data_AGT
# 
_chem_comp.id                                    AGT 
_chem_comp.name                                  "S-{(S)-AMINO[(4-AMINOBUTYL)AMINO]METHYL}-L-CYSTEINE" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C8 H20 N4 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               CYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-08-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        236.335 
_chem_comp.one_letter_code                       C 
_chem_comp.three_letter_code                     AGT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2JER 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
AGT O    O    O 0 1 N N N N N N 24.295 -3.567 64.540 4.717  -1.410 -1.022 O    AGT 1  
AGT C    C    C 0 1 N N N N N N 23.569 -2.965 65.314 3.919  -1.494 -0.119 C    AGT 2  
AGT CA   CA   C 0 1 N N R N N N 23.406 -1.438 65.243 3.376  -0.245 0.526  CA   AGT 3  
AGT N    N    N 0 1 N N N N N N 22.407 -0.934 66.186 4.276  0.881  0.247  N    AGT 4  
AGT CB   CB   C 0 1 N N N N N N 24.759 -0.971 65.658 1.987  0.059  -0.040 CB   AGT 5  
AGT SG   SG   S 0 1 N N N N N N 25.749 -1.150 64.155 1.334  1.562  0.737  SG   AGT 6  
AGT CZ   CZ   C 0 1 N N S N N N 26.142 0.567  64.542 -0.289 1.755  -0.050 CZ   AGT 7  
AGT NH2  NH2  N 0 1 N N N N N N 25.182 0.952  65.668 -0.116 1.899  -1.502 NH2  AGT 8  
AGT NE   NE   N 0 1 N N N N N N 27.542 0.562  64.953 -1.113 0.572  0.230  NE   AGT 9  
AGT CD   CD   C 0 1 N N N N N N 28.341 -0.434 64.213 -2.527 0.830  -0.075 CD   AGT 10 
AGT CG   CG   C 0 1 N N N N N N 29.767 0.027  64.457 -3.351 -0.423 0.229  CG   AGT 11 
AGT CK   CK   C 0 1 N N N N N N 30.261 -0.718 65.621 -4.823 -0.154 -0.088 CK   AGT 12 
AGT CJ   CJ   C 0 1 N N N N N N 31.403 -1.588 65.112 -5.648 -1.407 0.215  CJ   AGT 13 
AGT NB   NB   N 0 1 N N N N N N 32.447 -1.367 66.083 -7.061 -1.148 -0.089 NB   AGT 14 
AGT OXT  OXT  O 0 1 N Y N N N N 22.878 -3.589 66.546 3.512  -2.701 0.307  OXT  AGT 15 
AGT HA   HA   H 0 1 N N N N N N 23.068 -1.096 64.254 3.304  -0.394 1.604  HA   AGT 16 
AGT HOT  HOT  H 0 1 N Y N N N N 23.106 -4.509 66.605 3.885  -3.473 -0.140 HOT  AGT 17 
AGT HN1  HN1  H 0 1 N N N N N N 22.339 0.060  66.101 5.182  0.733  0.667  HN1  AGT 18 
AGT HN2  HN2  H 0 1 N N N N N N 21.519 -1.347 65.983 4.359  1.040  -0.746 HN2  AGT 19 
AGT HB   HB   H 0 1 N N N N N N 24.736 0.073  66.004 2.059  0.208  -1.117 HB   AGT 20 
AGT HZ   HZ   H 0 1 N N N N N N 26.026 1.288  63.719 -0.782 2.643  0.346  HZ   AGT 21 
AGT HH21 HH21 H 0 0 N N N N N N 25.345 1.902  65.936 0.339  1.088  -1.894 HH21 AGT 22 
AGT HH22 HH22 H 0 0 N N N N N N 24.239 0.853  65.350 -1.000 2.072  -1.956 HH22 AGT 23 
AGT HE   HE   H 0 1 N N N N N N 27.927 1.469  64.781 -0.775 -0.232 -0.278 HE   AGT 24 
AGT HDC1 HDC1 H 0 0 N N N N N N 28.172 -1.453 64.591 -2.885 1.658  0.538  HDC1 AGT 25 
AGT HDC2 HDC2 H 0 0 N N N N N N 28.093 -0.440 63.141 -2.630 1.086  -1.129 HDC2 AGT 26 
AGT HGC1 HGC1 H 0 0 N N N N N N 30.392 -0.181 63.576 -2.993 -1.251 -0.383 HGC1 AGT 27 
AGT HGC2 HGC2 H 0 0 N N N N N N 29.791 1.108  64.656 -3.247 -0.679 1.283  HGC2 AGT 28 
