data_84T
# 
_chem_comp.id                                    84T 
_chem_comp.name                                  "[(2S,4S,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-2-yl]methoxy-N-[(2S,3R)-4-methyl-2,3-bis(oxidanyl)pentanoyl]phosphonamidic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H25 N6 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-12-19 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        460.379 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     84T 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3ZGZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
84T O1P    O1P    O 0 1 N N N -49.578 32.814 -40.538 -2.480 3.455  -0.724 O1P    84T 1  
84T P      P      P 0 1 N N N -49.265 32.333 -39.135 -2.381 2.242  0.329  P      84T 2  
84T O2P    O2P    O 0 1 N N N -48.474 31.075 -38.859 -2.071 2.780  1.673  O2P    84T 3  
84T N      N      N 0 1 N N N -48.565 33.569 -38.261 -3.811 1.441  0.377  N      84T 4  
84T C      C      C 0 1 N N N -48.351 33.427 -36.937 -4.298 0.864  -0.739 C      84T 5  
84T CA     CA     C 0 1 N N S -47.743 34.630 -36.252 -5.612 0.128  -0.695 CA     84T 6  
84T CB     CB     C 0 1 N N R -48.782 35.258 -35.352 -5.480 -1.098 0.211  CB     84T 7  
84T CG     CG     C 0 1 N N N -48.290 36.481 -34.568 -6.790 -1.888 0.193  CG     84T 8  
84T CD2    CD2    C 0 1 N N N -47.177 36.161 -33.565 -6.614 -3.186 0.984  CD2    84T 9  
84T CD1    CD1    C 0 1 N N N -49.451 37.151 -33.839 -7.900 -1.050 0.831  CD1    84T 10 
84T OHB    OHB    O 0 1 N N N -49.867 35.626 -36.217 -4.417 -1.927 -0.262 OHB    84T 11 
84T OH     OH     O 0 1 N N N -47.369 35.619 -37.234 -5.968 -0.291 -2.014 OH     84T 12 
84T O      O      O 0 1 N N N -48.619 32.410 -36.291 -3.678 0.937  -1.779 O      84T 13 
84T "O5'"  "O5'"  O 0 1 N N N -50.702 32.131 -38.479 -1.214 1.230  -0.125 "O5'"  84T 14 
84T "C5'"  "C5'"  C 0 1 N N N -51.578 33.249 -38.423 -0.738 0.169  0.704  "C5'"  84T 15 
84T "C4'"  "C4'"  C 0 1 N N S -52.631 33.077 -37.337 0.366  -0.595 -0.029 "C4'"  84T 16 
84T "C3'"  "C3'"  C 0 1 N N N -52.042 32.629 -35.995 0.810  -1.824 0.796  "C3'"  84T 17 
84T "C2'"  "C2'"  C 0 1 N N S -53.173 31.816 -35.398 2.336  -1.900 0.565  "C2'"  84T 18 
84T "O2'"  "O2'"  O 0 1 N N N -52.747 30.801 -34.497 3.038  -1.752 1.801  "O2'"  84T 19 
84T "O4'"  "O4'"  O 0 1 N N N -53.575 32.089 -37.723 1.553  0.221  -0.143 "O4'"  84T 20 
84T "C1'"  "C1'"  C 0 1 N N R -53.857 31.236 -36.601 2.634  -0.709 -0.373 "C1'"  84T 21 
84T N9     N9     N 0 1 Y N N -53.380 29.885 -36.975 3.917  -0.094 -0.025 N9     84T 22 
84T C4     C4     C 0 1 Y N N -54.141 28.804 -36.839 5.155  -0.497 -0.460 C4     84T 23 
84T N3     N3     N 0 1 Y N N -55.395 28.643 -36.335 5.601  -1.465 -1.254 N3     84T 24 
84T C2     C2     C 0 1 Y N N -55.946 27.418 -36.310 6.889  -1.601 -1.487 C2     84T 25 
84T C8     C8     C 0 1 Y N N -52.215 29.513 -37.562 4.101  0.986  0.786  C8     84T 26 
84T N7     N7     N 0 1 Y N N -52.239 28.172 -37.766 5.369  1.263  0.877  N7     84T 27 
84T C5     C5     C 0 1 Y N N -53.427 27.715 -37.331 6.078  0.383  0.129  C5     84T 28 
84T C6     C6     C 0 1 Y N N -54.037 26.471 -37.288 7.443  0.198  -0.150 C6     84T 29 
84T N1     N1     N 0 1 Y N N -55.281 26.346 -36.770 7.794  -0.799 -0.956 N1     84T 30 
