data_3YT
# 
_chem_comp.id                                    3YT 
_chem_comp.name                                  "2-{[(1R,2S)-2-aminocyclohexyl]amino}-4-{[3-(2H-1,2,3-triazol-2-yl)phenyl]amino}pyrimidine-5-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H23 N9 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-12-11 
_chem_comp.pdbx_modified_date                    2015-03-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        393.446 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3YT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4RX9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3YT C2  C2  C 0 1 N N S 0.718  4.489  13.290 4.868  -2.024 0.670  C2  3YT 1  
3YT C3  C3  C 0 1 N N N -0.713 4.644  12.747 4.249  -3.263 0.020  C3  3YT 2  
3YT C11 C11 C 0 1 Y N N 5.217  1.822  14.526 2.347  2.790  -0.146 C11 3YT 3  
3YT C12 C12 C 0 1 Y N N 4.430  0.685  14.733 0.955  2.867  -0.026 C12 3YT 4  
3YT C13 C13 C 0 1 N N N 4.971  -0.429 15.551 0.262  4.165  -0.085 C13 3YT 5  
3YT C16 C16 C 0 1 Y N N 3.150  0.610  14.218 0.234  1.667  0.154  C16 3YT 6  
3YT C18 C18 C 0 1 Y N N 1.124  -0.666 14.321 -1.829 0.512  0.601  C18 3YT 7  
3YT C19 C19 C 0 1 Y N N 0.563  -1.705 15.013 -1.274 -0.396 1.495  C19 3YT 8  
3YT C20 C20 C 0 1 Y N N -0.759 -2.019 14.863 -1.954 -1.555 1.815  C20 3YT 9  
3YT C21 C21 C 0 1 Y N N -1.555 -1.247 14.042 -3.187 -1.816 1.247  C21 3YT 10 
3YT C22 C22 C 0 1 Y N N -1.032 -0.189 13.320 -3.746 -0.913 0.352  C22 3YT 11 
3YT C23 C23 C 0 1 Y N N 0.336  0.091  13.462 -3.069 0.255  0.034  C23 3YT 12 
3YT C26 C26 C 0 1 Y N N -3.808 1.228  11.957 -6.814 -2.153 -0.682 C26 3YT 13 
3YT C27 C27 C 0 1 Y N N -2.733 1.918  11.245 -6.751 -0.943 -1.377 C27 3YT 14 
3YT N1  N1  N 0 1 N N N 1.207  5.825  13.660 4.515  -1.992 2.096  N1  3YT 15 
3YT C4  C4  C 0 1 N N N -0.752 5.388  11.393 4.617  -3.297 -1.465 C4  3YT 16 
3YT C5  C5  C 0 1 N N N 0.128  4.687  10.337 4.082  -2.039 -2.152 C5  3YT 17 
3YT C6  C6  C 0 1 N N N 1.564  4.704  10.886 4.701  -0.800 -1.501 C6  3YT 18 
3YT C7  C7  C 0 1 N N R 1.634  3.885  12.190 4.333  -0.766 -0.016 C7  3YT 19 
3YT N8  N8  N 0 1 N N N 3.003  3.785  12.630 2.876  -0.715 0.125  N8  3YT 20 
3YT C9  C9  C 0 1 Y N N 3.468  2.732  13.313 2.220  0.497  0.071  C9  3YT 21 
3YT N10 N10 N 0 1 Y N N 4.698  2.807  13.817 2.931  1.607  -0.094 N10 3YT 22 
3YT N14 N14 N 0 1 N N N 6.203  -0.331 15.886 0.954  5.285  -0.371 N14 3YT 23 
3YT O15 O15 O 0 1 N N N 4.225  -1.282 15.902 -0.934 4.225  0.125  O15 3YT 24 
3YT N17 N17 N 0 1 N N N 2.419  -0.484 14.489 -1.140 1.685  0.278  N17 3YT 25 
3YT N24 N24 N 0 1 Y N N -1.907 0.517  12.583 -4.999 -1.175 -0.219 N24 3YT 26 
3YT N25 N25 N 0 1 Y N N -3.243 0.446  12.736 -5.701 -2.227 0.013  N25 3YT 27 
