data_D0T
# 
_chem_comp.id                                    D0T 
_chem_comp.name                                  "(2S)-2-(3-hydroxy-3-oxopropyl)-6-[[methyl-[[2-[(phenylmethyl)carbamoyl]phenyl]methyl]amino]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H30 N2 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-11-13 
_chem_comp.pdbx_modified_date                    2014-04-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        518.558 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D0T 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4CEF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D0T C1  C1  C 0 1 Y N N -10.277 47.669 5.215  -5.065 2.649  -2.556 C1  D0T 1  
D0T C2  C2  C 0 1 Y N N -11.145 48.466 4.495  -4.546 3.897  -2.259 C2  D0T 2  
D0T C3  C3  C 0 1 Y N N -9.271  46.971 4.575  -4.750 1.562  -1.766 C3  D0T 3  
D0T C4  C4  C 0 1 Y N N -11.008 48.552 3.123  -3.705 4.062  -1.173 C4  D0T 4  
D0T C5  C5  C 0 1 Y N N -11.508 44.790 -1.982 2.185  2.864  1.058  C5  D0T 5  
D0T C6  C6  C 0 1 Y N N -12.397 44.356 -2.951 3.408  2.308  0.719  C6  D0T 6  
D0T C7  C7  C 0 1 Y N N -9.139  47.064 3.201  -3.902 1.722  -0.669 C7  D0T 7  
D0T C8  C8  C 0 1 Y N N -13.340 45.293 -0.526 1.198  0.673  1.100  C8  D0T 8  
D0T C9  C9  C 0 1 Y N N -10.009 47.852 2.473  -3.378 2.983  -0.378 C9  D0T 9  
D0T C10 C10 C 0 1 Y N N -11.970 45.259 -0.766 1.085  2.058  1.252  C10 D0T 10 
D0T C11 C11 C 0 1 Y N N -13.750 44.407 -2.724 3.538  0.936  0.571  C11 D0T 11 
D0T C12 C12 C 0 1 Y N N -14.226 44.857 -1.508 2.437  0.111  0.762  C12 D0T 12 
D0T C13 C15 C 0 1 N N N -8.063  46.308 2.520  -3.561 0.562  0.181  C15 D0T 13 
D0T C14 C16 C 0 1 N N N -13.871 45.767 0.788  0.024  -0.193 1.307  C16 D0T 14 
D0T C15 C17 C 0 1 N N N -16.729 45.386 -6.339 8.452  -1.242 -1.221 C17 D0T 15 
D0T C16 C18 C 0 1 Y N N -8.533  41.873 -1.022 -5.685 -5.297 -0.748 C18 D0T 16 
D0T C17 C19 C 0 1 Y N N -8.437  41.294 0.225  -6.309 -4.507 0.199  C19 D0T 17 
D0T C18 C20 C 0 1 Y N N -8.130  43.177 -1.220 -4.427 -4.959 -1.210 C20 D0T 18 
D0T C19 C21 C 0 1 Y N N -7.932  42.036 1.267  -5.677 -3.375 0.679  C21 D0T 19 
D0T C20 C22 C 0 1 Y N N -7.633  43.916 -0.168 -3.793 -3.831 -0.726 C22 D0T 20 
D0T C21 C23 C 0 1 N N N -16.376 44.162 -2.177 3.863  -1.786 0.646  C23 D0T 21 
D0T C22 C24 C 0 1 Y N N -7.533  43.340 1.083  -4.422 -3.034 0.213  C24 D0T 22 
D0T C23 C25 C 0 1 N N S -15.913 44.463 -3.569 4.759  -0.928 -0.258 C25 D0T 23 
D0T C24 C26 C 0 1 N N N -9.889  47.966 0.993  -2.462 3.166  0.804  C26 D0T 24 
D0T C25 C27 C 0 1 N N N -10.940 45.735 0.226  -0.240 2.670  1.629  C27 D0T 25 
D0T C26 C28 C 0 1 N N N -11.003 47.931 -1.125 -0.528 3.608  -0.585 C28 D0T 26 
D0T C27 C29 C 0 1 N N N -16.416 43.940 -5.988 7.046  -0.699 -1.238 C29 D0T 27 
D0T C28 C30 C 0 1 N N N -6.999  44.117 2.241  -3.730 -1.803 0.741  C30 D0T 28 
D0T C29 C31 C 0 1 N N N -16.859 43.776 -4.543 6.186  -1.479 -0.241 C31 D0T 29 
D0T N1  N32 N 0 1 N N N -8.024  44.966 2.801  -4.069 -0.654 -0.102 N32 D0T 30 
D0T N2  N33 N 0 1 N N N -10.939 47.255 0.212  -1.105 2.731  0.444  N33 D0T 31 
D0T O1  O34 O 0 1 N N N -14.784 45.044 1.288  -0.644 -0.549 0.357  O34 D0T 32 
