data_53T
# 
_chem_comp.id                                    53T 
_chem_comp.name                                  "5-[(3R)-3-(5-methoxy-3',5'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H26 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-09-15 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        386.489 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     53T 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3EEL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
53T N2   N2   N 0 1 Y N N 16.437 -10.151 -1.819  6.335  -0.956 0.447  N2   53T 1  
53T C8   C8   C 0 1 N N N 14.548 -8.746  -5.417  2.928  1.264  1.568  C8   53T 2  
53T C10  C10  C 0 1 N N N 14.360 -7.269  -2.713  2.849  -0.597 -0.649 C10  53T 3  
53T C11  C11  C 0 1 N N N 13.729 -6.262  -2.549  1.850  -0.738 -1.250 C11  53T 4  
53T C12  C12  C 0 1 N N S 13.072 -4.976  -2.246  0.598  -0.915 -2.003 C12  53T 5  
53T C13  C13  C 0 1 N N N 12.009 -4.975  -1.125  0.828  -0.545 -3.469 C13  53T 6  
53T C1   C1   C 0 1 Y N N 15.761 -9.003  -1.694  5.227  -1.147 -0.260 C1   53T 7  
53T C2   C2   C 0 1 N N N 14.718 -0.813  -4.714  -2.132 4.309  -0.287 C2   53T 8  
53T C3   C3   C 0 1 Y N N 16.533 -10.777 -2.989  6.353  -0.100 1.459  C3   53T 9  
53T C5   C5   C 0 1 Y N N 15.199 -9.176  -4.068  4.138  0.465  1.157  C5   53T 10 
53T C6   C6   C 0 1 Y N N 15.106 -8.485  -2.841  4.067  -0.424 0.084  C6   53T 11 
53T C26  C26  C 0 1 N N N 6.954  -6.574  -6.003  -7.077 0.806  1.794  C26  53T 12 
53T C21  C21  C 0 1 Y N N 8.101  -5.776  -6.662  -6.007 -0.082 1.211  C21  53T 13 
53T C20  C20  C 0 1 Y N N 9.097  -5.269  -5.825  -4.850 0.475  0.706  C20  53T 14 
53T C22  C22  C 0 1 Y N N 8.146  -5.554  -8.053  -6.186 -1.453 1.189  C22  53T 15 
53T C23  C23  C 0 1 Y N N 9.224  -4.814  -8.596  -5.208 -2.274 0.656  C23  53T 16 
53T C27  C27  C 0 1 N N N 9.321  -4.556  -10.114 -5.410 -3.767 0.635  C27  53T 17 
53T C24  C24  C 0 1 Y N N 10.231 -4.315  -7.751  -4.049 -1.728 0.143  C24  53T 18 
53T C25  C25  C 0 1 Y N N 10.177 -4.546  -6.351  -3.862 -0.347 0.168  C25  53T 19 
53T C18  C18  C 0 1 Y N N 11.187 -4.067  -5.493  -2.615 0.245  -0.377 C18  53T 20 
53T C19  C19  C 0 1 Y N N 11.594 -4.788  -4.352  -1.628 -0.578 -0.915 C19  53T 21 
53T C17  C17  C 0 1 Y N N 11.832 -2.852  -5.777  -2.431 1.625  -0.356 C17  53T 22 
53T C16  C16  C 0 1 Y N N 12.850 -2.346  -4.973  -1.265 2.172  -0.865 C16  53T 23 
53T O17  O17  O 0 1 N N N 13.434 -1.143  -5.349  -1.081 3.519  -0.847 O17  53T 24 
53T C15  C15  C 0 1 Y N N 13.236 -3.058  -3.816  -0.284 1.345  -1.395 C15  53T 25 
53T C14  C14  C 0 1 Y N N 12.606 -4.266  -3.512  -0.468 -0.024 -1.421 C14  53T 26 
53T N4   N4   N 0 1 Y N N 15.925 -10.307 -4.095  5.282  0.596  1.809  N4   53T 27 
53T N7   N7   N 0 1 N N N 17.201 -11.918 -3.071  7.527  0.071  2.170  N7   53T 28 
