data_GFT
# 
_chem_comp.id                                    GFT 
_chem_comp.name                                  "(2S)-2-azanyl-3-[cyclohexyloxy(methyl)phosphoryl]oxy-propanoic acid" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C10 H20 N O5 P" 
_chem_comp.mon_nstd_parent_comp_id               SER 
_chem_comp.pdbx_synonyms                         "Cyclosarin bound Serine" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-02-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        265.243 
_chem_comp.one_letter_code                       S 
_chem_comp.three_letter_code                     GFT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3ZLU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GFT N    N    N 0 1 N N N N N N 7.503  4.898  -37.817 2.770  -0.084 -1.740 N    GFT 1  
GFT CA   CA   C 0 1 N N S N N N 8.692  4.277  -37.204 2.824  0.123  -0.287 CA   GFT 2  
GFT C    C    C 0 1 N N N N N N 9.893  4.230  -38.253 3.440  -1.084 0.370  C    GFT 3  
GFT O    O    O 0 1 N N N N N N 10.337 5.560  -38.440 3.466  -2.142 -0.213 O    GFT 4  
GFT CB   CB   C 0 1 N N N N N N 8.271  2.837  -36.656 1.407  0.330  0.252  CB   GFT 5  
GFT OG   OG   O 0 1 N N N N N N 9.290  1.880  -36.537 0.866  1.540  -0.283 OG   GFT 6  
GFT CAA  CAA  C 0 1 N N N N N N 10.567 -0.545 -36.292 -0.867 3.709  -0.686 CAA  GFT 7  
GFT OAC  OAC  O 0 1 N N N N N N 9.773  0.562  -38.639 -0.757 2.180  1.541  OAC  GFT 8  
GFT CAD  CAD  C 0 1 N N N N N N 5.073  -3.067 -37.403 -3.151 -2.919 -0.095 CAD  GFT 9  
GFT CAE  CAE  C 0 1 N N N N N N 6.534  -3.379 -37.785 -1.746 -2.715 -0.666 CAE  GFT 10 
GFT CAF  CAF  C 0 1 N N N N N N 4.801  -1.564 -37.434 -3.379 -1.942 1.060  CAF  GFT 11 
GFT CAG  CAG  C 0 1 N N N N N N 7.501  -2.766 -36.773 -1.607 -1.280 -1.177 CAG  GFT 12 
GFT CAH  CAH  C 0 1 N N N N N N 5.707  -0.848 -36.438 -3.241 -0.506 0.548  CAH  GFT 13 
GFT OAI  OAI  O 0 1 N N N N N N 7.960  -0.413 -37.293 -1.706 1.038  -0.501 OAI  GFT 14 
GFT CAJ  CAJ  C 0 1 N N N N N N 7.221  -1.256 -36.447 -1.836 -0.302 -0.023 CAJ  GFT 15 
GFT PAK  PAK  P 0 1 N N S N N N 9.364  0.352  -37.132 -0.612 2.071  0.072  PAK  GFT 16 
GFT OXT  OXT  O 0 1 N Y N N N N 10.220 3.385  -39.227 3.960  -0.985 1.604  OXT  GFT 17 
GFT HN1  HN1  H 0 1 N N N N N N 7.743  5.803  -38.168 3.697  -0.159 -2.130 HN1  GFT 18 
GFT HN2  HN2  H 0 1 N N N N N N 7.178  4.324  -38.569 2.215  -0.895 -1.969 HN2  GFT 19 
GFT HA   HA   H 0 1 N N N N N N 9.018  4.882  -36.345 3.428  1.004  -0.068 HA   GFT 20 
GFT HB1C HB1C H 0 0 N N N N N N 7.511  2.430  -37.340 0.780  -0.511 -0.044 HB1C GFT 21 
GFT HB2C HB2C H 0 0 N N N N N N 7.829  2.977  -35.659 1.438  0.396  1.339  HB2C GFT 22 
GFT HAA1 HAA1 H 0 0 N N N N N N 10.611 -1.567 -36.695 -0.760 3.629  -1.768 HAA1 GFT 23 
GFT HAA2 HAA2 H 0 0 N N N N N N 11.545 -0.057 -36.421 -1.867 4.069  -0.446 HAA2 GFT 24 
GFT HAA3 HAA3 H 0 0 N N N N N N 10.315 -0.584 -35.222 -0.126 4.409  -0.299 HAA3 GFT 25 
GFT HAD1 HAD1 H 0 0 N N N N N N 4.401  -3.568 -38.116 -3.890 -2.738 -0.876 HAD1 GFT 26 
GFT HAD2 HAD2 H 0 0 N N N N N N 4.879  -3.446 -36.389 -3.250 -3.941 0.269  HAD2 GFT 27 
GFT HAE1 HAE1 H 0 0 N N N N N N 6.677  -4.470 -37.806 -1.007 -2.895 0.115  HAE1 GFT 28 
GFT HAE2 HAE2 H 0 0 N N N N N N 6.743  -2.963 -38.782 -1.583 -3.411 -1.488 HAE2 GFT 29 
GFT HAF1 HAF1 H 0 0 N N N N N N 4.997  -1.179 -38.446 -4.380 -2.087 1.466  HAF1 GFT 30 
