data_A1ICT
# 
_chem_comp.id                                    A1ICT 
_chem_comp.name                                  "7-methyl-3-[[4-oxidanyl-1-[(3~{R},4~{R})-3-phenyl-1-[(5-pyrimidin-5-ylthiophen-2-yl)methyl]piperidin-4-yl]carbonyl-piperidin-4-yl]methyl]pyrrolo[2,3-d]pyrimidin-4-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H37 N7 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-06-04 
_chem_comp.pdbx_modified_date                    2024-11-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        623.768 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ICT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9FIT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ICT O03 O1  O 0 1 N N N N N N -70.411 -1.755  -10.092 6.366   -1.018 0.209  O03 A1ICT 1  
A1ICT C04 C1  C 0 1 N N N N N N -70.672 -2.686  -9.376  6.826   0.077  -0.064 C04 A1ICT 2  
A1ICT C14 C2  C 0 1 Y N N N N N -71.848 -3.212  -9.385  7.894   0.625  0.683  C14 A1ICT 3  
A1ICT C12 C3  C 0 1 Y N N N N N -72.909 -2.888  -10.066 8.685   0.178  1.826  C12 A1ICT 4  
A1ICT C10 C4  C 0 1 Y N N N N N -73.889 -3.667  -9.744  9.573   1.154  2.086  C10 A1ICT 5  
A1ICT N09 N1  N 0 1 Y N N N N N -73.402 -4.515  -8.841  9.403   2.180  1.195  N09 A1ICT 6  
A1ICT C05 C5  C 0 1 N N N N N N -74.141 -5.593  -8.182  10.194  3.413  1.173  C05 A1ICT 7  
A1ICT C15 C6  C 0 1 Y N N N N N -72.149 -4.226  -8.613  8.390   1.887  0.330  C15 A1ICT 8  
A1ICT N16 N2  N 0 1 N N N N N N -71.283 -4.775  -7.785  7.836   2.539  -0.706 N16 A1ICT 9  
A1ICT C17 C7  C 0 1 N N N N N N -70.028 -4.258  -7.768  6.852   2.021  -1.383 C17 A1ICT 10 
A1ICT N19 N3  N 0 1 N N N N N N -69.737 -3.172  -8.600  6.333   0.800  -1.095 N19 A1ICT 11 
A1ICT C20 C8  C 0 1 N N N N N N -68.376 -2.619  -8.613  5.230   0.268  -1.900 C20 A1ICT 12 
A1ICT C80 C9  C 0 1 N N N N N N -67.587 -3.424  -9.712  3.897   0.704  -1.289 C80 A1ICT 13 
A1ICT C81 C10 C 0 1 N N N N N N -68.221 -3.405  -11.143 2.746   0.047  -2.055 C81 A1ICT 14 
A1ICT C70 C11 C 0 1 N N N N N N -67.420 -4.383  -12.045 1.413   0.513  -1.463 C70 A1ICT 15 
A1ICT O01 O2  O 0 1 N N N N N N -67.621 -4.768  -9.237  3.776   2.126  -1.376 O01 A1ICT 16 
A1ICT C77 C12 C 0 1 N N N N N N -66.154 -2.942  -9.842  3.844   0.277  0.179  C77 A1ICT 17 
A1ICT C74 C13 C 0 1 N N N N N N -65.385 -4.022  -10.527 2.523   0.746  0.796  C74 A1ICT 18 
A1ICT N73 N4  N 0 1 N N N N N N -65.938 -4.123  -11.901 1.413   0.237  -0.020 N73 A1ICT 19 
A1ICT C69 C14 C 0 1 N N N N N N -65.153 -3.811  -12.925 0.414   -0.471 0.544  C69 A1ICT 20 
