data_88T
# 
_chem_comp.id                                    88T 
_chem_comp.name                                  "(1~{R},4~{R},11~{S},14~{S},19~{Z})-19-[2-[2,5-bis(oxidanylidene)pyrrolidin-1-yl]ethylimino]-7,8,17,18-tetraoxa-1,4,11,14-tetrazatricyclo[12.6.2.2^{4,11}]tetracosane-6,9,16-trione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H32 N6 O9" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-10-07 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        524.524 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     88T 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7PH3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
88T N2  N1  N 0 1 N N N N N N 133.025 154.148 217.362 -4.324 0.498  -0.287 N2  88T 1  
88T O2  O1  O 0 1 N N N N N N 133.666 152.541 215.758 -4.966 -1.389 -1.369 O2  88T 2  
88T N3  N2  N 0 1 N N N N N N 135.781 153.401 219.803 -0.733 0.194  -1.245 N3  88T 3  
88T O3  O2  O 0 1 N N N N N N 131.610 155.750 218.370 -4.132 2.288  1.092  O3  88T 4  
88T C4  C1  C 0 1 N N N N N N 131.372 153.312 215.781 -6.282 -0.508 0.468  C4  88T 5  
88T N4  N3  N 0 1 N N R N N N 139.164 151.970 218.548 2.213  -1.257 -2.452 N4  88T 6  
88T O4  O3  O 0 1 N N N N N N 136.446 151.823 218.233 -0.494 -2.063 -1.259 O4  88T 7  
88T C5  C2  C 0 1 N N N N N N 132.824 153.236 216.242 -5.131 -0.546 -0.514 C5  88T 8  
88T N5  N4  N 0 1 N N R N N N 140.175 152.585 215.913 3.291  2.183  -1.073 N5  88T 9  
88T O5  O4  O 0 1 N N N N N N 137.775 154.495 216.989 0.454  3.226  -1.732 O5  88T 10 
88T C6  C3  C 0 1 N N N N N N 130.649 154.094 216.873 -6.001 0.756  1.306  C6  88T 11 
88T N6  N5  N 0 1 N N S N N N 139.019 150.359 214.677 3.229  0.429  2.223  N6  88T 12 
88T O6  O5  O 0 1 N N N N N N 137.397 153.692 214.997 0.172  2.459  0.302  O6  88T 13 
88T C7  C4  C 0 1 N N N N N N 131.757 154.819 217.657 -4.715 1.294  0.716  C7  88T 14 
88T N7  N6  N 0 1 N N S N N N 138.165 149.563 217.402 2.514  -3.016 0.935  N7  88T 15 
88T O7  O6  O 0 1 N N N N N N 135.229 149.751 215.638 -0.432 -2.884 1.996  O7  88T 16 
88T C8  C5  C 0 1 N N N N N N 134.307 154.359 218.084 -3.110 0.745  -1.068 C8  88T 17 
88T O8  O7  O 0 1 N N N N N N 135.736 151.187 217.205 -0.742 -2.216 -0.057 O8  88T 18 
88T C9  C6  C 0 1 N N N N N N 134.381 153.419 219.316 -1.926 0.034  -0.409 C9  88T 19 
88T O9  O8  O 0 1 N N N N N N 136.986 152.344 214.251 0.634  2.263  1.441  O9  88T 20 
88T C10 C7  C 0 1 N N N N N N 136.781 152.511 219.137 -0.136 -0.856 -1.737 C10 88T 21 
88T O10 O9  O 0 1 N N N N N N 138.030 152.782 212.389 0.120  0.155  1.244  O10 88T 22 
88T C11 C8  C 0 1 N N N N N N 138.263 152.484 219.639 0.863  -0.651 -2.827 C11 88T 23 
88T C12 C9  C 0 1 N N N N N N 140.292 152.933 218.369 3.048  -0.073 -1.997 C12 88T 24 
88T C13 C10 C 0 1 N N N N N N 141.089 152.567 217.070 2.264  1.095  -1.443 C13 88T 25 
88T C14 C11 C 0 1 N N N N N N 139.720 153.956 215.646 2.416  3.247  -0.442 C14 88T 26 
88T C15 C12 C 0 1 N N N N N N 138.208 154.051 215.891 0.964  2.957  -0.656 C15 88T 27 
88T C16 C13 C 0 1 N N N N N N 140.861 152.028 214.713 4.021  1.539  0.102  C16 88T 28 
88T C17 C14 C 0 1 N N N N N N 140.491 150.528 214.575 3.336  1.734  1.429  C17 88T 29 
88T C18 C15 C 0 1 N N N N N N 138.726 148.978 215.067 3.039  -0.607 1.125  C18 88T 30 
88T C19 C16 C 0 1 N N N N N N 139.083 148.766 216.553 2.064  -1.690 1.551  C19 88T 31 
88T C20 C17 C 0 1 N N N N N N 136.799 149.007 217.332 1.209  -3.689 0.531  C20 88T 32 