GFT HAF2 HAF2 H 0 0 N N N N N N 3.750  -1.379 -37.168 -2.640 -2.122 1.840  HAF2 GFT 31 
GFT HAG1 HAG1 H 0 0 N N N N N N 7.430  -3.340 -35.837 -0.606 -1.134 -1.584 HAG1 GFT 32 
GFT HAG2 HAG2 H 0 0 N N N N N N 8.521  -2.848 -37.177 -2.346 -1.099 -1.958 HAG2 GFT 33 
GFT HAH1 HAH1 H 0 0 N N N N N N 5.651  0.230  -36.650 -3.980 -0.326 -0.233 HAH1 GFT 34 
GFT HAH2 HAH2 H 0 0 N N N N N N 5.315  -1.044 -35.429 -3.403 0.190  1.371  HAH2 GFT 35 
GFT HAJ  HAJ  H 0 1 N N N N N N 7.581  -1.099 -35.419 -1.097 -0.483 0.758  HAJ  GFT 36 
GFT HXT  HXT  H 0 1 N Y N N N N 10.711 3.847  -39.896 4.344  -1.787 1.984  HXT  GFT 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GFT N   CA   SING N N 1  
GFT C   O    DOUB N N 2  
GFT C   OXT  SING N N 3  
GFT CB  OG   SING N N 4  
GFT CB  CA   SING N N 5  
GFT OG  PAK  SING N N 6  
GFT CAA PAK  SING N N 7  
GFT OAC PAK  DOUB N N 8  
GFT CAD CAE  SING N N 9  
GFT CAD CAF  SING N N 10 
GFT CAE CAG  SING N N 11 
GFT CAF CAH  SING N N 12 
GFT CAG CAJ  SING N N 13 
GFT CAH CAJ  SING N N 14 
GFT OAI CAJ  SING N N 15 
GFT OAI PAK  SING N N 16 
GFT N   HN1  SING N N 17 
GFT N   HN2  SING N N 18 
GFT CA  HA   SING N N 19 
GFT C   CA   SING N N 20 
GFT CB  HB1C SING N N 21 
GFT CB  HB2C SING N N 22 
GFT CAA HAA1 SING N N 23 
GFT CAA HAA2 SING N N 24 
GFT CAA HAA3 SING N N 25 
GFT CAD HAD1 SING N N 26 
GFT CAD HAD2 SING N N 27 
GFT CAE HAE1 SING N N 28 
GFT CAE HAE2 SING N N 29 
GFT CAF HAF1 SING N N 30 
GFT CAF HAF2 SING N N 31 
GFT CAG HAG1 SING N N 32 
GFT CAG HAG2 SING N N 33 
GFT CAH HAH1 SING N N 34 
GFT CAH HAH2 SING N N 35 
GFT CAJ HAJ  SING N N 36 
GFT OXT HXT  SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GFT SMILES           ACDLabs              12.01 "O=C(O)C(N)COP(=O)(OC1CCCCC1)C"                                                                               
GFT InChI            InChI                1.03  "InChI=1S/C10H20NO5P/c1-17(14,15-7-9(11)10(12)13)16-8-5-3-2-4-6-8/h8-9H,2-7,11H2,1H3,(H,12,13)/t9-,17-/m0/s1" 
GFT InChIKey         InChI                1.03  MMIZIQBFTWGSRL-XYZCENFISA-N                                                                                   
GFT SMILES_CANONICAL CACTVS               3.385 "C[P@](=O)(OC[C@H](N)C(O)=O)OC1CCCCC1"                                                                        
GFT SMILES           CACTVS               3.385 "C[P](=O)(OC[CH](N)C(O)=O)OC1CCCCC1"                                                                          
GFT SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[P@](=O)(OC[C@@H](C(=O)O)N)OC1CCCCC1"                                                                       
GFT SMILES           "OpenEye OEToolkits" 1.9.2 "CP(=O)(OCC(C(=O)O)N)OC1CCCCC1"                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GFT "SYSTEMATIC NAME" ACDLabs              12.01 "O-[(S)-(cyclohexyloxy)(methyl)phosphoryl]-L-serine"                  
GFT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-azanyl-3-[cyclohexyloxy(methyl)phosphoryl]oxy-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GFT "Create component"  2013-02-04 EBI  
GFT "Initial release"   2013-03-27 RCSB 
GFT "Modify descriptor" 2014-09-05 RCSB 
GFT "Modify synonyms"   2021-03-01 PDBE 
GFT "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      GFT 
_pdbx_chem_comp_synonyms.name         "Cyclosarin bound Serine" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