53T N9   N9   N 0 1 N N N 15.699 -8.402  -0.498  5.212  -2.041 -1.315 N9   53T 29 
53T H8   H8   H 0 1 N N N 13.461 -8.645  -5.284  2.357  0.704  2.308  H8   53T 30 
53T H8A  H8A  H 0 1 N N N 14.970 -7.782  -5.736  3.249  2.213  1.997  H8A  53T 31 
53T H8B  H8B  H 0 1 N N N 14.754 -9.508  -6.183  2.304  1.453  0.694  H8B  53T 32 
53T H12  H12  H 0 1 N N N 13.877 -4.381  -1.791  0.278  -1.955 -1.937 H12  53T 33 
53T H13  H13  H 0 1 N N N 12.509 -4.975  -0.145  1.600  -1.190 -3.890 H13  53T 34 
53T H13A H13A H 0 0 N N N 11.381 -4.077  -1.216  -0.099 -0.676 -4.027 H13A 53T 35 
53T H13B H13B H 0 0 N N N 11.380 -5.873  -1.215  1.148  0.495  -3.536 H13B 53T 36 
53T H2   H2   H 0 1 N N N 15.498 -0.731  -5.485  -2.289 4.021  0.752  H2   53T 37 
53T H2A  H2A  H 0 1 N N N 14.627 0.145   -4.180  -1.858 5.363  -0.334 H2A  53T 38 
53T H2B  H2B  H 0 1 N N N 14.989 -1.606  -4.002  -3.050 4.147  -0.852 H2B  53T 39 
53T H26  H26  H 0 1 N N N 7.198  -6.764  -4.947  -7.775 1.097  1.009  H26  53T 40 
53T H26A H26A H 0 0 N N N 6.021  -5.994  -6.065  -7.612 0.266  2.575  H26A 53T 41 
53T H26B H26B H 0 0 N N N 6.826  -7.532  -6.527  -6.616 1.698  2.220  H26B 53T 42 
53T H20  H20  H 0 1 N N N 9.035  -5.436  -4.760  -4.710 1.545  0.728  H20  53T 43 
53T H22  H22  H 0 1 N N N 7.370  -5.943  -8.695  -7.091 -1.885 1.589  H22  53T 44 
53T H27  H27  H 0 1 N N N 9.344  -3.472  -10.302 -5.901 -4.055 -0.295 H27  53T 45 
53T H27A H27A H 0 0 N N N 10.240 -5.015  -10.506 -4.442 -4.265 0.703  H27A 53T 46 
53T H27B H27B H 0 0 N N N 8.447  -4.996  -10.617 -6.030 -4.062 1.481  H27B 53T 47 
53T H24  H24  H 0 1 N N N 11.052 -3.752  -8.170  -3.287 -2.370 -0.273 H24  53T 48 
53T H19  H19  H 0 1 N N N 11.134 -5.737  -4.119  -1.769 -1.648 -0.936 H19  53T 49 
53T H17  H17  H 0 1 N N N 11.528 -2.291  -6.649  -3.195 2.268  0.056  H17  53T 50 
53T H15  H15  H 0 1 N N N 14.012 -2.671  -3.172  0.625  1.774  -1.792 H15  53T 51 
53T HN7  HN7  H 0 1 N N N 17.369 -12.138 -4.032  8.320  -0.431 1.926  HN7  53T 52 
53T HN7A HN7A H 0 0 N N N 18.074 -11.828 -2.592  7.557  0.694  2.914  HN7A 53T 53 
53T HN9  HN9  H 0 1 N N N 15.684 -9.095  0.223   6.015  -2.534 -1.545 HN9  53T 54 
53T HN9A HN9A H 0 0 N N N 16.499 -7.814  -0.379  4.398  -2.175 -1.826 HN9A 53T 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
53T N2  C1   DOUB Y N 1  
53T N2  C3   SING Y N 2  
53T C8  C5   SING N N 3  
53T C10 C11  TRIP N N 4  
53T C10 C6   SING N N 5  
53T C11 C12  SING N N 6  
53T C12 C13  SING N N 7  
53T C12 C14  SING N N 8  
53T C1  C6   SING Y N 9  
53T C1  N9   SING N N 10 
53T C2  O17  SING N N 11 
53T C3  N4   DOUB Y N 12 
53T C3  N7   SING N N 13 
53T C5  C6   DOUB Y N 14 
53T C5  N4   SING Y N 15 
53T C26 C21  SING N N 16 
53T C21 C20  DOUB Y N 17 
53T C21 C22  SING Y N 18 
53T C20 C25  SING Y N 19 
53T C22 C23  DOUB Y N 20 