84T N6     N6     N 0 1 N N N -53.403 25.375 -37.741 8.398  1.033  0.401  N6     84T 31 
84T H1P    H1P    H 0 1 N N N -49.205 32.211 -41.170 -2.681 3.176  -1.628 H1P    84T 32 
84T H      H      H 0 1 N N N -48.303 34.418 -38.720 -4.307 1.383  1.209  H      84T 33 
84T HA     HA     H 0 1 N N N -46.871 34.320 -35.657 -6.385 0.789  -0.303 HA     84T 34 
84T HB     HB     H 0 1 N N N -49.125 34.501 -34.631 -5.264 -0.775 1.229  HB     84T 35 
84T HH     HH     H 0 1 N N N -46.988 36.372 -36.797 -5.323 -0.882 -2.427 HH     84T 36 
84T HG     HG     H 0 1 N N N -47.888 37.203 -35.294 -7.059 -2.124 -0.837 HG     84T 37 
84T HHB    HHB    H 0 1 N N N -50.558 36.030 -35.705 -4.543 -2.251 -1.164 HHB    84T 38 
84T HD21   HD21   H 0 0 N N N -46.877 37.082 -33.043 -7.570 -3.705 1.049  HD21   84T 39 
84T HD22   HD22   H 0 0 N N N -47.544 35.427 -32.832 -5.888 -3.823 0.478  HD22   84T 40 
84T HD23   HD23   H 0 0 N N N -46.311 35.744 -34.099 -6.256 -2.954 1.987  HD23   84T 41 
84T HD11   HD11   H 0 0 N N N -49.080 38.025 -33.283 -8.026 -0.125 0.268  HD11   84T 42 
84T HD12   HD12   H 0 0 N N N -50.205 37.475 -34.571 -8.833 -1.613 0.818  HD12   84T 43 
84T HD13   HD13   H 0 0 N N N -49.905 36.436 -33.137 -7.632 -0.814 1.860  HD13   84T 44 
84T "H5'1" "H5'1" H 0 0 N N N -50.990 34.154 -38.211 -0.339 0.582  1.631  "H5'1" 84T 45 
84T "H5'2" "H5'2" H 0 0 N N N -52.081 33.358 -39.395 -1.559 -0.510 0.933  "H5'2" 84T 46 
84T "H4'"  "H4'"  H 0 1 N N N -53.139 34.041 -37.188 0.021  -0.906 -1.015 "H4'"  84T 47 
84T "H3'1" "H3'1" H 0 0 N N N -51.143 32.012 -36.141 0.591  -1.673 1.853  "H3'1" 84T 48 
84T "H3'2" "H3'2" H 0 0 N N N -51.795 33.493 -35.361 0.323  -2.727 0.429  "H3'2" 84T 49 
84T "H2'"  "H2'"  H 0 1 N N N -53.868 32.501 -34.890 2.603  -2.842 0.086  "H2'"  84T 50 
84T HC     HC     H 0 1 N N N -53.505 30.335 -34.164 2.841  -2.441 2.450  HC     84T 51 
84T H8     H8     H 0 1 N N N -51.403 30.175 -37.824 3.311  1.531  1.280  H8     84T 52 
84T H2     H2     H 0 1 N N N -56.942 27.293 -35.913 7.218  -2.398 -2.137 H2     84T 53 
84T HN61   HN61   H 0 0 N N N -53.990 24.575 -37.617 8.129  1.756  0.989  HN61   84T 54 
84T HN62   HN62   H 0 0 N N N -53.194 25.488 -38.712 9.337  0.895  0.201  HN62   84T 55 
84T "HC1'" "HC1'" H 0 0 N N N -54.941 31.202 -36.418 2.638  -1.036 -1.412 "HC1'" 84T 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
84T O1P   P      SING N N 1  
84T P     O2P    DOUB N N 2  
84T P     N      SING N N 3  
84T P     "O5'"  SING N N 4  
84T N     C      SING N N 5  
84T C     CA     SING N N 6  
84T C     O      DOUB N N 7  
84T CA    CB     SING N N 8  
84T CA    OH     SING N N 9  
84T CB    CG     SING N N 10 
84T CB    OHB    SING N N 11 
84T CG    CD2    SING N N 12 
84T CG    CD1    SING N N 13 
84T "O5'" "C5'"  SING N N 14 
84T "C5'" "C4'"  SING N N 15 
84T "C4'" "C3'"  SING N N 16 
84T "C4'" "O4'"  SING N N 17 
84T "C3'" "C2'"  SING N N 18 
84T "C2'" "O2'"  SING N N 19 
84T "C2'" "C1'"  SING N N 20 
84T "O4'" "C1'"  SING N N 21 
84T "C1'" N9     SING N N 22 
84T N9    C4     SING Y N 23 
84T N9    C8     SING Y N 24 
84T C4    N3     SING Y N 25 
84T C4    C5     DOUB Y N 26 
84T N3    C2     DOUB Y N 27 
84T C2    N1     SING Y N 28 
84T C8    N7     DOUB Y N 29 
84T N7    C5     SING Y N 30 