A1ICT O68 O3  O 0 1 N N N N N N -63.987 -3.495  -12.752 0.469   -0.768 1.719  O68 A1ICT 21 
A1ICT C66 C15 C 0 1 N N R N N N -65.872 -3.662  -14.261 -0.772  -0.892 -0.285 C66 A1ICT 22 
A1ICT C64 C16 C 0 1 N N R N N N -65.445 -2.317  -14.849 -1.448  -2.102 0.367  C64 A1ICT 23 
A1ICT C50 C17 C 0 1 N N N N N N -65.681 -2.203  -16.418 -2.686  -2.487 -0.446 C50 A1ICT 24 
A1ICT C63 C18 C 0 1 Y N N N N N -66.055 -1.328  -14.087 -0.485  -3.260 0.397  C63 A1ICT 25 
A1ICT C53 C19 C 0 1 Y N N N N N -65.260 -0.591  -13.231 -0.117  -3.822 1.605  C53 A1ICT 26 
A1ICT C55 C20 C 0 1 Y N N N N N -65.784 0.377   -12.407 0.766   -4.885 1.633  C55 A1ICT 27 
A1ICT C57 C21 C 0 1 Y N N N N N -67.132 0.615   -12.460 1.281   -5.387 0.452  C57 A1ICT 28 
A1ICT C59 C22 C 0 1 Y N N N N N -67.949 -0.122  -13.305 0.913   -4.825 -0.757 C59 A1ICT 29 
A1ICT C61 C23 C 0 1 Y N N N N N -67.423 -1.104  -14.121 0.025   -3.766 -0.784 C61 A1ICT 30 
A1ICT C23 C24 C 0 1 N N N N N N -65.751 -4.832  -15.206 -1.775  0.262  -0.367 C23 A1ICT 31 
A1ICT C26 C25 C 0 1 N N N N N N -66.413 -4.409  -16.498 -3.004  -0.192 -1.158 C26 A1ICT 32 
A1ICT N48 N5  N 0 1 N N N N N N -65.508 -3.462  -17.174 -3.615  -1.351 -0.493 N48 A1ICT 33 
A1ICT C45 C26 C 0 1 N N N N N N -65.917 -3.350  -18.604 -4.876  -1.728 -1.146 C45 A1ICT 34 
A1ICT C44 C27 C 0 1 Y N N N N N -65.377 -4.482  -19.537 -5.889  -0.629 -0.956 C44 A1ICT 35 
A1ICT S29 S1  S 0 1 Y N N N N N -66.291 -5.815  -20.020 -7.015  -0.513 0.391  S29 A1ICT 36 
A1ICT C42 C28 C 0 1 Y N N N N N -64.130 -4.546  -20.041 -6.064  0.407  -1.781 C42 A1ICT 37 
A1ICT C40 C29 C 0 1 Y N N N N N -63.928 -5.633  -20.788 -7.053  1.293  -1.406 C40 A1ICT 38 
A1ICT C39 C30 C 0 1 Y N N N N N -65.004 -6.413  -20.876 -7.688  0.976  -0.260 C39 A1ICT 39 
A1ICT C38 C31 C 0 1 Y N N N N N -65.026 -7.559  -21.505 -8.781  1.759  0.355  C38 A1ICT 40 
A1ICT C30 C32 C 0 1 Y N N N N N -63.820 -8.110  -21.937 -9.378  1.344  1.551  C30 A1ICT 41 
A1ICT N32 N6  N 0 1 Y N N N N N -63.859 -9.361  -22.571 -10.352 2.075  2.066  N32 A1ICT 42 
A1ICT C33 C33 C 0 1 Y N N N N N -65.089 -10.069 -22.758 -10.761 3.178  1.469  C33 A1ICT 43 
A1ICT N35 N7  N 0 1 Y N N N N N -66.288 -9.528  -22.305 -10.226 3.604  0.342  N35 A1ICT 44 
A1ICT C36 C34 C 0 1 Y N N N N N -66.232 -8.277  -21.671 -9.243  2.938  -0.239 C36 A1ICT 45 
A1ICT H12 H1  H 0 1 N N N N N N -72.962 -2.089  -10.791 8.577   -0.754 2.360  H12 A1ICT 46 
A1ICT H10 H2  H 0 1 N N N N N N -74.897 -3.636  -10.129 10.308  1.133  2.877  H10 A1ICT 47 
A1ICT H05 H3  H 0 1 N N N N N N -73.474 -6.124  -7.487  11.063  3.276  0.530  H05 A1ICT 48 
