
GKT C17 C18 C 0 1 N N N -8.540 11.266 19.833 9.344  0.018  -1.893 C17 GKT 24 
GKT C16 C19 C 0 1 N N N -7.661 11.046 21.050 9.435  1.499  -1.518 C16 GKT 25 
GKT C15 C20 C 0 1 N N N -7.057 12.355 21.513 8.041  2.010  -1.143 C15 GKT 26 
GKT C14 C21 C 0 1 N N N -6.223 13.003 20.413 7.488  1.169  0.010  C14 GKT 27 
GKT H1  H1  H 0 1 N N N 3.074  13.274 11.214 -4.795 -3.789 -0.554 H1  GKT 28 
GKT H2  H2  H 0 1 N N N 0.934  13.288 12.391 -2.378 -3.534 -0.177 H2  GKT 29 
GKT H3  H3  H 0 1 N N N 2.280  16.559 14.786 -2.894 0.710  0.152  H3  GKT 30 
GKT H4  H4  H 0 1 N N N 5.194  15.468 10.655 -6.879 -1.800 -1.719 H4  GKT 31 
GKT H5  H5  H 0 1 N N N 6.035  15.198 12.220 -7.000 -2.823 -0.267 H5  GKT 32 
GKT H6  H6  H 0 1 N N N 5.427  13.798 11.274 -7.214 -1.061 -0.134 H6  GKT 33 
GKT H7  H7  H 0 1 N N N 0.938  15.421 16.036 -1.066 0.777  0.356  H7  GKT 34 
GKT H8  H8  H 0 1 N N N -2.438 14.405 15.017 1.467  -1.504 -0.493 H8  GKT 35 
GKT H9  H9  H 0 1 N N N -1.806 16.075 19.659 2.892  2.078  2.607  H9  GKT 36 
GKT H10 H10 H 0 1 N N N 0.055  16.176 18.031 0.533  1.813  2.040  H10 GKT 37 
GKT H11 H11 H 0 1 N N N -5.044 13.792 16.013 4.335  -2.003 -0.482 H11 GKT 38 
GKT H13 H13 H 0 1 N N N -7.010 14.994 18.912 7.270  -0.909 1.587  H13 GKT 39 
GKT H14 H14 H 0 1 N N N -7.187 14.084 17.373 6.820  -2.108 0.352  H14 GKT 40 
GKT H16 H16 H 0 1 N N N -8.736 13.397 19.834 9.403  -0.661 0.151  H16 GKT 41 
GKT H17 H17 H 0 1 N N N -8.732 12.640 18.204 8.674  -1.819 -0.987 H17 GKT 42 
GKT H18 H18 H 0 1 N N N -9.595 11.211 20.138 10.340 -0.362 -2.119 H18 GKT 43 
GKT H19 H19 H 0 1 N N N -8.331 10.480 19.092 8.703  -0.098 -2.766 H19 GKT 44 
GKT H20 H20 H 0 1 N N N -8.268 10.620 21.863 10.108 1.619  -0.668 H20 GKT 45 
GKT H21 H21 H 0 1 N N N -6.853 10.346 20.791 9.815  2.067  -2.367 H21 GKT 46 
GKT H22 H22 H 0 1 N N N -6.413 12.164 22.384 8.106  3.053  -0.834 H22 GKT 47 
GKT H23 H23 H 0 1 N N N -7.867 13.042 21.799 7.379  1.926  -2.005 H23 GKT 48 
GKT H24 H24 H 0 1 N N N -5.241 12.507 20.385 6.490  1.520  0.270  H24 GKT 49 
GKT H25 H25 H 0 1 N N N -6.090 14.067 20.660 8.144  1.264  0.876  H25 GKT 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GKT C   C1  SING N N 1  
GKT C2  C1  DOUB Y N 2  
GKT C2  C3  SING Y N 3  
GKT C1  C6  SING Y N 4  
GKT C3  C4  DOUB Y N 5  
GKT C6  I   SING N N 6  
GKT C6  C5  DOUB Y N 7  
GKT O   C7  DOUB N N 8  
GKT C4  C5  SING Y N 9  
GKT C4  C7  SING N N 10 
GKT C7  N   SING N N 11 
GKT N   C8  SING N N 12 
GKT C20 C8  DOUB Y N 13 
GKT C20 C19 SING Y N 14 
GKT C8  C9  SING Y N 15 
GKT N3  C19 SING Y N 16 
GKT N3  C12 SING Y N 17 
GKT C19 C11 DOUB Y N 18 
GKT C9  C10 DOUB Y N 19 
GKT C12 C13 SING N N 20 
GKT C12 N1  DOUB Y N 21 
GKT C11 C10 SING Y N 22 
GKT C11 N1  SING Y N 23 
GKT C13 N2  SING N N 24 
GKT N2  C18 SING N N 25 
GKT N2  C14 SING N N 26 
GKT C18 C17 SING N N 27 
GKT C17 C16 SING N N 28 
GKT C14 C15 SING N N 29 
GKT C16 C15 SING N N 30 
GKT C2  H1  SING N N 31 
GKT C3  H2  SING N N 32 
GKT C5  H3  SING N N 33 
GKT C   H4  SING N N 34 
GKT C   H5  SING N N 35 
GKT C   H6  SING N N 36 
GKT N   H7  SING N N 37 
GKT C20 H8  SING N N 38 
GKT C10 H9  SING N N 39 
GKT C9  H10 SING N N 40 
GKT N3  H11 SING N N 41 
GKT C13 H13 SING N N 42 
GKT C13 H14 SING N N 43 
GKT C18 H16 SING N N 44 
GKT C18 H17 SING N N 45 
GKT C17 H18 SING N N 46 
GKT C17 H19 SING N N 47 
GKT C16 H20 SING N N 48 
GKT C16 H21 SING N N 49 
GKT C15 H22 SING N N 50 
GKT C15 H23 SING N N 51 
GKT C14 H24 SING N N 52 
GKT C14 H25 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GKT InChI            InChI                1.03  "InChI=1S/C21H23IN4O/c1-14-5-6-15(11-17(14)22)21(27)23-16-7-8-18-19(12-16)25-20(24-18)13-26-9-3-2-4-10-26/h5-8,11-12H,2-4,9-10,13H2,1H3,(H,23,27)(H,24,25)" 
GKT InChIKey         InChI                1.03  VMKBJIIRNPWSSI-UHFFFAOYSA-N                                                                                                                                 
GKT SMILES_CANONICAL CACTVS               3.385 "Cc1ccc(cc1I)C(=O)Nc2ccc3nc(CN4CCCCC4)[nH]c3c2"                                                                                                             
GKT SMILES           CACTVS               3.385 "Cc1ccc(cc1I)C(=O)Nc2ccc3nc(CN4CCCCC4)[nH]c3c2"                                                                                                             
GKT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ccc(cc1I)C(=O)Nc2ccc3c(c2)[nH]c(n3)CN4CCCCC4"                                                                                                           
GKT SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1ccc(cc1I)C(=O)Nc2ccc3c(c2)[nH]c(n3)CN4CCCCC4"                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GKT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "3-iodanyl-4-methyl-~{N}-[2-(piperidin-1-ylmethyl)-3~{H}-benzimidazol-5-yl]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GKT "Create component" 2018-09-24 EBI  
GKT "Initial release"  2018-11-28 RCSB 
# 
