data_5NT
# 
_chem_comp.id                                    5NT 
_chem_comp.name                                  "2-azanyl-7-[(2~{S},3~{R},5~{S})-5-(hydroxymethyl)-3-oxidanyl-pyrrolidin-2-yl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H15 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-10-28 
_chem_comp.pdbx_modified_date                    2016-11-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        265.269 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5NT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5EGR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5NT O2  O1  O 0 1 N N N 108.658 17.911 23.543 4.156  -2.004 -0.440 O2  5NT 1  
5NT C10 C1  C 0 1 N N N 107.541 17.597 23.129 3.453  -1.046 -0.165 C10 5NT 2  
5NT N4  N1  N 0 1 N N N 106.533 17.286 24.026 4.002  0.149  0.144  N4  5NT 3  
5NT C   C2  C 0 1 N N N 105.284 16.850 23.684 3.209  1.216  0.450  C   5NT 4  
5NT N   N2  N 0 1 N N N 104.443 16.565 24.682 3.798  2.418  0.759  N   5NT 5  
5NT C9  C3  C 0 1 Y N N 107.114 17.433 21.780 2.050  -1.160 -0.167 C9  5NT 6  
5NT C1  C4  C 0 1 Y N N 105.847 16.971 21.476 1.283  -0.033 0.155  C1  5NT 7  
5NT N1  N3  N 0 1 N N N 104.895 16.671 22.425 1.901  1.126  0.458  N1  5NT 8  
5NT N3  N4  N 0 1 Y N N 107.741 17.648 20.574 1.172  -2.190 -0.430 N3  5NT 9  
5NT C8  C5  C 0 1 Y N N 106.910 17.321 19.540 -0.100 -1.730 -0.279 C8  5NT 10 
5NT C2  C6  C 0 1 Y N N 105.719 16.868 20.052 -0.069 -0.429 0.075  C2  5NT 11 
5NT C3  C7  C 0 1 N N S 104.586 16.243 19.282 -1.267 0.447  0.338  C3  5NT 12 
5NT C7  C8  C 0 1 N N R 103.418 17.184 18.897 -1.642 1.221  -0.940 C7  5NT 13 
5NT O1  O2  O 0 1 N N N 102.192 16.472 19.063 -1.577 2.628  -0.704 O1  5NT 14 
5NT C6  C9  C 0 1 N N N 103.624 17.394 17.407 -3.094 0.796  -1.258 C6  5NT 15 
5NT C4  C10 C 0 1 N N S 104.105 16.026 16.937 -3.616 0.294  0.112  C4  5NT 16 
5NT N2  N5  N 0 1 N N N 105.064 15.689 18.010 -2.432 -0.388 0.702  N2  5NT 17 
5NT C5  C11 C 0 1 N N N 104.742 16.057 15.560 -4.769 -0.693 -0.079 C5  5NT 18 
5NT O   O3  O 0 1 N N N 105.768 17.037 15.479 -5.307 -1.050 1.196  O   5NT 19 
5NT H1  H1  H 0 1 N N N 106.735 17.388 25.000 4.967  0.249  0.147  H1  5NT 20 
5NT H2  H2  H 0 1 N N N 103.527 16.219 24.480 4.765  2.499  0.757  H2  5NT 21 
5NT H3  H3  H 0 1 N N N 104.730 16.698 25.631 3.247  3.185  0.979  H3  5NT 22 
5NT H4  H4  H 0 1 N N N 108.673 17.995 20.469 1.420  -3.093 -0.681 H4  5NT 23 
5NT H5  H5  H 0 1 N N N 107.151 17.405 18.491 -0.996 -2.316 -0.420 H5  5NT 24 
5NT H6  H6  H 0 1 N N N 104.169 15.425 19.888 -1.045 1.146  1.144  H6  5NT 25 
5NT H7  H7  H 0 1 N N N 103.457 18.130 19.457 -0.977 0.944  -1.758 H7  5NT 26 
5NT H8  H8  H 0 1 N N N 102.034 16.324 19.988 -1.804 3.167  -1.474 H8  5NT 27 
5NT H9  H9  H 0 1 N N N 104.383 18.168 17.217 -3.678 1.648  -1.605 H9  5NT 28 