A1ICT H06 H4  H 0 1 N N N N N N -74.989 -5.169  -7.625  9.583   4.230  0.789  H06 A1ICT 49 
A1ICT H07 H5  H 0 1 N N N N N N -74.516 -6.297  -8.940  10.524  3.651  2.185  H07 A1ICT 50 
A1ICT H17 H6  H 0 1 N N N N N N -69.269 -4.677  -7.124  6.437   2.581  -2.209 H17 A1ICT 51 
A1ICT H21 H7  H 0 1 N N N N N N -67.901 -2.750  -7.629  5.306   0.649  -2.918 H21 A1ICT 52 
A1ICT H20 H8  H 0 1 N N N N N N -68.401 -1.549  -8.868  5.284   -0.821 -1.914 H20 A1ICT 53 
A1ICT H82 H9  H 0 1 N N N N N N -68.169 -2.388  -11.559 2.798   0.334  -3.105 H82 A1ICT 54 
A1ICT H81 H10 H 0 1 N N N N N N -69.272 -3.726  -11.088 2.824   -1.036 -1.969 H81 A1ICT 55 
A1ICT H70 H11 H 0 1 N N N N N N -67.715 -4.236  -13.094 1.293   1.584  -1.629 H70 A1ICT 56 
A1ICT H71 H12 H 0 1 N N N N N N -67.639 -5.418  -11.744 0.593   -0.026 -1.938 H71 A1ICT 57 
A1ICT H01 H13 H 0 1 N N N N N N -67.241 -4.807  -8.367  4.474   2.609  -0.912 H01 A1ICT 58 
A1ICT H78 H14 H 0 1 N N N N N N -65.729 -2.751  -8.846  3.911   -0.809 0.245  H78 A1ICT 59 
A1ICT H77 H15 H 0 1 N N N N N N -66.120 -2.019  -10.439 4.678   0.726  0.719  H77 A1ICT 60 
A1ICT H75 H16 H 0 1 N N N N N N -65.512 -4.976  -9.995  2.436   0.359  1.812  H75 A1ICT 61 
A1ICT H74 H17 H 0 1 N N N N N N -64.317 -3.763  -10.565 2.495   1.835  0.816  H74 A1ICT 62 
A1ICT H66 H18 H 0 1 N N N N N N -66.942 -3.566  -14.024 -0.439  -1.158 -1.288 H66 A1ICT 63 
A1ICT H64 H19 H 0 1 N N N N N N -64.357 -2.243  -14.702 -1.744  -1.848 1.385  H64 A1ICT 64 
A1ICT H50 H20 H 0 1 N N N N N N -64.968 -1.466  -16.817 -2.387  -2.754 -1.459 H50 A1ICT 65 
A1ICT H51 H21 H 0 1 N N N N N N -66.708 -1.846  -16.582 -3.178  -3.339 0.024  H51 A1ICT 66 
A1ICT H53 H22 H 0 1 N N N N N N -64.197 -0.780  -13.208 -0.519  -3.430 2.528  H53 A1ICT 67 
A1ICT H55 H23 H 0 1 N N N N N N -65.149 0.935   -11.735 1.055   -5.323 2.576  H55 A1ICT 68 
A1ICT H57 H24 H 0 1 N N N N N N -67.563 1.385   -11.837 1.971   -6.217 0.473  H57 A1ICT 69 
A1ICT H59 H25 H 0 1 N N N N N N -69.011 0.075   -13.325 1.315   -5.217 -1.679 H59 A1ICT 70 
A1ICT H61 H26 H 0 1 N N N N N N -68.062 -1.684  -14.770 -0.266  -3.330 -1.729 H61 A1ICT 71 
A1ICT H24 H27 H 0 1 N N N N N N -66.261 -5.713  -14.788 -2.077  0.554  0.639  H24 A1ICT 72 
A1ICT H23 H28 H 0 1 N N N N N N -64.692 -5.071  -15.382 -1.312  1.112  -0.869 H23 A1ICT 73 
A1ICT H27 H29 H 0 1 N N N N N N -67.375 -3.920  -16.284 -3.726  0.623  -1.206 H27 A1ICT 74 
A1ICT H26 H30 H 0 1 N N N N N N -66.582 -5.288  -17.138 -2.703  -0.470 -2.168 H26 A1ICT 75 
A1ICT H46 H32 H 0 1 N N N N N N -65.551 -2.387  -18.989 -4.701  -1.881 -2.211 H46 A1ICT 76 
