data_7DT
# 
_chem_comp.id                                    7DT 
_chem_comp.name                                  "7-deazaadenosine-5'-triphosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H17 N4 O13 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-12-07 
_chem_comp.pdbx_modified_date                    2016-06-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        506.193 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7DT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5EXW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7DT O3G   O1  O 0 1 N N N 20.648 0.821   5.390 5.187  3.426  -0.412 O3G   7DT 1  
7DT PG    P1  P 0 1 N N N 19.893 1.453   4.211 5.862  2.351  0.577  PG    7DT 2  
7DT O2G   O2  O 0 1 N N N 20.816 2.315   3.409 7.168  1.925  0.026  O2G   7DT 3  
7DT O1G   O3  O 0 1 N N N 18.547 1.991   4.551 6.083  3.019  2.025  O1G   7DT 4  
7DT O3B   O4  O 0 1 N N N 19.550 0.197   3.232 4.897  1.070  0.719  O3B   7DT 5  
7DT PB    P2  P 0 1 N N N 20.569 -0.615  2.436 4.614  -0.224 -0.196 PB    7DT 6  
7DT O2B   O5  O 0 1 N N N 20.408 -0.519  0.932 4.586  0.176  -1.621 O2B   7DT 7  
7DT O1B   O6  O 0 1 N N N 21.992 -0.466  3.000 5.781  -1.309 0.034  O1B   7DT 8  
7DT O3A   O7  O 0 1 N N N 20.136 -2.112  2.861 3.195  -0.868 0.209  O3A   7DT 9  
7DT PA    P3  P 0 1 N N N 19.095 -3.137  2.255 2.214  -1.938 -0.487 PA    7DT 10 
7DT O1A   O8  O 0 1 N N N 19.842 -4.278  1.636 2.760  -3.427 -0.211 O1A   7DT 11 
7DT O2A   O9  O 0 1 N N N 18.102 -2.476  1.364 2.169  -1.691 -1.945 O2A   7DT 12 
7DT "O5'" O10 O 0 1 N N N 18.347 -3.649  3.539 0.733  -1.787 0.128  "O5'" 7DT 13 
7DT "C5'" C1  C 0 1 N N N 19.018 -4.375  4.603 -0.390 -2.525 -0.356 "C5'" 7DT 14 
7DT "C4'" C2  C 0 1 N N R 18.015 -4.819  5.643 -1.636 -2.144 0.445  "C4'" 7DT 15 
7DT "O4'" O11 O 0 1 N N N 17.156 -5.725  4.942 -2.038 -0.792 0.136  "O4'" 7DT 16 
7DT "C1'" C3  C 0 1 N N R 16.964 -6.831  5.794 -3.427 -0.710 0.524  "C1'" 7DT 17 
7DT N9    N1  N 0 1 Y N N 16.554 -8.041  5.041 -4.084 0.405  -0.163 N9    7DT 18 
7DT C8    C4  C 0 1 Y N N 17.163 -8.627  3.985 -3.665 0.955  -1.347 C8    7DT 19 
7DT C20   C5  C 0 1 Y N N 16.426 -9.730  3.623 -4.491 1.953  -1.703 C20   7DT 20 
7DT C5    C6  C 0 1 Y N N 15.329 -9.815  4.438 -5.515 2.045  -0.664 C5    7DT 21 
7DT C6    C7  C 0 1 Y N N 14.256 -10.721 4.521 -6.637 2.857  -0.443 C6    7DT 22 
7DT N6    N2  N 0 1 N N N 14.184 -11.781 3.648 -6.980 3.852  -1.341 N6    7DT 23 
7DT N1    N3  N 0 1 Y N N 13.357 -10.524 5.440 -7.363 2.646  0.651  N1    7DT 24 
7DT C2    C8  C 0 1 Y N N 13.410 -9.485  6.303 -7.039 1.697  1.511  C2    7DT 25 
7DT N3    N4  N 0 1 Y N N 14.448 -8.610  6.218 -5.996 0.913  1.345  N3    7DT 26 
7DT C4    C9  C 0 1 Y N N 15.415 -8.757  5.312 -5.208 1.046  0.280  C4    7DT 27 
7DT "C2'" C10 C 0 1 N N R 18.374 -7.092  6.419 -4.042 -2.055 0.076  "C2'" 7DT 28 
7DT "O2'" O12 O 0 1 N N N 18.326 -7.824  7.623 -5.004 -2.507 1.030  "O2'" 7DT 29 
7DT "C3'" C11 C 0 1 N N S 18.726 -5.612  6.755 -2.836 -3.019 0.023  "C3'" 7DT 30 
7DT "O3'" O13 O 0 1 N N N 18.183 -5.227  7.951 -3.017 -4.098 0.943  "O3'" 7DT 31 
7DT H1    H1  H 0 1 N N N 21.555 1.105   5.375 4.326  3.749  -0.113 H1    7DT 32 
7DT H2    H2  H 0 1 N N N 18.454 2.864   4.188 6.656  3.798  2.016  H2    7DT 33 
7DT H3    H3  H 0 1 N N N 22.603 -0.327  2.286 5.858  -1.617 0.948  H3    7DT 34 
7DT H4    H4  H 0 1 N N N 19.550 -4.400  0.740 2.816  -3.658 0.727  H4    7DT 35 
7DT H5    H5  H 0 1 N N N 19.519 -5.258  4.181 -0.550 -2.293 -1.409 H5    7DT 36 