5NT H10 H10 H 0 1 N N N 102.682 17.674 16.912 -3.108 -0.006 -1.997 H10 5NT 29 
5NT H11 H11 H 0 1 N N N 103.264 15.317 16.941 -3.924 1.132  0.736  H11 5NT 30 
5NT H12 H12 H 0 1 N N N 105.142 14.695 18.087 -2.524 -0.472 1.703  H12 5NT 31 
5NT H14 H14 H 0 1 N N N 103.968 16.289 14.814 -5.548 -0.229 -0.684 H14 5NT 32 
5NT H15 H15 H 0 1 N N N 105.175 15.069 15.345 -4.403 -1.588 -0.582 H15 5NT 33 
5NT H16 H16 H 0 1 N N N 106.145 17.030 14.607 -6.044 -1.674 1.152  H16 5NT 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5NT O   C5  SING N N 1  
5NT C5  C4  SING N N 2  
5NT C4  C6  SING N N 3  
5NT C4  N2  SING N N 4  
5NT C6  C7  SING N N 5  
5NT N2  C3  SING N N 6  
5NT C7  O1  SING N N 7  
5NT C7  C3  SING N N 8  
5NT C3  C2  SING N N 9  
5NT C8  C2  DOUB Y N 10 
5NT C8  N3  SING Y N 11 
5NT C2  C1  SING Y N 12 
5NT N3  C9  SING Y N 13 
5NT C1  C9  DOUB Y N 14 
5NT C1  N1  SING N N 15 
5NT C9  C10 SING N N 16 
5NT N1  C   DOUB N N 17 
5NT C10 O2  DOUB N N 18 
5NT C10 N4  SING N N 19 
5NT C   N4  SING N N 20 
5NT C   N   SING N N 21 
5NT N4  H1  SING N N 22 
5NT N   H2  SING N N 23 
5NT N   H3  SING N N 24 
5NT N3  H4  SING N N 25 
5NT C8  H5  SING N N 26 
5NT C3  H6  SING N N 27 
5NT C7  H7  SING N N 28 
5NT O1  H8  SING N N 29 
5NT C6  H9  SING N N 30 
5NT C6  H10 SING N N 31 
5NT C4  H11 SING N N 32 
5NT N2  H12 SING N N 33 
5NT C5  H14 SING N N 34 
5NT C5  H15 SING N N 35 
5NT O   H16 SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5NT InChI            InChI                1.03  "InChI=1S/C11H15N5O3/c12-11-15-8-5(2-13-9(8)10(19)16-11)7-6(18)1-4(3-17)14-7/h2,4,6-7,13-14,17-18H,1,3H2,(H3,12,15,16,19)/t4-,6+,7-/m0/s1" 
5NT InChIKey         InChI                1.03  ZIWDWRULEXWPGT-JHYUDYDFSA-N                                                                                                                
5NT SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2c(c[nH]c2C(=O)N1)[C@@H]3N[C@H](CO)C[C@H]3O"                                                                                        
5NT SMILES           CACTVS               3.385 "NC1=Nc2c(c[nH]c2C(=O)N1)[CH]3N[CH](CO)C[CH]3O"                                                                                            
5NT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1c(c2c([nH]1)C(=O)NC(=N2)N)[C@H]3[C@@H](C[C@H](N3)CO)O"                                                                                  
5NT SMILES           "OpenEye OEToolkits" 2.0.4 "c1c(c2c([nH]1)C(=O)NC(=N2)N)C3C(CC(N3)CO)O"                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5NT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "2-azanyl-7-[(2~{S},3~{R},5~{S})-5-(hydroxymethyl)-3-oxidanyl-pyrrolidin-2-yl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5NT "Create component" 2015-10-28 EBI  
5NT "Initial release"  2016-11-09 RCSB 
# 