A1ICT H45 H33 H 0 1 N N N N N N -67.016 -3.368  -18.647 -5.253  -2.650 -0.704 H45 A1ICT 77 
A1ICT H42 H34 H 0 1 N N N N N N -63.373 -3.797  -19.860 -5.475  0.540  -2.677 H42 A1ICT 78 
A1ICT H40 H35 H 0 1 N N N N N N -62.989 -5.857  -21.272 -7.297  2.172  -1.983 H40 A1ICT 79 
A1ICT H30 H36 H 0 1 N N N N N N -62.885 -7.590  -21.788 -9.049  0.442  2.045  H30 A1ICT 80 
A1ICT H33 H37 H 0 1 N N N N N N -65.086 -11.029 -23.254 -11.559 3.749  1.918  H33 A1ICT 81 
A1ICT H36 H38 H 0 1 N N N N N N -67.148 -7.846  -21.295 -8.810  3.295  -1.162 H36 A1ICT 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ICT C33 N32 DOUB Y N 1  
A1ICT C33 N35 SING Y N 2  
A1ICT N32 C30 SING Y N 3  
A1ICT N35 C36 DOUB Y N 4  
A1ICT C30 C38 DOUB Y N 5  
A1ICT C36 C38 SING Y N 6  
A1ICT C38 C39 SING N N 7  
A1ICT C39 C40 DOUB Y N 8  
A1ICT C39 S29 SING Y N 9  
A1ICT C40 C42 SING Y N 10 
A1ICT C42 C44 DOUB Y N 11 
A1ICT S29 C44 SING Y N 12 
A1ICT C44 C45 SING N N 13 
A1ICT C45 N48 SING N N 14 
A1ICT N48 C26 SING N N 15 
A1ICT N48 C50 SING N N 16 
A1ICT C26 C23 SING N N 17 
A1ICT C50 C64 SING N N 18 
A1ICT C23 C66 SING N N 19 
A1ICT C64 C66 SING N N 20 
A1ICT C64 C63 SING N N 21 
A1ICT C66 C69 SING N N 22 
A1ICT C61 C63 DOUB Y N 23 
A1ICT C61 C59 SING Y N 24 
A1ICT C63 C53 SING Y N 25 
A1ICT C59 C57 DOUB Y N 26 
A1ICT C53 C55 DOUB Y N 27 
A1ICT C69 O68 DOUB N N 28 
A1ICT C69 N73 SING N N 29 
A1ICT C57 C55 SING Y N 30 
A1ICT C70 N73 SING N N 31 
A1ICT C70 C81 SING N N 32 
A1ICT N73 C74 SING N N 33 
A1ICT C81 C80 SING N N 34 
A1ICT C74 C77 SING N N 35 
A1ICT O03 C04 DOUB N N 36 
A1ICT C12 C10 DOUB Y N 37 
A1ICT C12 C14 SING Y N 38 
A1ICT C77 C80 SING N N 39 
A1ICT C10 N09 SING Y N 40 
A1ICT C80 O01 SING N N 41 
A1ICT C80 C20 SING N N 42 
A1ICT C14 C04 SING N N 43 
A1ICT C14 C15 DOUB Y N 44 
A1ICT C04 N19 SING N N 45 
A1ICT N09 C15 SING Y N 46 
A1ICT N09 C05 SING N N 47 
A1ICT C15 N16 SING N N 48 
A1ICT C20 N19 SING N N 49 
A1ICT N19 C17 SING N N 50 
A1ICT N16 C17 DOUB N N 51 
A1ICT C12 H12 SING N N 52 
A1ICT C10 H10 SING N N 53 
A1ICT C05 H05 SING N N 54 
A1ICT C05 H06 SING N N 55 
A1ICT C05 H07 SING N N 56 
A1ICT C17 H17 SING N N 57 
A1ICT C20 H21 SING N N 58 
A1ICT C20 H20 SING N N 59 
A1ICT C81 H82 SING N N 60 
A1ICT C81 H81 SING N N 61 
A1ICT C70 H70 SING N N 62 
A1ICT C70 H71 SING N N 63 
A1ICT O01 H01 SING N N 64 
A1ICT C77 H78 SING N N 65 
A1ICT C77 H77 SING N N 66 
A1ICT C74 H75 SING N N 67 
A1ICT C74 H74 SING N N 68 
A1ICT C66 H66 SING N N 69 
A1ICT C64 H64 SING N N 70 
A1ICT C50 H50 SING N N 71 
A1ICT C50 H51 SING N N 72 
