data_A3T
# 
_chem_comp.id                                    A3T 
_chem_comp.name                                  "3'-deoxy-3'-(L-threonylamino)adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H21 N7 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-11-18 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        367.360 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A3T 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3PD3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A3T C      C      C 0 1 N N N 7.971  4.283 -14.222 -3.450 0.355  -0.760 C      A3T 1  
A3T N      N      N 0 1 N N N 7.969  2.142 -13.052 -5.617 1.377  -1.166 N      A3T 2  
A3T O      O      O 0 1 N N N 9.175  4.588 -13.671 -3.879 -0.627 -1.328 O      A3T 3  
A3T N1     N1     N 0 1 Y N N 14.013 7.145 -16.833 5.427  2.045  0.276  N1     A3T 4  
A3T C2     C2     C 0 1 Y N N 13.349 6.004 -16.893 4.216  2.545  0.442  C2     A3T 5  
A3T N3     N3     N 0 1 Y N N 12.076 5.955 -17.243 3.134  1.796  0.429  N3     A3T 6  
A3T C4     C4     C 0 1 Y N N 11.408 7.077 -17.548 3.222  0.482  0.247  C4     A3T 7  
A3T C5     C5     C 0 1 Y N N 12.071 8.296 -17.490 4.488  -0.099 0.065  C5     A3T 8  
A3T C6     C6     C 0 1 Y N N 13.411 8.307 -17.124 5.614  0.743  0.086  C6     A3T 9  
A3T N6     N6     N 0 1 N N N 14.088 9.452 -17.086 6.886  0.228  -0.087 N6     A3T 10 
A3T N7     N7     N 0 1 Y N N 11.199 9.242 -17.824 4.297  -1.430 -0.097 N7     A3T 11 
A3T C8     C8     C 0 1 Y N N 10.037 8.648 -18.085 3.025  -1.697 -0.028 C8     A3T 12 
A3T N8     N8     N 0 1 N N N 7.491  4.831 -15.336 -2.135 0.454  -0.484 N8     A3T 13 
A3T N9     N9     N 0 1 Y N N 10.159 7.332 -17.927 2.320  -0.549 0.183  N9     A3T 14 
A3T CA     CA     C 0 1 N N S 7.104  3.232 -13.526 -4.388 1.467  -0.367 CA     A3T 15 
A3T CB     CB     C 0 1 N N R 6.359  3.844 -12.338 -4.734 1.341  1.118  CB     A3T 16 
A3T OG     OG     O 0 1 N N N 5.388  2.900 -11.876 -5.258 0.037  1.376  OG     A3T 17 
A3T "C1'"  "C1'"  C 0 1 N N R 9.104  6.342 -18.244 0.865  -0.439 0.317  "C1'"  A3T 18 
A3T "C2'"  "C2'"  C 0 1 N N R 9.022  5.186 -17.245 0.217  -0.082 -1.045 "C2'"  A3T 19 
A3T "O2'"  "O2'"  O 0 1 N N N 8.268  4.116 -17.822 0.207  1.333  -1.250 "O2'"  A3T 20 
A3T "C3'"  "C3'"  C 0 1 N N S 8.212  5.838 -16.128 -1.222 -0.625 -0.872 "C3'"  A3T 21 
A3T "C4'"  "C4'"  C 0 1 N N S 7.207  6.681 -16.914 -1.100 -1.662 0.262  "C4'"  A3T 22 
A3T "O4'"  "O4'"  O 0 1 N N N 7.827  6.999 -18.173 0.285  -1.721 0.640  "O4'"  A3T 23 
A3T "C5'"  "C5'"  C 0 1 N N N 6.891  7.953 -16.124 -1.562 -3.033 -0.235 "C5'"  A3T 24 
A3T "O5'"  "O5'"  O 0 1 N N N 8.104  8.635 -15.795 -1.556 -3.961 0.852  "O5'"  A3T 25 
A3T CG2    CG2    C 0 1 N N N 5.707  5.179 -12.706 -5.781 2.394  1.489  CG2    A3T 26 
A3T HN     HN     H 0 1 N N N 7.412  1.449 -12.595 -5.423 1.521  -2.145 HN     A3T 27 
A3T HNA    HNA    H 0 1 N N N 8.442  1.729 -13.831 -6.082 0.494  -1.016 HNA    A3T 28 
A3T H2     H2     H 0 1 N N N 13.862 5.085 -16.649 4.110  3.609  0.593  H2     A3T 29 
A3T HN6    HN6    H 0 1 N N N 15.035 9.271 -16.822 7.655  0.819  -0.071 HN6    A3T 30 
A3T HN6A   HN6A   H 0 0 N N N 14.070 9.880 -17.990 7.010  -0.725 -0.224 HN6A   A3T 31 
A3T H8     H8     H 0 1 N N N 9.131  9.157 -18.380 2.592  -2.681 -0.124 H8     A3T 32 
A3T HN8    HN8    H 0 1 N N N 6.588  4.541 -15.652 -1.792 1.239  -0.029 HN8    A3T 33 
A3T HA     HA     H 0 1 N N N 6.362  2.848 -14.241 -3.907 2.429  -0.547 HA     A3T 34 
A3T HB     HB     H 0 1 N N N 7.076  4.062 -11.533 -3.836 1.497  1.716  HB     A3T 35 
A3T HOG    HOG    H 0 1 N N N 4.916  3.266 -11.137 -6.060 -0.171 0.878  HOG    A3T 36 
A3T "H1'"  "H1'"  H 0 1 N N N 9.353  5.941 -19.238 0.606  0.304  1.072  "H1'"  A3T 37 
A3T "H2'"  "H2'"  H 0 1 N N N 9.990  4.767 -16.932 0.729  -0.588 -1.864 "H2'"  A3T 38 
A3T "HO2'" "HO2'" H 0 0 N N N 8.215  3.396 -17.204 1.087  1.733  -1.275 "HO2'" A3T 39 
A3T "H3'"  "H3'"  H 0 1 N N N 8.833  6.402 -15.416 -1.564 -1.101 -1.791 "H3'"  A3T 40 
A3T "H4'"  "H4'"  H 0 1 N N N 6.262  6.144 -17.081 -1.704 -1.352 1.114  "H4'"  A3T 41 