88T C21 C18 C 0 1 N N N N N N 135.865 150.044 216.684 -0.018 -2.899 0.830  C21 88T 33 
88T C22 C19 C 0 1 N N N N N N 139.728 150.655 218.967 1.830  -1.900 -1.124 C22 88T 34 
88T C23 C20 C 0 1 N N N N N N 138.648 149.554 218.806 3.014  -2.568 -0.453 C23 88T 35 
88T C24 C21 C 0 1 N N N N N N 138.415 150.606 213.363 1.829  0.578  2.814  C24 88T 36 
88T C25 C22 C 0 1 N N N N N N 137.769 151.992 213.333 0.827  0.972  1.789  C25 88T 37 
88T H1  H1  H 0 1 N N N N N N 131.300 153.838 214.817 -7.232 -0.411 -0.058 H1  88T 38 
88T H2  H2  H 0 1 N N N N N N 130.945 152.303 215.681 -6.280 -1.398 1.097  H2  88T 39 
88T H5  H5  H 0 1 N N N N N N 129.953 154.821 216.429 -6.811 1.477  1.197  H5  88T 40 
88T H6  H6  H 0 1 N N N N N N 130.094 153.411 217.533 -5.856 0.496  2.355  H6  88T 41 
88T H9  H9  H 0 1 N N N N N N 135.147 154.140 217.408 -3.245 0.364  -2.080 H9  88T 42 
88T H10 H10 H 0 1 N N N N N N 134.369 155.405 218.419 -2.914 1.817  -1.106 H10 88T 43 
88T H11 H11 H 0 1 N N N N N N 133.716 153.792 220.109 -2.154 -1.026 -0.300 H11 88T 44 
88T H12 H12 H 0 1 N N N N N N 134.074 152.403 219.028 -1.742 0.469  0.573  H12 88T 45 
88T H13 H13 H 0 1 N N N N N N 138.339 151.824 220.516 0.985  0.382  -3.108 H13 88T 46 
88T H14 H14 H 0 1 N N N N N N 138.572 153.502 219.918 0.518  -1.178 -3.733 H14 88T 47 
88T H15 H15 H 0 1 N N N N N N 140.963 152.878 219.239 3.738  -0.472 -1.247 H15 88T 48 
88T H16 H16 H 0 1 N N N N N N 139.892 153.954 218.279 3.652  0.246  -2.854 H16 88T 49 
88T H17 H17 H 0 1 N N N N N N 141.525 151.563 217.178 1.655  0.862  -0.600 H17 88T 50 
88T H18 H18 H 0 1 N N N N N N 141.893 153.301 216.914 1.678  1.560  -2.248 H18 88T 51 
88T H19 H19 H 0 1 N N N N N N 139.939 154.218 214.600 2.675  3.487  0.561  H19 88T 52 
88T H20 H20 H 0 1 N N N N N N 140.244 154.653 216.316 2.636  4.172  -1.020 H20 88T 53 
88T H21 H21 H 0 1 N N N N N N 141.950 152.131 214.829 4.264  0.513  -0.108 H21 88T 54 
88T H22 H22 H 0 1 N N N N N N 140.535 152.573 213.815 5.007  2.052  0.144  H22 88T 55 
88T H23 H23 H 0 1 N N N N N N 140.980 149.956 215.377 2.391  2.199  1.385  H23 88T 56 
88T H24 H24 H 0 1 N N N N N N 140.834 150.156 213.598 3.982  2.388  2.052  H24 88T 57 
88T H25 H25 H 0 1 N N N N N N 137.655 148.776 214.916 2.690  -0.127 0.237  H25 88T 58 
88T H26 H26 H 0 1 N N N N N N 139.320 148.290 214.447 4.031  -1.064 0.973  H26 88T 59 
88T H27 H27 H 0 1 N N N N N N 138.983 147.700 216.805 1.076  -1.426 1.214  H27 88T 60 
88T H28 H28 H 0 1 N N N N N N 140.119 149.089 216.730 2.068  -1.828 2.630  H28 88T 61 
88T H29 H29 H 0 1 N N N N N N 136.444 148.775 218.347 1.259  -4.005 -0.504 H29 88T 62 
88T H30 H30 H 0 1 N N N N N N 136.806 148.089 216.727 1.169  -4.636 1.113  H30 88T 63 
88T H31 H31 H 0 1 N N N N N N 140.597 150.411 218.338 1.405  -1.151 -0.484 H31 88T 64 
88T H32 H32 H 0 1 N N N N N N 140.042 150.709 220.020 1.160  -2.713 -1.434 H32 88T 65 
88T H33 H33 H 0 1 N N N N N N 137.809 149.756 219.488 3.876  -1.945 -0.380 H33 88T 66 
88T H34 H34 H 0 1 N N N N N N 139.083 148.572 219.042 3.262  -3.486 -1.005 H34 88T 67 
88T H35 H35 H 0 1 N N N N N N 137.648 149.843 213.166 1.553  -0.345 3.314  H35 88T 68 
88T H36 H36 H 0 1 N N N N N N 139.194 150.551 212.588 1.891  1.365  3.580  H36 88T 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
88T O10 C25 DOUB N N 1  
88T C25 C24 SING N N 2  
88T C25 O9  SING N N 3  
88T C24 N6  SING N N 4  
88T O9  O6  SING N N 5  
88T C17 N6  SING N N 6  
88T C17 C16 SING N N 7  
88T N6  C18 SING N N 8  