7DT H6    H6  H 0 1 N N N 19.765 -3.720  5.075 -0.199 -3.593 -0.245 H6    7DT 37 
7DT H7    H7  H 0 1 N N N 17.469 -3.961  6.062 -1.446 -2.250 1.513  H7    7DT 38 
7DT H8    H8  H 0 1 N N N 16.243 -6.609  6.594 -3.513 -0.595 1.604  H8    7DT 39 
7DT H9    H9  H 0 1 N N N 18.071 -8.287  3.509 -2.801 0.634  -1.910 H9    7DT 40 
7DT H10   H10 H 0 1 N N N 16.672 -10.417 2.827 -4.413 2.569  -2.586 H10   7DT 41 
7DT H11   H11 H 0 1 N N N 13.368 -12.323 3.848 -6.442 3.995  -2.135 H11   7DT 42 
7DT H12   H12 H 0 1 N N N 14.134 -11.438 2.710 -7.759 4.406  -1.176 H12   7DT 43 
7DT H13   H13 H 0 1 N N N 12.640 -9.352  7.049 -7.656 1.560  2.387  H13   7DT 44 
7DT H14   H14 H 0 1 N N N 19.069 -7.509  5.675 -4.497 -1.957 -0.910 H14   7DT 45 
7DT H15   H15 H 0 1 N N N 19.208 -7.950  7.953 -5.422 -3.348 0.799  H15   7DT 46 
7DT H16   H16 H 0 1 N N N 19.814 -5.458  6.703 -2.695 -3.399 -0.989 H16   7DT 47 
7DT H17   H17 H 0 1 N N N 18.604 -5.702  8.658 -3.759 -4.680 0.726  H17   7DT 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7DT O2B   PB    DOUB N N 1  
7DT O2A   PA    DOUB N N 2  
7DT O1A   PA    SING N N 3  
7DT PA    O3A   SING N N 4  
7DT PA    "O5'" SING N N 5  
7DT PB    O3A   SING N N 6  
7DT PB    O1B   SING N N 7  
7DT PB    O3B   SING N N 8  
7DT O3B   PG    SING N N 9  
7DT O2G   PG    DOUB N N 10 
7DT "O5'" "C5'" SING N N 11 
7DT C20   C8    DOUB Y N 12 
7DT C20   C5    SING Y N 13 
7DT N6    C6    SING N N 14 
7DT C8    N9    SING Y N 15 
7DT PG    O1G   SING N N 16 
7DT PG    O3G   SING N N 17 
7DT C5    C6    DOUB Y N 18 
7DT C5    C4    SING Y N 19 
7DT C6    N1    SING Y N 20 
7DT "C5'" "C4'" SING N N 21 
7DT "O4'" "C4'" SING N N 22 
7DT "O4'" "C1'" SING N N 23 
7DT N9    C4    SING Y N 24 
7DT N9    "C1'" SING N N 25 
7DT C4    N3    DOUB Y N 26 
7DT N1    C2    DOUB Y N 27 
7DT "C4'" "C3'" SING N N 28 
7DT "C1'" "C2'" SING N N 29 
7DT N3    C2    SING Y N 30 
7DT "C2'" "C3'" SING N N 31 
7DT "C2'" "O2'" SING N N 32 
7DT "C3'" "O3'" SING N N 33 
7DT O3G   H1    SING N N 34 
7DT O1G   H2    SING N N 35 
7DT O1B   H3    SING N N 36 
7DT O1A   H4    SING N N 37 
7DT "C5'" H5    SING N N 38 
7DT "C5'" H6    SING N N 39 
7DT "C4'" H7    SING N N 40 
7DT "C1'" H8    SING N N 41 
7DT C8    H9    SING N N 42 
7DT C20   H10   SING N N 43 
7DT N6    H11   SING N N 44 
7DT N6    H12   SING N N 45 
7DT C2    H13   SING N N 46 
7DT "C2'" H14   SING N N 47 
7DT "O2'" H15   SING N N 48 
7DT "C3'" H16   SING N N 49 
7DT "O3'" H17   SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7DT InChI            InChI                1.03  
"InChI=1S/C11H17N4O13P3/c12-9-5-1-2-15(10(5)14-4-13-9)11-8(17)7(16)6(26-11)3-25-30(21,22)28-31(23,24)27-29(18,19)20/h1-2,4,6-8,11,16-17H,3H2,(H,21,22)(H,23,24)(H2,12,13,14)(H2,18,19,20)/t6-,7-,8-,11-/m1/s1" 
7DT InChIKey         InChI                1.03  GVVRDIINMFAFEO-KCGFPETGSA-N 
7DT SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(ccc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O" 
7DT SMILES           CACTVS               3.385 "Nc1ncnc2n(ccc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O" 
7DT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1cn(c2c1c(ncn2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O" 
7DT SMILES           "OpenEye OEToolkits" 2.0.4 "c1cn(c2c1c(ncn2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7DT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7DT "Create component" 2015-12-07 RCSB 
7DT "Initial release"  2016-06-15 RCSB 
# 