A3T "H5'"  "H5'"  H 0 1 N N N 6.256  8.612 -16.734 -2.572 -2.952 -0.638 "H5'"  A3T 42 
A3T "H5'A" "H5'A" H 0 0 N N N 6.361  7.685 -15.198 -0.887 -3.383 -1.015 "H5'A" A3T 43 
A3T "HO5'" "HO5'" H 0 0 N N N 7.902  9.423 -15.305 -1.839 -4.853 0.609  "HO5'" A3T 44 
A3T HG2    HG2    H 0 1 N N N 5.183  5.586 -11.829 -6.680 2.238  0.891  HG2    A3T 45 
A3T HG2A   HG2A   H 0 0 N N N 6.482  5.888 -13.031 -6.028 2.304  2.547  HG2A   A3T 46 
A3T HG2B   HG2B   H 0 0 N N N 4.987  5.022 -13.523 -5.382 3.389  1.292  HG2B   A3T 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A3T C     O      DOUB N N 1  
A3T C     N8     SING N N 2  
A3T C     CA     SING N N 3  
A3T N     CA     SING N N 4  
A3T N1    C2     DOUB Y N 5  
A3T N1    C6     SING Y N 6  
A3T C2    N3     SING Y N 7  
A3T N3    C4     DOUB Y N 8  
A3T C4    C5     SING Y N 9  
A3T C4    N9     SING Y N 10 
A3T C5    C6     DOUB Y N 11 
A3T C5    N7     SING Y N 12 
A3T C6    N6     SING N N 13 
A3T N7    C8     DOUB Y N 14 
A3T C8    N9     SING Y N 15 
A3T N8    "C3'"  SING N N 16 
A3T N9    "C1'"  SING N N 17 
A3T CA    CB     SING N N 18 
A3T CB    OG     SING N N 19 
A3T CB    CG2    SING N N 20 
A3T "C1'" "C2'"  SING N N 21 
A3T "C1'" "O4'"  SING N N 22 
A3T "C2'" "O2'"  SING N N 23 
A3T "C2'" "C3'"  SING N N 24 
A3T "C3'" "C4'"  SING N N 25 
A3T "C4'" "O4'"  SING N N 26 
A3T "C4'" "C5'"  SING N N 27 
A3T "C5'" "O5'"  SING N N 28 
A3T N     HN     SING N N 29 
A3T N     HNA    SING N N 30 
A3T C2    H2     SING N N 31 
A3T N6    HN6    SING N N 32 
A3T N6    HN6A   SING N N 33 
A3T C8    H8     SING N N 34 
A3T N8    HN8    SING N N 35 
A3T CA    HA     SING N N 36 
A3T CB    HB     SING N N 37 
A3T OG    HOG    SING N N 38 
A3T "C1'" "H1'"  SING N N 39 
A3T "C2'" "H2'"  SING N N 40 
A3T "O2'" "HO2'" SING N N 41 
A3T "C3'" "H3'"  SING N N 42 
A3T "C4'" "H4'"  SING N N 43 
A3T "C5'" "H5'"  SING N N 44 
A3T "C5'" "H5'A" SING N N 45 
A3T "O5'" "HO5'" SING N N 46 
A3T CG2   HG2    SING N N 47 
A3T CG2   HG2A   SING N N 48 
A3T CG2   HG2B   SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A3T SMILES           ACDLabs              12.01 "O=C(NC3C(OC(n2cnc1c(ncnc12)N)C3O)CO)C(N)C(O)C"                                                                                                                                   
A3T SMILES_CANONICAL CACTVS               3.370 "C[C@@H](O)[C@H](N)C(=O)N[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO)n2cnc3c(N)ncnc23"                                                                                                       
A3T SMILES           CACTVS               3.370 "C[CH](O)[CH](N)C(=O)N[CH]1[CH](O)[CH](O[CH]1CO)n2cnc3c(N)ncnc23"                                                                                                                 
A3T SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@H]([C@@H](C(=O)N[C@@H]1[C@H](O[C@H]([C@@H]1O)n2cnc3c2ncnc3N)CO)N)O"                                                                                                          
A3T SMILES           "OpenEye OEToolkits" 1.7.0 "CC(C(C(=O)NC1C(OC(C1O)n2cnc3c2ncnc3N)CO)N)O"                                                                                                                                     
A3T InChI            InChI                1.03  "InChI=1S/C14H21N7O5/c1-5(23)7(15)13(25)20-8-6(2-22)26-14(10(8)24)21-4-19-9-11(16)17-3-18-12(9)21/h3-8,10,14,22-24H,2,15H2,1H3,(H,20,25)(H2,16,17,18)/t5-,6-,7+,8-,10-,14-/m1/s1" 
A3T InChIKey         InChI                1.03  JYCQZCJEBNTMCV-JHJLZTHQSA-N                                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A3T "SYSTEMATIC NAME" ACDLabs              12.01 "3'-deoxy-3'-(L-threonylamino)adenosine"                                                                               
A3T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,3R)-N-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl]-2-azanyl-3-hydroxy-butanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A3T "Create component"     2010-11-18 PDBJ 
A3T "Modify aromatic_flag" 2011-06-04 RCSB 
A3T "Modify descriptor"    2011-06-04 RCSB 
# 