A1ICT C53 H53 SING N N 73 
A1ICT C55 H55 SING N N 74 
A1ICT C57 H57 SING N N 75 
A1ICT C59 H59 SING N N 76 
A1ICT C61 H61 SING N N 77 
A1ICT C23 H24 SING N N 78 
A1ICT C23 H23 SING N N 79 
A1ICT C26 H27 SING N N 80 
A1ICT C26 H26 SING N N 81 
A1ICT C45 H46 SING N N 82 
A1ICT C45 H45 SING N N 83 
A1ICT C42 H42 SING N N 84 
A1ICT C40 H40 SING N N 85 
A1ICT C30 H30 SING N N 86 
A1ICT C33 H33 SING N N 87 
A1ICT C36 H36 SING N N 88 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ICT InChI            InChI                1.06  "InChI=1S/C34H37N7O3S/c1-38-13-9-28-31(38)37-23-41(33(28)43)21-34(44)11-15-40(16-12-34)32(42)27-10-14-39(20-29(27)24-5-3-2-4-6-24)19-26-7-8-30(45-26)25-17-35-22-36-18-25/h2-9,13,17-18,22-23,27,29,44H,10-12,14-16,19-21H2,1H3/t27-,29+/m1/s1" 
A1ICT InChIKey         InChI                1.06  NZZFXHIASCZNOO-PXJZQJOASA-N                                                                                                                                                                                                                     
A1ICT SMILES_CANONICAL CACTVS               3.385 "Cn1ccc2C(=O)N(CC3(O)CCN(CC3)C(=O)[C@@H]4CCN(C[C@H]4c5ccccc5)Cc6sc(cc6)c7cncnc7)C=Nc12"                                                                                                                                                         
A1ICT SMILES           CACTVS               3.385 "Cn1ccc2C(=O)N(CC3(O)CCN(CC3)C(=O)[CH]4CCN(C[CH]4c5ccccc5)Cc6sc(cc6)c7cncnc7)C=Nc12"                                                                                                                                                            
A1ICT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1ccc2c1N=CN(C2=O)CC3(CCN(CC3)C(=O)[C@@H]4CCN(C[C@H]4c5ccccc5)Cc6ccc(s6)c7cncnc7)O"                                                                                                                                                           
A1ICT SMILES           "OpenEye OEToolkits" 2.0.7 "Cn1ccc2c1N=CN(C2=O)CC3(CCN(CC3)C(=O)C4CCN(CC4c5ccccc5)Cc6ccc(s6)c7cncnc7)O"                                                                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           A1ICT 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-methyl-3-[[4-oxidanyl-1-[(3~{R},4~{R})-3-phenyl-1-[(5-pyrimidin-5-ylthiophen-2-yl)methyl]piperidin-4-yl]carbonyl-piperidin-4-yl]methyl]pyrrolo[2,3-d]pyrimidin-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ICT "Create component" 2024-06-04 PDBE 
A1ICT "Initial release"  2024-11-06 RCSB 
# 