D0T O2  O35 O 0 1 N N N -17.831 45.856 -5.938 9.387  -0.707 -2.021 O35 D0T 33 
D0T O3  O36 O 0 1 N N N -7.290  46.872 1.756  -2.823 0.705  1.136  O36 D0T 34 
D0T O4  O37 O 0 1 N N N -13.355 46.760 1.360  -0.310 -0.590 2.551  O37 D0T 35 
D0T O5  O38 O 0 1 N N N -15.839 45.961 -7.026 8.737  -2.158 -0.487 O38 D0T 36 
D0T O6  O39 O 0 1 N N N -15.594 44.921 -1.256 2.541  -1.236 0.617  O39 D0T 37 
D0T O7  O40 O 0 1 N N N -14.580 43.971 -3.743 4.752  0.412  0.244  O40 D0T 38 
D0T H1  H1  H 0 1 N N N -10.385 47.591 6.287  -5.720 2.526  -3.405 H1  D0T 39 
D0T H2  H2  H 0 1 N N N -11.924 49.017 5.000  -4.799 4.745  -2.877 H2  D0T 40 
D0T H3  H3  H 0 1 N N N -8.591  46.355 5.145  -5.158 0.589  -1.997 H3  D0T 41 
D0T H4  H4  H 0 1 N N N -11.686 49.171 2.554  -3.303 5.039  -0.946 H4  D0T 42 
D0T H5  H5  H 0 1 N N N -10.446 44.762 -2.177 2.095  3.934  1.175  H5  D0T 43 
D0T H6  H6  H 0 1 N N N -12.024 43.975 -3.890 4.265  2.948  0.568  H6  D0T 44 
D0T H7  H7  H 0 1 N N N -8.926  41.302 -1.850 -6.179 -6.181 -1.124 H7  D0T 45 
D0T H8  H8  H 0 1 N N N -8.753  40.273 0.381  -7.290 -4.773 0.563  H8  D0T 46 
D0T H9  H9  H 0 1 N N N -8.204  43.620 -2.202 -3.940 -5.577 -1.950 H9  D0T 47 
D0T H10 H10 H 0 1 N N N -7.847  41.588 2.246  -6.164 -2.758 1.419  H10 D0T 48 
D0T H11 H11 H 0 1 N N N -7.324  44.939 -0.321 -2.810 -3.566 -1.088 H11 D0T 49 
D0T H12 H12 H 0 1 N N N -17.437 44.435 -2.073 3.842  -2.811 0.277  H12 D0T 50 
D0T H13 H13 H 0 1 N N N -16.252 43.089 -1.970 4.246  -1.769 1.666  H13 D0T 51 
D0T H14 H14 H 0 1 N N N -15.946 45.549 -3.739 4.373  -0.941 -1.278 H14 D0T 52 
D0T H15 H15 H 0 1 N N N -8.911  47.557 0.699  -2.443 4.217  1.090  H15 D0T 53 
D0T H16 H16 H 0 1 N N N -9.934  49.033 0.730  -2.824 2.568  1.640  H16 D0T 54 
D0T H17 H17 H 0 1 N N N -11.195 45.371 1.232  -0.717 2.059  2.396  H17 D0T 55 
D0T H18 H18 H 0 1 N N N -9.946  45.359 -0.059 -0.079 3.677  2.014  H18 D0T 56 
D0T H19 H19 H 0 1 N N N -10.995 49.022 -0.986 0.448  3.224  -0.883 H19 D0T 57 
D0T H20 H20 H 0 1 N N N -10.133 47.632 -1.729 -1.188 3.634  -1.452 H20 D0T 58 
D0T H21 H21 H 0 1 N N N -11.928 47.634 -1.642 -0.415 4.614  -0.183 H21 D0T 59 
D0T H22 H22 H 0 1 N N N -16.974 43.255 -6.643 7.060  0.354  -0.959 H22 D0T 60 
D0T H23 H23 H 0 1 N N N -15.338 43.744 -6.086 6.628  -0.805 -2.239 H23 D0T 61 
D0T H24 H24 H 0 1 N N N -6.647  43.418 3.014  -4.057 -1.613 1.763  H24 D0T 62 
D0T H25 H25 H 0 1 N N N -6.159  44.741 1.901  -2.651 -1.959 0.727  H25 D0T 63 
D0T H26 H26 H 0 1 N N N -17.863 44.212 -4.429 6.605  -1.373 0.760  H26 D0T 64 
D0T H27 H27 H 0 1 N N N -16.896 42.703 -4.304 6.173  -2.533 -0.520 H27 D0T 65 
D0T H28 H28 H 0 1 N N N -8.717  44.569 3.403  -4.658 -0.768 -0.864 H28 D0T 66 
D0T H30 H30 H 0 1 N N N -17.919 46.755 -6.234 10.275 -1.088 -1.975 H30 D0T 67 
D0T H31 H31 H 0 1 N N N -13.755 46.877 2.214  -1.088 -1.158 2.637  H31 D0T 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D0T O5  C15 DOUB N N 1  
D0T C15 C27 SING N N 2  
D0T C15 O2  SING N N 3  
D0T C27 C29 SING N N 4  
D0T C29 C23 SING N N 5  
D0T O7  C23 SING N N 6  
D0T O7  C11 SING N N 7  
D0T C23 C21 SING N N 8  
