data_7QT
# 
_chem_comp.id                                    7QT 
_chem_comp.name                                  "[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl phosphono hydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H16 F N5 O10 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         AT-8500 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-12 
_chem_comp.pdbx_modified_date                    2024-07-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        459.218 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7QT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PIE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7QT "C1'" C1  C 0 1 N N R N N N 34.742 34.325 42.141 1.888  0.664  0.348  "C1'" 7QT 1  
7QT C2    C2  C 0 1 N N N N N N 34.283 38.380 40.836 6.048  -0.618 1.399  C2    7QT 2  
7QT "C2'" C3  C 0 1 N N R N N N 33.792 33.303 41.459 2.117  2.060  -0.274 "C2'" 7QT 3  
7QT C3    C4  C 0 1 N N N N N N 33.369 33.827 40.076 2.750  1.932  -1.661 C3    7QT 4  
7QT "C3'" C5  C 0 1 N N R N N N 34.626 32.039 41.565 0.698  2.661  -0.380 "C3'" 7QT 5  
7QT C4    C6  C 0 1 Y N N N N N 35.381 36.464 41.012 4.072  -0.601 0.203  C4    7QT 6  
7QT "C4'" C7  C 0 1 N N R N N N 35.285 32.186 42.935 -0.221 1.557  0.190  "C4'" 7QT 7  
7QT C5    C8  C 0 1 Y N N N N N 36.493 36.917 40.338 4.567  -1.589 -0.655 C5    7QT 8  
7QT "C5'" C9  C 0 1 N N N N N N 36.594 31.475 43.137 -1.534 1.500  -0.593 "C5'" 7QT 9  
7QT C6    C10 C 0 1 N N N N N N 36.526 38.251 39.861 5.876  -2.081 -0.438 C6    7QT 10 
7QT C8    C11 C 0 1 Y N N N N N 36.914 34.907 40.903 2.562  -1.106 -1.321 C8    7QT 11 
7QT F4    F1  F 0 1 N N N N N N 32.661 33.186 42.345 2.920  2.843  0.562  F4    7QT 12 
7QT N1    N1  N 0 1 N N N N N N 35.324 38.923 40.121 6.588  -1.577 0.594  N1    7QT 13 
7QT N2    N2  N 0 1 N N N N N N 33.204 39.146 41.036 6.795  -0.124 2.439  N2    7QT 14 
7QT N3    N3  N 0 1 N N N N N N 34.262 37.147 41.331 4.836  -0.149 1.204  N3    7QT 15 
7QT N7    N4  N 0 1 Y N N N N N 37.456 35.920 40.263 3.598  -1.855 -1.565 N7    7QT 16 
7QT N9    N5  N 0 1 Y N N N N N 35.636 35.155 41.327 2.808  -0.314 -0.237 N9    7QT 17 
7QT O1A   O1  O 0 1 N N N N N N 39.480 31.278 43.112 -3.775 -0.441 -1.996 O1A   7QT 18 
7QT O1B   O2  O 0 1 N N N N N N 36.974 27.111 41.609 -6.998 -0.037 1.370  O1B   7QT 19 
7QT O2A   O3  O 0 1 N N N N N N 39.345 31.194 40.494 -4.659 1.498  -0.645 O2A   7QT 20 
7QT O2B   O4  O 0 1 N N N N N N 37.554 28.734 39.574 -6.772 -1.510 -0.668 O2B   7QT 21 
7QT "O3'" O5  O 0 1 N N N N N N 33.863 30.863 41.580 0.598  3.851  0.406  "O3'" 7QT 22 
7QT O3A   O6  O 0 1 N N N N N N 38.254 29.420 41.833 -4.641 -0.769 0.465  O3A   7QT 23 
7QT O3B   O7  O 0 1 N N N N N N 35.798 29.049 41.541 -6.233 -2.545 1.571  O3B   7QT 24 
7QT "O4'" O8  O 0 1 N N N N N N 35.582 33.586 43.019 0.522  0.332  0.015  "O4'" 7QT 25 
7QT "O5'" O9  O 0 1 N N N N N N 37.464 31.854 42.049 -2.414 0.556  0.021  "O5'" 7QT 26 
7QT O6    O10 O 0 1 N N N N N N 37.451 38.801 39.254 6.349  -2.939 -1.164 O6    7QT 27 
7QT PA    P1  P 0 1 N N N N N N 38.766 30.957 41.850 -3.889 0.239  -0.541 PA    7QT 28 
7QT PB    P2  P 0 1 N N N N N N 37.122 28.494 41.062 -6.174 -1.221 0.655  PB    7QT 29 
7QT H1    H1  H 0 1 N N N N N N 34.111 34.996 42.743 2.016  0.705  1.429  H1    7QT 30 
7QT H4    H2  H 0 1 N N N N N N 32.775 34.745 40.197 2.840  2.920  -2.112 H4    7QT 31 
7QT H2    H3  H 0 1 N N N N N N 34.265 34.047 39.477 3.739  1.483  -1.569 H2    7QT 32 
7QT H3    H4  H 0 1 N N N N N N 32.764 33.064 39.564 2.122  1.301  -2.290 H3    7QT 33 
7QT H5    H5  H 0 1 N N N N N N 35.393 32.022 40.777 0.448  2.869  -1.420 H5    7QT 34 
7QT H6    H6  H 0 1 N N N N N N 34.573 31.889 43.719 -0.416 1.735  1.248  H6    7QT 35 
7QT H8    H7  H 0 1 N N N N N N 36.436 30.386 43.130 -2.001 2.485  -0.592 H8    7QT 36 
7QT H7    H8  H 0 1 N N N N N N 37.040 31.774 44.097 -1.332 1.195  -1.620 H7    7QT 37 