84T C5    C6     SING Y N 31 
84T C6    N1     DOUB Y N 32 
84T "C1'" "HC1'" SING N N 33 
84T O1P   H1P    SING N N 34 
84T N     H      SING N N 35 
84T CA    HA     SING N N 36 
84T CB    HB     SING N N 37 
84T OH    HH     SING N N 38 
84T CG    HG     SING N N 39 
84T OHB   HHB    SING N N 40 
84T CD2   HD21   SING N N 41 
84T CD2   HD22   SING N N 42 
84T CD2   HD23   SING N N 43 
84T CD1   HD11   SING N N 44 
84T CD1   HD12   SING N N 45 
84T CD1   HD13   SING N N 46 
84T "C5'" "H5'1" SING N N 47 
84T "C5'" "H5'2" SING N N 48 
84T "C4'" "H4'"  SING N N 49 
84T "C3'" "H3'1" SING N N 50 
84T "C3'" "H3'2" SING N N 51 
84T "C2'" "H2'"  SING N N 52 
84T "O2'" HC     SING N N 53 
84T C8    H8     SING N N 54 
84T C2    H2     SING N N 55 
84T C6    N6     SING N N 56 
84T N6    HN61   SING N N 57 
84T N6    HN62   SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
84T SMILES           ACDLabs              12.01 "O=C(NP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3)C(O)C(O)C(C)C"                                                                                                                                                 
84T InChI            InChI                1.03  "InChI=1S/C16H25N6O8P/c1-7(2)11(24)12(25)15(26)21-31(27,28)29-4-8-3-9(23)16(30-8)22-6-20-10-13(17)18-5-19-14(10)22/h5-9,11-12,16,23-25H,3-4H2,1-2H3,(H2,17,18,19)(H2,21,26,27,28)/t8-,9-,11+,12-,16+/m0/s1" 
84T InChIKey         InChI                1.03  KHSKVNAFZAVNFC-UVIICUSPSA-N                                                                                                                                                                                 
84T SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@@H](O)[C@H](O)C(=O)N[P](O)(=O)OC[C@@H]1C[C@H](O)[C@@H](O1)n2cnc3c(N)ncnc23"                                                                                                                        
84T SMILES           CACTVS               3.385 "CC(C)[CH](O)[CH](O)C(=O)N[P](O)(=O)OC[CH]1C[CH](O)[CH](O1)n2cnc3c(N)ncnc23"                                                                                                                                
84T SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC(C)[C@H]([C@@H](C(=O)NP(=O)(O)OC[C@@H]1C[C@@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)O"                                                                                                                           
84T SMILES           "OpenEye OEToolkits" 1.9.2 "CC(C)C(C(C(=O)NP(=O)(O)OCC1CC(C(O1)n2cnc3c2ncnc3N)O)O)O"                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
84T "SYSTEMATIC NAME" ACDLabs              12.01 "[(2S,4S,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxytetrahydrofuran-2-yl]methyl hydrogen (S)-[(2S,3R)-2,3-dihydroxy-4-methylpentanoyl]phosphoramidate (non-preferred name)" 
84T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(2S,4S,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-2-yl]methoxy-N-[(2S,3R)-4-methyl-2,3-bis(oxidanyl)pentanoyl]phosphonamidic acid"                                   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
84T "Create component"  2012-12-19 EBI  
84T "Initial release"   2013-01-25 RCSB 
84T "Modify descriptor" 2014-09-05 RCSB 
# 