53T C23 C27  SING N N 21 
53T C23 C24  SING Y N 22 
53T C24 C25  DOUB Y N 23 
53T C25 C18  SING Y N 24 
53T C18 C19  DOUB Y N 25 
53T C18 C17  SING Y N 26 
53T C19 C14  SING Y N 27 
53T C17 C16  DOUB Y N 28 
53T C16 O17  SING N N 29 
53T C16 C15  SING Y N 30 
53T C15 C14  DOUB Y N 31 
53T C8  H8   SING N N 32 
53T C8  H8A  SING N N 33 
53T C8  H8B  SING N N 34 
53T C12 H12  SING N N 35 
53T C13 H13  SING N N 36 
53T C13 H13A SING N N 37 
53T C13 H13B SING N N 38 
53T C2  H2   SING N N 39 
53T C2  H2A  SING N N 40 
53T C2  H2B  SING N N 41 
53T C26 H26  SING N N 42 
53T C26 H26A SING N N 43 
53T C26 H26B SING N N 44 
53T C20 H20  SING N N 45 
53T C22 H22  SING N N 46 
53T C27 H27  SING N N 47 
53T C27 H27A SING N N 48 
53T C27 H27B SING N N 49 
53T C24 H24  SING N N 50 
53T C19 H19  SING N N 51 
53T C17 H17  SING N N 52 
53T C15 H15  SING N N 53 
53T N7  HN7  SING N N 54 
53T N7  HN7A SING N N 55 
53T N9  HN9  SING N N 56 
53T N9  HN9A SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
53T SMILES           ACDLabs              10.04 "C(#CC(c2cc(c1cc(cc(c1)C)C)cc(OC)c2)C)c3c(nc(nc3C)N)N"                                                                                                   
53T SMILES_CANONICAL CACTVS               3.341 "COc1cc(cc(c1)c2cc(C)cc(C)c2)[C@@H](C)C#Cc3c(C)nc(N)nc3N"                                                                                                
53T SMILES           CACTVS               3.341 "COc1cc(cc(c1)c2cc(C)cc(C)c2)[CH](C)C#Cc3c(C)nc(N)nc3N"                                                                                                  
53T SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cc(cc(c1)c2cc(cc(c2)OC)[C@@H](C)C#Cc3c(nc(nc3N)N)C)C"                                                                                                
53T SMILES           "OpenEye OEToolkits" 1.5.0 "Cc1cc(cc(c1)c2cc(cc(c2)OC)C(C)C#Cc3c(nc(nc3N)N)C)C"                                                                                                     
53T InChI            InChI                1.03  "InChI=1S/C24H26N4O/c1-14-8-15(2)10-19(9-14)20-11-18(12-21(13-20)29-5)16(3)6-7-22-17(4)27-24(26)28-23(22)25/h8-13,16H,1-5H3,(H4,25,26,27,28)/t16-/m0/s1" 
53T InChIKey         InChI                1.03  ATFDKOLABYIYCC-INIZCTEOSA-N                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
53T "SYSTEMATIC NAME" ACDLabs              10.04 "5-[(3R)-3-(5-methoxy-3',5'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 
53T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-[(3R)-3-[3-(3,5-dimethylphenyl)-5-methoxy-phenyl]but-1-ynyl]-6-methyl-pyrimidine-2,4-diamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
53T "Create component"     2008-09-15 RCSB 
53T "Modify aromatic_flag" 2011-06-04 RCSB 
53T "Modify descriptor"    2011-06-04 RCSB 
# 