3YT N28 N28 N 0 1 Y N N -1.657 1.447  11.678 -5.606 -0.394 -1.040 N28 3YT 28 
3YT N29 N29 N 0 1 Y N N 2.695  1.652  13.501 0.902  0.520  0.201  N29 3YT 29 
3YT H1  H1  H 0 1 N N N 0.711  3.824  14.166 5.953  -2.062 0.565  H1  3YT 30 
3YT H2  H2  H 0 1 N N N -1.309 5.210  13.478 4.630  -4.159 0.509  H2  3YT 31 
3YT H3  H3  H 0 1 N N N -1.150 3.644  12.613 3.165  -3.225 0.125  H3  3YT 32 
3YT H4  H4  H 0 1 N N N 6.215  1.892  14.932 2.936  3.685  -0.285 H4  3YT 33 
3YT H5  H5  H 0 1 N N N 1.174  -2.286 15.688 -0.311 -0.195 1.940  H5  3YT 34 
3YT H6  H6  H 0 1 N N N -1.178 -2.867 15.384 -1.521 -2.260 2.510  H6  3YT 35 
3YT H7  H7  H 0 1 N N N -2.608 -1.473 13.961 -3.715 -2.723 1.499  H7  3YT 36 
3YT H8  H8  H 0 1 N N N 0.779  0.900  12.900 -3.502 0.959  -0.662 H8  3YT 37 
3YT H9  H9  H 0 1 N N N -4.871 1.370  11.831 -7.616 -2.877 -0.706 H9  3YT 38 
3YT H10 H10 H 0 1 N N N -2.845 2.684  10.492 -7.491 -0.541 -2.053 H10 3YT 39 
3YT H11 H11 H 0 1 N N N 0.616  6.212  14.368 4.858  -2.813 2.572  H11 3YT 40 
3YT H12 H12 H 0 1 N N N 2.142  5.753  14.008 4.858  -1.150 2.534  H12 3YT 41 
3YT H14 H14 H 0 1 N N N -0.386 6.415  11.539 5.701  -3.335 -1.570 H14 3YT 42 
3YT H15 H15 H 0 1 N N N -1.790 5.417  11.031 4.175  -4.179 -1.928 H15 3YT 43 
3YT H16 H16 H 0 1 N N N 0.080  5.229  9.381  4.343  -2.063 -3.209 H16 3YT 44 
3YT H17 H17 H 0 1 N N N -0.210 3.651  10.188 2.997  -2.001 -2.046 H17 3YT 45 
3YT H18 H18 H 0 1 N N N 2.245  4.265  10.142 5.785  -0.838 -1.606 H18 3YT 46 
3YT H19 H19 H 0 1 N N N 1.865  5.742  11.090 4.320  0.096  -1.990 H19 3YT 47 
3YT H20 H20 H 0 1 N N N 1.259  2.875  11.968 4.774  0.116  0.447  H20 3YT 48 
3YT H21 H21 H 0 1 N N N 3.564  3.850  11.805 2.372  -1.533 0.257  H21 3YT 49 
3YT H22 H22 H 0 1 N N N 6.611  -1.011 16.495 1.908  5.237  -0.538 H22 3YT 50 
3YT H23 H23 H 0 1 N N N 6.757  0.426  15.539 0.497  6.140  -0.410 H23 3YT 51 
3YT H24 H24 H 0 1 N N N 2.922  -1.261 14.867 -1.629 2.512  0.141  H24 3YT 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3YT C5  C6  SING N N 1  
3YT C5  C4  SING N N 2  
3YT C6  C7  SING N N 3  
3YT C27 N28 DOUB Y N 4  
3YT C27 C26 SING Y N 5  
3YT C4  C3  SING N N 6  
3YT N28 N24 SING Y N 7  
3YT C26 N25 DOUB Y N 8  
3YT C7  N8  SING N N 9  
3YT C7  C2  SING N N 10 
3YT N24 N25 SING Y N 11 
3YT N24 C22 SING N N 12 
3YT N8  C9  SING N N 13 
3YT C3  C2  SING N N 14 
3YT C2  N1  SING N N 15 
3YT C9  N29 DOUB Y N 16 
3YT C9  N10 SING Y N 17 
3YT C22 C23 DOUB Y N 18 
3YT C22 C21 SING Y N 19 
3YT C23 C18 SING Y N 20 
3YT N29 C16 SING Y N 21 
3YT N10 C11 DOUB Y N 22 
3YT C21 C20 DOUB Y N 23 
3YT C16 N17 SING N N 24 
3YT C16 C12 DOUB Y N 25 
3YT C18 N17 SING N N 26 
3YT C18 C19 DOUB Y N 27 
3YT C11 C12 SING Y N 28 