AGT HKC1 HKC1 H 0 0 N N N N N N 30.617 -0.028 66.400 -5.181 0.674  0.524  HKC1 AGT 29 
AGT HKC2 HKC2 H 0 0 N N N N N N 29.462 -1.340 66.050 -4.927 0.103  -1.143 HKC2 AGT 30 
AGT HJC1 HJC1 H 0 0 N N N N N N 31.113 -2.648 65.063 -5.289 -2.234 -0.397 HJC1 AGT 31 
AGT HJC2 HJC2 H 0 0 N N N N N N 31.720 -1.289 64.102 -5.544 -1.663 1.270  HJC2 AGT 32 
AGT HBN1 HBN1 H 0 0 N N N N N N 33.253 -1.903 65.834 -7.176 -0.846 -1.045 HBN1 AGT 33 
AGT HBN2 HBN2 H 0 0 N N N N N N 32.685 -0.396 66.101 -7.627 -1.961 0.103  HBN2 AGT 34 
AGT HB2  HB2  H 0 1 N N N N N N 25.161 -1.581 66.480 1.319  -0.777 0.168  HB2  AGT 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
AGT O   C    DOUB N N 1  
AGT C   CA   SING N N 2  
AGT C   OXT  SING N N 3  
AGT CA  N    SING N N 4  
AGT CA  CB   SING N N 5  
AGT CA  HA   SING N N 6  
AGT N   HN1  SING N N 7  
AGT N   HN2  SING N N 8  
AGT CB  SG   SING N N 9  
AGT CB  HB   SING N N 10 
AGT CB  HB2  SING N N 11 
AGT SG  CZ   SING N N 12 
AGT CZ  NH2  SING N N 13 
AGT CZ  NE   SING N N 14 
AGT CZ  HZ   SING N N 15 
AGT NH2 HH21 SING N N 16 
AGT NH2 HH22 SING N N 17 
AGT NE  CD   SING N N 18 
AGT NE  HE   SING N N 19 
AGT CD  CG   SING N N 20 
AGT CD  HDC1 SING N N 21 
AGT CD  HDC2 SING N N 22 
AGT CG  CK   SING N N 23 
AGT CG  HGC1 SING N N 24 
AGT CG  HGC2 SING N N 25 
AGT CK  CJ   SING N N 26 
AGT CK  HKC1 SING N N 27 
AGT CK  HKC2 SING N N 28 
AGT CJ  NB   SING N N 29 
AGT CJ  HJC1 SING N N 30 
AGT CJ  HJC2 SING N N 31 
AGT NB  HBN1 SING N N 32 
AGT NB  HBN2 SING N N 33 
AGT OXT HOT  SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
AGT SMILES           ACDLabs              12.01 "O=C(O)C(N)CSC(NCCCCN)N"                                                                              
AGT InChI            InChI                1.03  "InChI=1S/C8H20N4O2S/c9-3-1-2-4-12-8(11)15-5-6(10)7(13)14/h6,8,12H,1-5,9-11H2,(H,13,14)/t6-,8-/m0/s1" 
AGT InChIKey         InChI                1.03  GZLBOQUKGXMSFX-XPUUQOCRSA-N                                                                           
AGT SMILES_CANONICAL CACTVS               3.370 "NCCCCN[C@H](N)SC[C@H](N)C(O)=O"                                                                      
AGT SMILES           CACTVS               3.370 "NCCCCN[CH](N)SC[CH](N)C(O)=O"                                                                        
AGT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C(CCN[C@H](N)SC[C@@H](C(=O)O)N)CN"                                                                   
AGT SMILES           "OpenEye OEToolkits" 1.7.2 "C(CCNC(N)SCC(C(=O)O)N)CN"                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
AGT "SYSTEMATIC NAME" ACDLabs              12.01 "S-{(S)-amino[(4-aminobutyl)amino]methyl}-L-cysteine"                            
AGT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2R)-2-azanyl-3-[(S)-azanyl-(4-azanylbutylamino)methyl]sulfanyl-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
AGT "Create component"      2006-08-17 EBI  
AGT "Modify descriptor"     2011-06-04 RCSB 
AGT "Modify parent residue" 2011-08-04 RCSB 
AGT "Modify PCM"            2024-09-27 PDBE 
# 