7QT H9    H9  H 0 1 N N N N N N 37.426 33.972 41.077 1.645  -1.111 -1.891 H9    7QT 38 
7QT H10   H10 H 0 1 N N N N N N 35.217 39.852 39.766 7.487  -1.898 0.762  H10   7QT 39 
7QT H12   H11 H 0 1 N N N N N N 32.421 38.784 41.542 6.426  0.561  3.018  H12   7QT 40 
7QT H11   H12 H 0 1 N N N N N N 33.181 40.080 40.679 7.691  -0.461 2.595  H11   7QT 41 
7QT H13   H13 H 0 1 N N N N N N 40.333 31.645 42.909 -3.281 -1.273 -2.004 H13   7QT 42 
7QT H14   H14 H 0 1 N N N N N N 37.177 26.478 40.930 -6.662 0.205  2.243  H14   7QT 43 
7QT H16   H15 H 0 1 N N N N N N 34.440 30.111 41.647 -0.273 4.270  0.375  H16   7QT 44 
7QT H15   H16 H 0 1 N N N N N N 35.368 29.504 40.827 -7.129 -2.874 1.728  H15   7QT 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7QT O6    C6    DOUB N N 1  
7QT O2B   PB    DOUB N N 2  
7QT C6    N1    SING N N 3  
7QT C6    C5    SING N N 4  
7QT C3    "C2'" SING N N 5  
7QT N1    C2    SING N N 6  
7QT N7    C5    SING Y N 7  
7QT N7    C8    DOUB Y N 8  
7QT C5    C4    DOUB Y N 9  
7QT O2A   PA    DOUB N N 10 
7QT C2    N2    SING N N 11 
7QT C2    N3    DOUB N N 12 
7QT C8    N9    SING Y N 13 
7QT C4    N9    SING Y N 14 
7QT C4    N3    SING N N 15 
7QT PB    O3B   SING N N 16 
7QT PB    O1B   SING N N 17 
7QT PB    O3A   SING N N 18 
7QT N9    "C1'" SING N N 19 
7QT "C2'" "C3'" SING N N 20 
7QT "C2'" "C1'" SING N N 21 
7QT "C2'" F4    SING N N 22 
7QT "C3'" "O3'" SING N N 23 
7QT "C3'" "C4'" SING N N 24 
7QT O3A   PA    SING N N 25 
7QT PA    "O5'" SING N N 26 
7QT PA    O1A   SING N N 27 
7QT "O5'" "C5'" SING N N 28 
7QT "C1'" "O4'" SING N N 29 
7QT "C4'" "O4'" SING N N 30 
7QT "C4'" "C5'" SING N N 31 
7QT "C1'" H1    SING N N 32 
7QT C3    H4    SING N N 33 
7QT C3    H2    SING N N 34 
7QT C3    H3    SING N N 35 
7QT "C3'" H5    SING N N 36 
7QT "C4'" H6    SING N N 37 
7QT "C5'" H8    SING N N 38 
7QT "C5'" H7    SING N N 39 
7QT C8    H9    SING N N 40 
7QT N1    H10   SING N N 41 
7QT N2    H12   SING N N 42 
7QT N2    H11   SING N N 43 
7QT O1A   H13   SING N N 44 
7QT O1B   H14   SING N N 45 
7QT "O3'" H16   SING N N 46 
7QT O3B   H15   SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7QT InChI            InChI                1.06  "InChI=1S/C11H16FN5O10P2/c1-11(12)6(18)4(2-25-29(23,24)27-28(20,21)22)26-9(11)17-3-14-5-7(17)15-10(13)16-8(5)19/h3-4,6,9,18H,2H2,1H3,(H,23,24)(H2,20,21,22)(H3,13,15,16,19)/t4-,6-,9-,11-/m1/s1" 
7QT InChIKey         InChI                1.06  LEEQMJUVDQBILY-GITKWUPZSA-N                                                                                                                                                                      
7QT SMILES_CANONICAL CACTVS               3.385 "C[C@@]1(F)[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(O)=O)O[C@H]1n2cnc3C(=O)NC(=Nc23)N"                                                                                                                 
7QT SMILES           CACTVS               3.385 "C[C]1(F)[CH](O)[CH](CO[P](O)(=O)O[P](O)(O)=O)O[CH]1n2cnc3C(=O)NC(=Nc23)N"                                                                                                                       
7QT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@]1([C@@H]([C@H](O[C@H]1n2cnc3c2N=C(NC3=O)N)COP(=O)(O)OP(=O)(O)O)O)F"                                                                                                                        
7QT SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C(C(OC1n2cnc3c2N=C(NC3=O)N)COP(=O)(O)OP(=O)(O)O)O)F"                                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           7QT 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7QT "Create component" 2023-07-12 PDBE 
7QT "Initial release"  2024-07-31 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      7QT 
_pdbx_chem_comp_synonyms.name         AT-8500 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