D0T C6  C11 DOUB Y N 9  
D0T C6  C5  SING Y N 10 
D0T C11 C12 SING Y N 11 
D0T C21 O6  SING N N 12 
D0T C5  C10 DOUB Y N 13 
D0T C12 O6  SING N N 14 
D0T C12 C8  DOUB Y N 15 
D0T C18 C16 DOUB Y N 16 
D0T C18 C20 SING Y N 17 
D0T C26 N2  SING N N 18 
D0T C16 C17 SING Y N 19 
D0T C10 C8  SING Y N 20 
D0T C10 C25 SING N N 21 
D0T C8  C14 SING N N 22 
D0T C20 C22 DOUB Y N 23 
D0T N2  C25 SING N N 24 
D0T N2  C24 SING N N 25 
D0T C17 C19 DOUB Y N 26 
D0T C14 O1  DOUB N N 27 
D0T C14 O4  SING N N 28 
D0T C24 C9  SING N N 29 
D0T C22 C19 SING Y N 30 
D0T C22 C28 SING N N 31 
D0T O3  C13 DOUB N N 32 
D0T C28 N1  SING N N 33 
D0T C9  C4  DOUB Y N 34 
D0T C9  C7  SING Y N 35 
D0T C13 N1  SING N N 36 
D0T C13 C7  SING N N 37 
D0T C4  C2  SING Y N 38 
D0T C7  C3  DOUB Y N 39 
D0T C2  C1  DOUB Y N 40 
D0T C3  C1  SING Y N 41 
D0T C1  H1  SING N N 42 
D0T C2  H2  SING N N 43 
D0T C3  H3  SING N N 44 
D0T C4  H4  SING N N 45 
D0T C5  H5  SING N N 46 
D0T C6  H6  SING N N 47 
D0T C16 H7  SING N N 48 
D0T C17 H8  SING N N 49 
D0T C18 H9  SING N N 50 
D0T C19 H10 SING N N 51 
D0T C20 H11 SING N N 52 
D0T C21 H12 SING N N 53 
D0T C21 H13 SING N N 54 
D0T C23 H14 SING N N 55 
D0T C24 H15 SING N N 56 
D0T C24 H16 SING N N 57 
D0T C25 H17 SING N N 58 
D0T C25 H18 SING N N 59 
D0T C26 H19 SING N N 60 
D0T C26 H20 SING N N 61 
D0T C26 H21 SING N N 62 
D0T C27 H22 SING N N 63 
D0T C27 H23 SING N N 64 
D0T C28 H24 SING N N 65 
D0T C28 H25 SING N N 66 
D0T C29 H26 SING N N 67 
D0T C29 H27 SING N N 68 
D0T N1  H28 SING N N 69 
D0T O2  H30 SING N N 70 
D0T O4  H31 SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D0T SMILES           ACDLabs              12.01 "O=C(NCc1ccccc1)c2ccccc2CN(C)Cc4ccc3OC(COc3c4C(=O)O)CCC(=O)O" 
D0T InChI            InChI                1.03  
"InChI=1S/C29H30N2O7/c1-31(16-20-9-5-6-10-23(20)28(34)30-15-19-7-3-2-4-8-19)17-21-11-13-24-27(26(21)29(35)36)37-18-22(38-24)12-14-25(32)33/h2-11,13,22H,12,14-18H2,1H3,(H,30,34)(H,32,33)(H,35,36)/t22-/m0/s1" 
D0T InChIKey         InChI                1.03  RDFKANMJCXGBBA-QFIPXVFZSA-N 
D0T SMILES_CANONICAL CACTVS               3.385 "CN(Cc1ccccc1C(=O)NCc2ccccc2)Cc3ccc4O[C@@H](CCC(O)=O)COc4c3C(O)=O" 
D0T SMILES           CACTVS               3.385 "CN(Cc1ccccc1C(=O)NCc2ccccc2)Cc3ccc4O[CH](CCC(O)=O)COc4c3C(O)=O" 
D0T SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CN(Cc1ccccc1C(=O)NCc2ccccc2)Cc3ccc4c(c3C(=O)O)OC[C@@H](O4)CCC(=O)O" 
D0T SMILES           "OpenEye OEToolkits" 1.7.6 "CN(Cc1ccccc1C(=O)NCc2ccccc2)Cc3ccc4c(c3C(=O)O)OCC(O4)CCC(=O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D0T "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-6-({[2-(benzylcarbamoyl)benzyl](methyl)amino}methyl)-2-(2-carboxyethyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid"                       
D0T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-(3-hydroxy-3-oxopropyl)-6-[[methyl-[[2-[(phenylmethyl)carbamoyl]phenyl]methyl]amino]methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D0T "Create component"   2013-11-13 EBI  
D0T "Initial release"    2013-11-20 RCSB 
D0T "Other modification" 2014-04-29 EBI  
# 