3YT C12 C13 SING N N 29 
3YT C20 C19 SING Y N 30 
3YT C13 N14 SING N N 31 
3YT C13 O15 DOUB N N 32 
3YT C2  H1  SING N N 33 
3YT C3  H2  SING N N 34 
3YT C3  H3  SING N N 35 
3YT C11 H4  SING N N 36 
3YT C19 H5  SING N N 37 
3YT C20 H6  SING N N 38 
3YT C21 H7  SING N N 39 
3YT C23 H8  SING N N 40 
3YT C26 H9  SING N N 41 
3YT C27 H10 SING N N 42 
3YT N1  H11 SING N N 43 
3YT N1  H12 SING N N 44 
3YT C4  H14 SING N N 45 
3YT C4  H15 SING N N 46 
3YT C5  H16 SING N N 47 
3YT C5  H17 SING N N 48 
3YT C6  H18 SING N N 49 
3YT C6  H19 SING N N 50 
3YT C7  H20 SING N N 51 
3YT N8  H21 SING N N 52 
3YT N14 H22 SING N N 53 
3YT N14 H23 SING N N 54 
3YT N17 H24 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3YT SMILES           ACDLabs              12.01 "O=C(N)c1cnc(nc1Nc2cccc(c2)n3nccn3)NC4CCCCC4N"                                                                                                                                          
3YT InChI            InChI                1.03  "InChI=1S/C19H23N9O/c20-15-6-1-2-7-16(15)26-19-22-11-14(17(21)29)18(27-19)25-12-4-3-5-13(10-12)28-23-8-9-24-28/h3-5,8-11,15-16H,1-2,6-7,20H2,(H2,21,29)(H2,22,25,26,27)/t15-,16+/m0/s1" 
3YT InChIKey         InChI                1.03  TXGKRVFSSHPBAJ-JKSUJKDBSA-N                                                                                                                                                             
3YT SMILES_CANONICAL CACTVS               3.385 "N[C@H]1CCCC[C@H]1Nc2ncc(C(N)=O)c(Nc3cccc(c3)n4nccn4)n2"                                                                                                                                
3YT SMILES           CACTVS               3.385 "N[CH]1CCCC[CH]1Nc2ncc(C(N)=O)c(Nc3cccc(c3)n4nccn4)n2"                                                                                                                                  
3YT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(cc(c1)n2nccn2)Nc3c(cnc(n3)N[C@@H]4CCCC[C@@H]4N)C(=O)N"                                                                                                                            
3YT SMILES           "OpenEye OEToolkits" 1.7.6 "c1cc(cc(c1)n2nccn2)Nc3c(cnc(n3)NC4CCCCC4N)C(=O)N"                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3YT "SYSTEMATIC NAME" ACDLabs              12.01 "2-{[(1R,2S)-2-aminocyclohexyl]amino}-4-{[3-(2H-1,2,3-triazol-2-yl)phenyl]amino}pyrimidine-5-carboxamide" 
3YT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[[(1R,2S)-2-azanylcyclohexyl]amino]-4-[[3-(1,2,3-triazol-2-yl)phenyl]amino]pyrimidine-5-carboxamide"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3YT "Create component" 2014-12-11 RCSB 
3YT "Initial release"  2015-03-18 RCSB 
# 