88T C16 N5  SING N N 9  
88T O6  C15 SING N N 10 
88T C18 C19 SING N N 11 
88T O7  C21 DOUB N N 12 
88T C14 C15 SING N N 13 
88T C14 N5  SING N N 14 
88T O2  C5  DOUB N N 15 
88T C4  C5  SING N N 16 
88T C4  C6  SING N N 17 
88T C15 O5  DOUB N N 18 
88T N5  C13 SING N N 19 
88T C5  N2  SING N N 20 
88T C19 N7  SING N N 21 
88T C21 O8  SING N N 22 
88T C21 C20 SING N N 23 
88T C6  C7  SING N N 24 
88T C13 C12 SING N N 25 
88T O8  O4  SING N N 26 
88T C20 N7  SING N N 27 
88T N2  C7  SING N N 28 
88T N2  C8  SING N N 29 
88T N7  C23 SING N N 30 
88T C7  O3  DOUB N N 31 
88T C8  C9  SING N N 32 
88T O4  C10 SING N N 33 
88T C12 N4  SING N N 34 
88T N4  C22 SING N N 35 
88T N4  C11 SING N N 36 
88T C23 C22 SING N N 37 
88T C10 C11 SING N N 38 
88T C10 N3  DOUB N N 39 
88T C9  N3  SING N N 40 
88T C4  H1  SING N N 41 
88T C4  H2  SING N N 42 
88T C6  H5  SING N N 43 
88T C6  H6  SING N N 44 
88T C8  H9  SING N N 45 
88T C8  H10 SING N N 46 
88T C9  H11 SING N N 47 
88T C9  H12 SING N N 48 
88T C11 H13 SING N N 49 
88T C11 H14 SING N N 50 
88T C12 H15 SING N N 51 
88T C12 H16 SING N N 52 
88T C13 H17 SING N N 53 
88T C13 H18 SING N N 54 
88T C14 H19 SING N N 55 
88T C14 H20 SING N N 56 
88T C16 H21 SING N N 57 
88T C16 H22 SING N N 58 
88T C17 H23 SING N N 59 
88T C17 H24 SING N N 60 
88T C18 H25 SING N N 61 
88T C18 H26 SING N N 62 
88T C19 H27 SING N N 63 
88T C19 H28 SING N N 64 
88T C20 H29 SING N N 65 
88T C20 H30 SING N N 66 
88T C22 H31 SING N N 67 
88T C22 H32 SING N N 68 
88T C23 H33 SING N N 69 
88T C23 H34 SING N N 70 
88T C24 H35 SING N N 71 
88T C24 H36 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
88T InChI            InChI                1.06  "InChI=1S/C22H32N6O9/c29-18-1-2-19(30)28(18)4-3-23-17-13-24-5-7-25(14-20(31)35-34-17)9-11-27-12-10-26(8-6-24)15-21(32)36-37-22(33)16-27/h1-16H2/b23-17-" 
88T InChIKey         InChI                1.06  KCVYYVOXIBCERI-QJOMJCCJSA-N                                                                                                                              
88T SMILES_CANONICAL CACTVS               3.385 "O=C1C[N@@]2CC[N@@](CC[N@]3CC[N@@](CC2)CC(=O)OOC(C3)=NCCN4C(=O)CCC4=O)CC(=O)OO1"                                                                         
88T SMILES           CACTVS               3.385 "O=C1C[N]2CC[N](CC[N]3CC[N](CC2)CC(=O)OOC(C3)=NCCN4C(=O)CCC4=O)CC(=O)OO1"                                                                                
88T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CC(=O)N(C1=O)CC/N=C\2/C[N@@]3CC[N@@](CC[N@]4CC[N@@](CC3)CC(=O)OOC(=O)C4)CC(=O)OO2"                                                                    
88T SMILES           "OpenEye OEToolkits" 2.0.7 "C1CC(=O)N(C1=O)CCN=C2CN3CCN(CCN4CCN(CC3)CC(=O)OOC(=O)C4)CC(=O)OO2"                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           88T 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(1~{R},4~{R},11~{S},14~{S},19~{Z})-19-[2-[2,5-bis(oxidanylidene)pyrrolidin-1-yl]ethylimino]-7,8,17,18-tetraoxa-1,4,11,14-tetrazatricyclo[12.6.2.2^{4,11}]tetracosane-6,9,16-trione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
88T "Create component"  2021-10-07 PDBE 
88T "Initial release"   2022-08-24 RCSB 
88T "Modify descriptor" 2022-08-22 RCSB 
88T "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            88T 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C4 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
